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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006149 ID=TCONS_00006149|Name=TCONS_00006149|organism=Clytia hemisphaerica|type=transcript|length=5450bpRun BLAST on NCBI protein sequence of TCONS_00006149-protein >TCONS_00006149-protein ID=TCONS_00006149-protein|Name=TCONS_00006149-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1080bp MAIRKCFRFFLILLFIININLIHCLTPIRLGVAIPWSGKNWDAGPRFASGRun BLAST on NCBI transcript from alignment at sc0000063:183126..224199- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006149 ID=TCONS_00006149|Name=TCONS_00006149|organism=Clytia hemisphaerica|type=transcript|length=41074bp|location=Sequence derived from alignment at sc0000063:183126..224199- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000063:183126..224199- >TCONS_00006149 ID=TCONS_00006149|Name=TCONS_00006149|organism=Clytia hemisphaerica|type=CDS|length=3243bp|location=Sequence derived from alignment at sc0000063:183126..224199- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006149 vs. Swiss-Prot (Human)
Match: ANPRB (Atrial natriuretic peptide receptor 2 OS=Homo sapiens GN=NPR2 PE=1 SV=1) HSP 1 Score: 587.415 bits (1513), Expect = 0.000e+0 Identity = 382/992 (38.51%), Postives = 543/992 (54.74%), Query Frame = 2
Query: 518 LIGPACSDGCRSGSYLADNWNVPMISYGCAASFFSVPQK-FPNFARTVGVYSKSGHIFVNLMKTYKWTRIAILTPSSGIWSSIMNGVRNDIEAEDGLQVPFFQNFNKD--SVSDSFLKRQLEDAKEQAH-------IFLLGGYKATILKVMKQAKKIGLLRPGYAFISYELL-----------IDKCVLPNKTEAEDCELLEG---MLDISLFVPQNEAYQKFAN--LVRKKMAEEPFNRFMAPEEPVEIXXXXXXXXXXXXXXXXNKTLNMNGSILDGRLIINNTLNYTFEGASGTVVIDHVGDRASALVV---KNVHNGRYQRTANFFVTEKRLQVLNNTVVWPGKTTAIPLGRPEC--DFDNRLCPPTEPWVYVVAXXXXXXXXXXXXXXXXXHHRRKLFEQALMSQTWRVKFSDIQF--NQKHHQGRMNHAGSICFTKXXXXXXXXXXXGGVNTVSAMMPLLQNHSHGSQQSIESIVHETQVFTRIGLFQGNYVAIKQLFKSSVQLTRXXXXXXXXXXXXQHQNVNSFIGACVDSPNICILTQYCNKGSLQDVLFNEDLKLDWMFQVSIASDIARGMQYIHNGASIGVHGRLKSTNCVIDSRWTCKITDIGLFKFKDGQAVDEEVGIDHEYDALLWTAPEHLDN--MKEERSKEGDVYSYGIILQEIITRGSPYSMYE-NLSAKEILDRVKKCSNPRFRPVVPEDYGHPEYHDLMSQCWEEAPTSRPRFDEIMKALKKLNGGKNINIVDNMIKMMEKYTDHLEELVAERTKQLEDEKAKTDELLYRMLPRTVAEQLKHGEAVSAETFDMVTIFFSDIVGFTKLAAESTPMQVVDLLNDLYTCFDQIVDQHHVYKVETIGDAYMVVSGLPERNGNRHAGEIARMSLDLLSATTTFVVRHKKEYRIQLRIGIHSGSCVAGVVGLKMPRYCLFGDTVNYASRMESSGLALRIHVSPECHEVLTELGGYHLIERGPVSMKGKGTIVTYFLAG 3385
L+GP C S + A +W +P+++ G AS FS + RT K G V L + WT A L + R D F+ SV R+ ++ H I + G + +++ QA++ L Y F ++ + N+T + L E +L I+ P N YQ+F N L+R A E F + P + + A +D LLYA LN+T+ G+ DG I+ + G +G VV+D DR + V+ ++ +G +Q A++ EK++ + W A P P C D D+ C T + + T I ++ + + R+ + E+ L S WR+++ ++QF ++++H+G AGS T+S L+ S+GS + + Q+F G F+GN VAIK + K ++LTR++L ELK + ++Q ++ FIGAC+D PNICI+T+YC +GSLQD+L N+ + LDWMF+ S+ +D+ +GM ++HN + I HG LKS+NCV+DSR+ KITD GL F+ D+ + Y LWTAPE L + ++ DVYS+GIILQEI R P+ + +LS KEI+ +V+ P FRP + + E LM +CW + P RP F +I +++ N +I+DN++ ME+Y ++LE+LV ERT+ +EK K + LLY++LP +VAEQLK GE V AE FD VTI+FSDIVGFT L+AESTPMQVV LLNDLYTCFD I+D VYKVETIGDAYMVVSGLP RNG RHA EIARM+L LL A ++F +RH+ +++LRIG+H+G AGVVGLKMPRYCLFGDTVN ASRMES+G AL+IHVS + L ELG + L RG V MKGKG + TY+L G
Sbjct: 96 LLGPGCVYPAASVARFASHWRLPLLTAGAVASGFSAKNDHYRTLVRTGPSAPKLGEFVVTLHGHFNWTARAAL---------LYLDARTDDRPHYFTIEGVFEALQGSNLSVQHQVYAREPGGPEQATHFIRANGRIVYICGPLEMLHEILLQAQRENLTNGDYVFFYLDVFGESLRAGPTRATGRPWQDNRTREQAQALREAFQTVLVITYREPPNPEYQEFQNRLLIR---AREDFGVELGPSL-MNLIAGCFYDGILLYAEVLNETIQEGGTREDGLRIVEKMQGRRYHGVTGLVVMDKNNDRETDFVLWAMGDLDSGDFQPAAHYSGAEKQIWWTGRPIPW--VKGAPPSDNPPCAFDLDDPSCDKTPLSTLAIVALGTGITFIMFGVSSFLIFRKLMLEKELASMLWRIRWEELQFGNSERYHKG----AGSRL------------------TLS-----LRGSSYGSLMTAHG---KYQIFANTGHFKGNVVAIKHVNKKRIELTRQVLFELKHMRDVQFNHLTRFIGACIDPPNICIVTEYCPRGSLQDILENDSINLDWMFRYSLINDLVKGMAFLHN-SIISSHGSLKSSNCVVDSRFVLKITDYGLASFRSTAEPDDSHAL---YAKKLWTAPELLSGNPLPTTGMQKADVYSFGIILQEIALRSGPFYLEGLDLSPKEIVQKVRNGQRPYFRPSIDRTQLNEELVLLMERCWAQDPAERPDFGQIKGFIRRFNKEGGTSILDNLLLRMEQYANNLEKLVEERTQAYLEEKRKAEALLYQILPHSVAEQLKRGETVQAEAFDSVTIYFSDIVGFTALSAESTPMQVVTLLNDLYTCFDAIIDNFDVYKVETIGDAYMVVSGLPGRNGQRHAPEIARMALALLDAVSSFRIRHRPHDQLRLRIGVHTGPVCAGVVGLKMPRYCLFGDTVNTASRMESNGQALKIHVSSTTKDALDELGCFQLELRGDVEMKGKGKMRTYWLLG 1038 The following BLAST results are available for this feature:
BLAST of TCONS_00006149 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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