vasa protein (polypeptide) - C. hemisphaerica

Overview


Name	vasa protein
Unique Name	TCONS_00053547-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	689

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00053547-protein ID=TCONS_00053547-protein|Name=vasa protein|organism=Clytia hemisphaerica|type=polypeptide|length=689bp
MADEWDEGTSSGNTGFGGGSSGGFGGGSSGGFGGDSNDNDDSGGSFRGGR
GRGRGRGRGRGRGRGGFGGSDNNDSNGGGFGGGFGGESSGGGFGSGGGGG
GFGDDSGGGFGGSSGGFGGDDSGGFGGDSDGDGGRGRGRGRGRGRGRGRG
RGGFGGGDGDAAGGGGFGGGDDTGEVDENGEPIRPLHEVDPDKPAPVTYV
PPEPSEAEEEIFQTIAQGINFDQYDNIPVEITGPGEMPTAVRSFEEAGLA
PGVLENIKKAKYTKPTPVQKYALPAVLAKRDLMACAQTGSGKTAAFLLPV
LTGILEHRDEFTSQLSEVQAPIALVIAPTRELATQIFNEARKFSHGTSIR
PVVVYGGVSVAHQLRQVEAGCHLLIGTPGRLKDFMGRRKITLENLKYLVL
DEADRMLDMGFMPDVKTIVSDFNMPEKEERHTLMFSATFPEQIQKLASDF
LNQYVFITIGKIGSTHSGIEQKVVEIEDSGKRDRLVDILGNEGTNRNLVF
VQTKRLADFLASYLCQNGFPTTSIHGDRYQQQREEALREFKRGEQTVLIA
TQVAARGLDIADVKQVINYDLPDEIEEYIHRIGRTGRIGNKGKAISFFTR
GKDDGLARALVKTLADAEQEVPDWLEEVAETALGTGYGPKGGRFASKDTR
DGGGGGQFNAMGNNDGWGGGETPAAGGGGGGAAEEDDWD

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_033801	XLOC_033801	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00053547	TCONS_00053547	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR014001	Helicase_ATP-bd
IPR001650	Helicase_C
IPR011545	DEAD/DEAH_box_helicase_dom
IPR000629	RNA-helicase_DEAD-box_CS
IPR014014	RNA_helicase_DEAD_Q_motif
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0005524	ATP binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014001	Helicase superfamily 1/2, ATP-binding domain	SMART	SM00487	ultradead3	coord: 261..472 e-value: 3.0E-64 score: 229.4
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 273..457 score: 30.088
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 508..589 e-value: 3.0E-32 score: 123.1
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 482..589 e-value: 5.2E-29 score: 100.8
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 468..629 score: 24.043
IPR011545	DEAD/DEAH box helicase domain	PFAM	PF00270	DEAD	coord: 266..446 e-value: 2.5E-50 score: 170.6
None	No IPR available	GENE3D	3.40.50.300		coord: 471..627 e-value: 2.4E-47 score: 160.1
None	No IPR available	GENE3D	3.40.50.300		coord: 199..470 e-value: 1.4E-59 score: 201.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..196
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 639..689
None	No IPR available	CDD	cd00268	DEADc	coord: 244..458 e-value: 4.62362E-93 score: 288.614
None	No IPR available	CDD	cd00079	HELICc	coord: 469..597 e-value: 2.40326E-41 score: 145.844
IPR000629	ATP-dependent RNA helicase DEAD-box, conserved site	PROSITE	PS00039	DEAD_ATP_HELICASE	coord: 399..407
IPR014014	RNA helicase, DEAD-box type, Q motif	PROSITE	PS51195	Q_MOTIF	coord: 242..270 score: 11.912
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 321..603

Blast

[Close]

BLAST of vasa protein vs. Swiss-Prot (Human)
Match: DDX4 (Probable ATP-dependent RNA helicase DDX4 OS=Homo sapiens GN=DDX4 PE=1 SV=2)

HSP 1 Score: 521.931 bits (1343), Expect = 5.629e-177
Identity = 309/686 (45.04%), Postives = 410/686 (59.77%), Query Frame = 0

Query:    8 GTSSGNTGFGGGSSGGFGGGSSGGFGGDS-NDNDDSGGSFRGGRGRGRGRGRGRGRGRGGFGGSDNNDSNGGGFGGGFGGESSGGGFGSGGGGGGFGDDSGGGFGGSSGGFGGDDSGGFGGDSDGDGGRGRGRGRGRGRGRGRGRGGFGGGDGDAAGGGGFGGGDDTGEVDENGEPIRPLHEVDPDKPAPVTYVPPEPSEAEEEIFQTIAQGINFDQYDNIPVEITGPGEMPTAVRSFEEAGLAPGVLENIKKAKYTKPTPVQKYALPAVLAKRDLMACAQTGSGKTAAFLLPVLTGILEHRDEFTSQLSEVQAPIALVIAPTRELATQIFNEARKFSHGTSIRPVVVYGGVSVAHQLRQVEAGCHLLIGTPGRLKDFMGRRKITLENLKYLVLDEADRMLDMGFMPDVKTIVSDFNMPEKEERHTLMFSATFPEQIQKLASDFL-NQYVFITIGKIGSTHSGIEQKVVEIEDSGKRDRLVDILGNEGTNRNLVFVQTKRLADFLASYLCQNGFPTTSIHGDRYQQQREEALREFKRGEQTVLIATQVAARGLDIADVKQVINYDLPDEIEEYIHRIGRTGRIGNKGKAISFFTRGKDDGLARALVKTLADAEQEVPDWLEEVAETALGTGY--GPKGGRFASKDTRDGGGGGQFNAMGNNDGWGGGETPAAGGGGGGAAEEDDWD 689
            G S GN GF   S+  F  G S GF  +S ND +D+    RG   RG              G  D N+S   G     G  S  G  G  G G    D         +GG  G       G  +GD  + R        G G  RGG+ G + +   G G        E  E+ +   P           VTY+PP P E E+ IF     GINFD+YD I VE++G  + P A+ +FEEA L   +  NI KA YTK TPVQKY++P +LA RDLMACAQTGSGKTAAFLLP+L  ++ H     S+  E+Q P  +++APTREL  QI+ EARKFS GT +R VV+YGG  + H +RQ+  GC++L  TPGRL D +G+ KI L+ +KYLVLDEADRMLDMGF P++K ++S   MP KE+R TLMFSATFPE+IQ+LA++FL + Y+F+ +G++G     ++Q V+++    KR++LV+IL N G  R +VFV+TK+ ADF+A++LCQ    TTSIHGDR Q++RE+AL +F+ G+  VL+AT VAARGLDI +V+ VIN+DLP  I+EY+HRIGRTGR GN G+AISFF    D+ LA+ LVK L DA+Q+VP WLEE+A +    G+    +G  FAS DTR G       +  N  G+   + P          +++ WD
Sbjct:   88 GKSFGNRGF---SNSRFEDGDSSGFWRESSNDCEDNPTRNRGFSKRG--------------GYRDGNNSEASGPYRRGGRGSFRGCRGGFGLGSPNNDLDPDECMQRTGGLFGSRRPVLSGTGNGDTSQSRS-------GSGSERGGYKGLNEEVITGSGKNSWKSEAEGGESSDTQGP----------KVTYIPPPPPEDEDSIFAHYQTGINFDKYDTILVEVSG-HDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMM-HDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVEILRNIGDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIAFSTYIPGFSGSTRGNVFASVDTRKG------KSTLNTAGFSSSQAP-------NPVDDESWD 724

The following BLAST results are available for this feature:

BLAST of vasa protein vs. Swiss-Prot (Human)

BLAST of vasa protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DDX4	5.629e-177	45.04	Probable ATP-dependent RNA helicase DDX4 OS=Homo s...	[more]

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vasa protein (polypeptide) - C. hemisphaerica