TCONS_00071443-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00071443-protein
Unique NameTCONS_00071443-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length204

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00071443-protein ID=TCONS_00071443-protein|Name=TCONS_00071443-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
MAHQKVDVKVVLLGKEYGGKTSLVERYIHERFNSNQPYQNTIGAAFGAKT
LHIDGKSVTLGIWDTAGSERYEAMSRIYYRGAKAAVVCFDLTDDNSWDRA
RFWIQEVHGHEEECKIYLCGTKRDLLEHQDRAIDYHDTTDYADTISAKLF
ETSSKTGENIEELFTEIATEYMKIGMPSVEDPNIVNMNQRTTQSEGGWKK
SCCG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_044371XLOC_044371Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00071443TCONS_00071443Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 112..125
score: 38.72
coord: 149..171
score: 34.39
coord: 8..29
score: 35.48
coord: 33..49
score: 25.53
coord: 51..73
score: 47.72
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 8..174
e-value: 4.4E-42
score: 155.8
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 10..174
e-value: 1.1E-9
score: 4.9
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 5..174
e-value: 4.5E-10
score: 27.5
NoneNo IPR availableGENE3D3.40.50.300coord: 74..172
e-value: 3.4E-28
score: 97.1
NoneNo IPR availableGENE3D3.30.70.1390coord: 6..73
e-value: 1.4E-21
score: 75.8
NoneNo IPR availablePROSITEPS51419RABcoord: 3..203
score: 27.046
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 7..167
e-value: 3.0E-22
score: 77.1
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 9..171
e-value: 4.2E-45
score: 153.2
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 4..172

Blast
[Close]
BLAST of TCONS_00071443-protein vs. Swiss-Prot (Human)
Match: RAB24 (Ras-related protein Rab-24 OS=Homo sapiens GN=RAB24 PE=1 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.369e-79
Identity = 119/207 (57.49%), Postives = 156/207 (75.36%), Query Frame = 0 
Query:    1 MAHQKVDVKVVLLGKEYGGKTSLVERYIHERFNSNQPYQNTIGAAFGAKTLHIDGKSVTLGIWDTAGSERYEAMSRIYYRGAKAAVVCFDLTDDNSWDRARFWIQEVHGHEEECKIYLCGTKR--DLLEHQDRAIDYHDTTDYADTISAKLFETSSKTGENIEELFTEIATEYMKIGMPSV--EDPNIVNMNQRTTQSEGGWKKSCC 203
            M+ Q+VDVKVV+LGKEY GKTSLVERY+H+RF    PYQNTIGAAF AK + +  ++VTLGIWDTAGSERYEAMSRIYYRGAKAA+VC+DLTD +S++RA+FW++E+   EE C+IYLCGTK      + + R +D+HD  DYAD I A+LFETSSKTG++++ELF ++A +Y+ +    V  ED   V++ Q+       +  SCC
Sbjct:    1 MSGQRVDVKVVMLGKEYVGKTSLVERYVHDRFLVG-PYQNTIGAAFVAKVMSVGDRTVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELRSLEEGCQIYLCGTKSDLLEEDRRRRRVDFHDVQDYADNIKAQLFETSSKTGQSVDELFQKVAEDYVSVAAFQVMTEDKG-VDLGQKPNP----YFYSCC 201
The following BLAST results are available for this feature:
BLAST of TCONS_00071443-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB241.369e-7957.49Ras-related protein Rab-24 OS=Homo sapiens GN=RAB2... [more]
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