TCONS_00053462-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00053462-protein
Unique Name	TCONS_00053462-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	375

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00053462-protein ID=TCONS_00053462-protein|Name=TCONS_00053462-protein|organism=Clytia hemisphaerica|type=polypeptide|length=375bp
MKYILQIFAVGLVNLLLHVHCDSETSASGEKQDGEMQIRDDCMRNEKSPC
DYPQFCLTKKNGTHRCIANCYYPRYKASYKNKRRICQDVNECEYVRCGKN
RECINLLGGYKCKQVNCSKGFELKNDRCHDIDECATKDVCGKGRCRNYWG
SFYCYCNHGYKPCQKTKKCIDVNECESNFRRCAYECMNTEGSYKCQCPKG
YKSQGPYCYDVNECSSGEHTCTGMEDCVNTKGSFQCVTYKCPKYMNRVGS
NVCRKQYCHKDDKQCQAVKTSSVKWTRYAFQQKQPARTFTFRYSLSGYGY
QYRYKFYFAKGNEESFFRIRQTSRGRMQIINIKDLIGPKDIQLVFHADVV
DNKNELTDRFIYMIYFNMAEHAMAF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_033751	XLOC_033751	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00053462	TCONS_00053462	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001881	EGF-like_Ca-bd_dom
IPR000742	EGF-like_dom
IPR018097	EGF_Ca-bd_CS
IPR000152	EGF-type_Asp/Asn_hydroxyl_site
IPR013032	EGF-like_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001881	EGF-like calcium-binding domain	SMART	SM00179	egfca_6	coord: 130..170 e-value: 1.1E-8 score: 44.9 coord: 210..254 e-value: 0.0045 score: 20.7 coord: 88..129 e-value: 4.5E-5 score: 32.9 coord: 171..209 e-value: 2.8E-7 score: 40.2
IPR001881	EGF-like calcium-binding domain	PFAM	PF07645	EGF_CA	coord: 210..246 e-value: 4.8E-7 score: 29.8 coord: 171..203 e-value: 5.5E-8 score: 32.8 coord: 130..169 e-value: 1.3E-6 score: 28.4 coord: 88..127 e-value: 1.6E-6 score: 28.1
IPR000742	EGF-like domain	SMART	SM00181	egf_5	coord: 133..170 e-value: 0.098 score: 21.8 coord: 174..209 e-value: 0.2 score: 20.7 coord: 91..129 e-value: 1.1 score: 18.3
IPR000742	EGF-like domain	PROSITE	PS50026	EGF_3	coord: 130..164 score: 10.202
IPR000742	EGF-like domain	PROSITE	PS50026	EGF_3	coord: 171..209 score: 9.961
None	No IPR available	GENE3D	2.10.25.10		coord: 215..287 e-value: 9.0E-7 score: 28.5
None	No IPR available	GENE3D	2.10.25.10		coord: 150..173 e-value: 3.2E-9 score: 36.3
None	No IPR available	GENE3D	2.10.25.10		coord: 53..87 e-value: 0.25 score: 10.7 coord: 194..214 e-value: 3.9E-12 score: 45.3 coord: 111..130 e-value: 5.0E-10 score: 38.6
None	No IPR available	GENE3D	2.10.25.10		coord: 174..193 e-value: 1.3E-11 score: 44.0
None	No IPR available	GENE3D	2.10.25.10		coord: 88..110 e-value: 1.0E-7 score: 31.2 coord: 131..149 e-value: 9.6E-8 score: 31.3
None	No IPR available	CDD	cd00054	EGF_CA	coord: 171..208 e-value: 0.00115409 score: 35.305
None	No IPR available	CDD	cd00054	EGF_CA	coord: 130..160 e-value: 2.68515E-5 score: 39.9274
None	No IPR available	SUPERFAMILY	57196	EGF/Laminin	coord: 81..127
None	No IPR available	SUPERFAMILY	57196	EGF/Laminin	coord: 169..222
None	No IPR available	SUPERFAMILY	57196	EGF/Laminin	coord: 128..171
IPR018097	EGF-like calcium-binding, conserved site	PROSITE	PS01187	EGF_CA	coord: 210..236
IPR018097	EGF-like calcium-binding, conserved site	PROSITE	PS01187	EGF_CA	coord: 171..195
IPR000152	EGF-type aspartate/asparagine hydroxylation site	PROSITE	PS00010	ASX_HYDROXYL	coord: 145..156
IPR000152	EGF-type aspartate/asparagine hydroxylation site	PROSITE	PS00010	ASX_HYDROXYL	coord: 186..197
IPR013032	EGF-like, conserved site	PROSITE	PS01186	EGF_2	coord: 195..208

Blast

[Close]

BLAST of TCONS_00053462-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 3.494e-35
Identity = 71/167 (42.51%), Postives = 93/167 (55.69%), Query Frame = 0

Query:   84 RICQDVNECEYVR--CGKNRECINLLGGYKCKQVNCSKGFELKND--RCHDIDECATKDVCGKGRCRNYWGSFYCYCNHGYKPCQKTKKCIDVNECESNFRRCAYECMNTEGSYKC--QCPKGY-KSQGPYCYDVNECSSGEHTCTGMEDCVNTKGSFQCVTYKCPK 243
            R CQD++EC   R  C   ++C N +G Y+C  V C  GF   +D   C DI+EC     C + RC N  GSF+C C  GY+   K +KC+DVNEC  N  R    C NT G YKC   CP G  K++   C D++EC  G H C   + C NT+GS++CV   CP+
Sbjct: 5143 RTCQDIDECALGRHTCHAGQDCDNTIGSYRC-VVRCGSGFRRTSDGLSCQDINECQESSPCHQ-RCFNAIGSFHCGCEPGYQ--LKGRKCMDVNECRQNVCRPDQHCKNTRGGYKCIDLCPNGMTKAENGTCIDIDECKDGTHQCRYNQICENTRGSYRCV---CPR 5302

HSP 2 Score: 108.227 bits (269), Expect = 2.081e-25
Identity = 63/160 (39.38%), Postives = 80/160 (50.00%), Query Frame = 0

Query:   46 EKSPCDYPQFCLTKKNGTHRCIANCYYPRYKASYKNKRRICQDVNECEYVRCGKNRECINLLGGYKCKQVNCSKGF-ELKNDRCHDIDECATKDVCGKGR----CRNYWGSFYCYCNHGYKPCQKTKKCIDVNECESNFRRCAYECMNTEGSYKCQCPKG 200
            E SPC   Q C       H     C     +  Y+ K R C DVNEC    C  ++ C N  GGYKC  + C  G  + +N  C DIDEC  KD   + R    C N  GS+ C C  GY+     + C+D+NECE   + CA++C NT GS+KC CP G
Sbjct: 5198 ESSPCH--QRCFNAIGSFH---CGC-----EPGYQLKGRKCMDVNECRQNVCRPDQHCKNTRGGYKCIDL-CPNGMTKAENGTCIDIDEC--KDGTHQCRYNQICENTRGSYRCVCPRGYRSQGVGRPCMDINECEQVPKPCAHQCSNTPGSFKCICPPG 5344

HSP 3 Score: 107.071 bits (266), Expect = 4.706e-25
Identity = 64/189 (33.86%), Postives = 90/189 (47.62%), Query Frame = 0

Query:   86 CQDVNECEYVR-CGKNRECINLLGGYKCKQVNCSKGFELKND--RCHDIDECAT-KDVCGKGR-CRNYWGSFYCY--CNHGYKPCQKTKKCIDVNECESNFRRCAYECMNTEGSYKCQCPKGYKSQGPYCYDVNECSSGEHTCTGMEDCVNTKGSFQCVTYKCPKYMNRVGSNVCRK-QYCHKDDKQCQ 266
            C D +EC     C  +  C N +G Y C   +C KG  +  D   C DIDECA  +  C  G+ C N  GS+ C   C  G++       C D+NEC+ +   C   C N  GS+ C C  GY+ +G  C DVNEC   ++ C   + C NT+G ++C+   CP  M +  +  C     C     QC+
Sbjct: 5105 CADEDECAAGNPC--SHSCHNAMGTYYC---SCPKGLTIAADGRTCQDIDECALGRHTCHAGQDCDNTIGSYRCVVRCGSGFRRTSDGLSCQDINECQES-SPCHQRCFNAIGSFHCGCEPGYQLKGRKCMDVNECR--QNVCRPDQHCKNTRGGYKCIDL-CPNGMTKAENGTCIDIDECKDGTHQCR 5284

HSP 4 Score: 99.3673 bits (246), Expect = 2.239e-22
Identity = 78/277 (28.16%), Postives = 109/277 (39.35%), Query Frame = 0

Query:   40 DDCMRNEKSPCDYPQFCLTKKNGTHRCIANCYYPRYKASYKNKR--RICQDVNECEYVRCGKNRECINLLGGYKCKQVNCSKGFELKNDRCHDIDECATKDVCGKGRCRNYWGSFYCY-------CNHGYKPCQKTKK---------------------------------------CIDVNECESNFRRCAYECMNTEGSYKCQCPKGYK--SQGPYCYDVNECSSGEHTCTGMEDCVNTKGSFQCVTYKC-PKYMNRVGSNVCRKQYCHKDDKQC 265
            D+C ++    C Y Q C   + G++RC+     PR    Y+++   R C D+NECE V      +C N  G +KC    C  G  L  D          K   G  R  NY   +  Y         + Y+P Q  ++                                       C+D++ECE N   C +EC NT GSY+C CP GY+    G  C D++EC      C     C N +GS+QC+   C P Y     S  C K  C  +D +C
Sbjct: 5274 DEC-KDGTHQCRYNQICENTR-GSYRCVC----PR---GYRSQGVGRPCMDINECEQVPKPCAHQCSNTPGSFKCI---CPPGQHLLGD---------GKSCAGLERLPNYGTQYSSYNLARFSPVRNNYQPQQHYRQYSHLYSSYSEYRNSRTSLSRTRRTIRKTCPEGSEASHDTCVDIDECE-NTDACQHECKNTFGSYQCICPPGYQLTHNGKTCQDIDECLEQNVHCGPNRMCFNMRGSYQCIDTPCPPNYQRDPVSGFCLKN-CPPNDLEC 5527

The following BLAST results are available for this feature:

BLAST of TCONS_00053462-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00053462-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HMCN1	3.494e-35	42.51	Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2	[more]

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TCONS_00053462-protein (polypeptide) - C. hemisphaerica