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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005368 ID=TCONS_00005368|Name=TCONS_00005368|organism=Clytia hemisphaerica|type=transcript|length=1860bpRun BLAST on NCBI protein sequence of TCONS_00005368-protein >TCONS_00005368-protein ID=TCONS_00005368-protein|Name=TCONS_00005368-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp MNARVLVAVVGVFVACGSNVFFLEHLVKFSPGCGHLVTFSQFFFTAAFRFRun BLAST on NCBI transcript from alignment at sc0000052:745101..755154- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005368 ID=TCONS_00005368|Name=TCONS_00005368|organism=Clytia hemisphaerica|type=transcript|length=10054bp|location=Sequence derived from alignment at sc0000052:745101..755154- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000052:745101..755154- >TCONS_00005368 ID=TCONS_00005368|Name=TCONS_00005368|organism=Clytia hemisphaerica|type=CDS|length=10857bp|location=Sequence derived from alignment at sc0000052:745101..755154- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005368 vs. Swiss-Prot (Human)
Match: S35B4 (UDP-xylose and UDP-N-acetylglucosamine transporter OS=Homo sapiens GN=SLC35B4 PE=1 SV=1) HSP 1 Score: 236.113 bits (601), Expect = 3.472e-71 Identity = 133/318 (41.82%), Postives = 205/318 (64.47%), Query Frame = 1
Query: 154 CGSNVFFLEHLVKFSPGCGHLXXXXXXXXXXXXXXXXXXKCGTVQPVVPLREYFFAVLLYFASSLTGNLAFLFNISMPIQMIFKSGSVMASMLLGILILKKQYSTSKYVSVAMITIGIAMCLLLSSADKPKKAE-EQGDMFS----FICGLSLLLVSLFTGARLGIAQQEVVSKFGKHPKEMTCYIHLLSLPFFIFFAKNIMNQLYIFSQAELEAVDWFPVKVPLVWIYFALNIFTQFLCXXXXXXXXXXXXXXXXXVILTLRKFMSLIVSIVYFRNPFTFYHWMGTLLVFTGTLIFSEVPQRMFAAKEKPDQGKKDD 1092
C SNV FLE L + PGCG++VTF+QF F A F+ G P +P+R Y V ++F S+ N A NI+MP+ MIF+SGS++A+M+LGI+ILKK+YS KY S+A++++GI +C +S+ ++ + D F ++ G+ L +L AR+GI Q+ + +FGKH KE Y H L LP F+F A +I + +F+++EL + V +P++W Y +NI TQ++C+ V LT+E ++L +T+++TLRKF+SLI SI+YF+NPFT +HW+GTL VF GTL+++EV + K +P + K +
Sbjct: 14 CCSNVIFLELLARKHPGCGNIVTFAQFLFIAVEGFLFEADLGRKPPAIPIRYYAIMVTMFFTVSVVNNYALNLNIAMPLHMIFRSGSLIANMILGIIILKKRYSIFKYTSIALVSVGIFICTFMSAKQVTSQSSLSENDGFQAFVWWLLGIGALTFALLMSARMGIFQETLYKRFGKHSKEALFYNHALPLPGFVFLASDIYDHAVLFNKSELYEIPVIGVTLPIMWFYLLMNIITQYVCIRGVFILTTECASLTVTLVVTLRKFVSLIFSILYFQNPFTLWHWLGTLFVFIGTLMYTEVWNNLGTTKSEPQKDSKKN 331 The following BLAST results are available for this feature:
BLAST of TCONS_00005368 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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