TCONS_00027480-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00027480-protein
Unique NameTCONS_00027480-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length340

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00027480-protein ID=TCONS_00027480-protein|Name=TCONS_00027480-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
MMPSLSDLKNLFPTKLHAIIFVGYMALFINQGILVTATKDKNNKYPYNPT
TLVLLSECLKMVTAAVLYAKDDGISGVISGTVKYSRVLLWYLVPAFLYCL
YNNLAFVNLQSYDPTSYFLLLQFRVVVTGVIFQVVFKKKLSRTQWFSLIL
LTLGCIIKQLNISGGSSSTSFNFALNFNFMLILVQIFCSCFAGVYNEYLL
KGNKEDVPFMLQNVFMYMDSIVCNAIVLAYTGKLMGAFTPDAMQTILQPK
VILIIINNAAIGIVTAMFLRSLNSILKTFASALELMFTAVLSWMLFGIPV
NVLTAVAIAIVSYATLLYAQNPVDNTKPVNENREEDNSKV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_015485XLOC_015485Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00027480TCONS_00027480Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007271Nuc_sug_transpt
Vocabulary: Cellular Component
TermDefinition
GO:0000139Golgi membrane
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0008643carbohydrate transport
Vocabulary: Molecular Function
TermDefinition
GO:0005351sugar:proton symporter activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008643 carbohydrate transport
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005351 sugar:proton symporter activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007271Nucleotide-sugar transporterPFAMPF04142Nuc_sug_transpcoord: 36..318
e-value: 2.2E-35
score: 122.2
IPR007271Nucleotide-sugar transporterPIRSFPIRSF005799UDP-gal_transptcoord: 5..340
e-value: 1.5E-72
score: 242.1
NoneNo IPR availableTIGRFAMTIGR00803TIGR00803coord: 93..318
e-value: 8.8E-17
score: 59.5
NoneNo IPR availableSUPERFAMILY103481Multidrug resistance efflux transporter EmrEcoord: 85..157

Blast
[Close]
BLAST of TCONS_00027480-protein vs. Swiss-Prot (Human)
Match: S35A1 (CMP-sialic acid transporter OS=Homo sapiens GN=SLC35A1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.988e-22
Identity = 82/340 (24.12%), Postives = 157/340 (46.18%), Query Frame = 0 
Query:   15 KLHAIIFVGYMALFINQGILVTATKDKNNKYPYNPTTLVLLSECLKMVTAAVLYAKDDGISGVISGTVKYS-----RVLLWYLVPAFLYCLYNNLAFVNLQSYDPTSYFLLLQFRVVVTGVIFQVVFKKKLSRTQWFSLILLTLGCIIKQLNISGGSSSTSFNFALNFNFMLILVQIFCSCFAGVYNEYLLKGNKEDVPFMLQNVFMYMDSIVCNAIVLAYTGKLMGAFTPDAMQTILQPK---------VILIIINNAAIGIVTAMFLRSLNSILKTFASALELMFTAVLSWMLFGIPVNVLTAVAIAIVSYATLLYAQNPVDNTKPVNENREEDNSKV 340
            KL+ +  +  MA      +  T T DK     Y  TT V ++E +K++ +  + AK+ G  G    +++ +     + LL   VP+ +Y + NN+AF+ L + D   Y +  Q ++  T +   ++  + LS+ QW S+ +L  G  + Q   +  +        L   F  I + + CS FAGVY E +LK +  D    ++N+ MY+  I+           L G +  D  +  ++ K         V  +I   +  G+ T++ ++  ++I+K F++A  ++ + + S MLFG+ + +  A+   +V  +  LY   P  +T  + +       +V
Sbjct:   13 KLYCLAVMTLMAAVYTIALRYTRTSDKE---LYFSTTAVCITEVIKLLLSVGILAKETGSLGRFKASLRENVLGSPKELLKLSVPSLVYAVQNNMAFLALSNLDAAVYQVTYQLKIPCTALCTVLMLNRTLSKLQWVSVFMLCAGVTLVQWKPAQATKVVVEQNPL-LGFGAIAIAVLCSGFAGVYFEKVLKSS--DTSLWVRNIQMYLSGIIVT---------LAGVYLSDGAE--IKEKGFFYGYTYYVWFVIFLASVGGLYTSVVVKYTDNIMKGFSAAAAIVLSTIASVMLFGLQITLTFALGTLLVCVSIYLYGL-PRQDTTSIQQGETASKERV 334
The following BLAST results are available for this feature:
BLAST of TCONS_00027480-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S35A13.988e-2224.12CMP-sialic acid transporter OS=Homo sapiens GN=SLC... [more]
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