TCONS_00006587 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00006587
Unique Name	TCONS_00006587
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2689

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000069:322600..334892+
coding sequence from alignment at sc0000069:322600..334892+

transcript sequence

>TCONS_00006587 ID=TCONS_00006587|Name=TCONS_00006587|organism=Clytia hemisphaerica|type=transcript|length=2689bp
gaaaaaaataacgaagattTTAAGAAAAGAAGAAGGATACTGTCCAtcat
aaaaaggaaaaaatgaacCTCCCAAAGTTGTCAACCACAATAGTTGCTTG
GCTGGCAATTATGGTATGCTGTGCCAACTcggaaaatatttggattaagg
TAATCACAACAAGGAGCGAGTTCTATGAGCCAGGCTTGGAAATCGCAAGG
AAACATATCATGAAAACAAATCTGCTTGGAAAACACAAACTTCAATTCAA
TTATGTTAGGCCTGGCACAACGTTGATcttgtttttgaaacaattagcAG
CGTTTAATATGAAACATTTCCTTACCATTGGTCCAGCTTCGTCACGTGAT
ATCACTCTGATAAGCCCATTGGTTACTGAGAACTCAATGATCcagtACAA
TCTGAATGGATTGGTGAACGATTTTGAGGACGTGAACATGTACCcttatt
tattcaatttttgtgTGCTTTTCTCTGGATATGAGCGAGCTCTGACCACC
TTTCTTCACCACCATAACTGGACACGAGTCGCTTTCATTTATATATCGGA
CACAACTAAATTCTCGGACACCTATTATAGGTCGGCGACAAGTACAGAAG
TACACGTTCGGGAACGCGGAATAAACGTAGAGCGTTTAGAAAAGTTCTCA
ATGTTTGATGACAGCACGAGAGCGAATGTCCCTCAATGGAACCGAATCCT
AAAAAGCACGAGGGATGATAATGATCTTCGAATTTATGTTTATTTCTTCA
ATGTCTTGGCCATGCGATACACGCTCTGCGAGTTGTACAAGCTTGGAATG
TATGGTCCAAAATATGTTCATATCGTGTTCCATTCCAAGtggtttgtata
ttataaagGATTCGCGCGCGGCCGAACGAATTGTACGGTAGAACAAGAGA
ATATCGTGTTGAAGAATTTCGTTTTCATGAATCGAGCATCGAAAAGAGAC
GATGATATCTTGACTGTTGCTAATTTGACAGTTGGCCAAATTAATTCAGA
AGTTAAAGCAAGTTTCAACAAGAAGTTTCCAAAACATATCTACCCCAACG
AAAAACTGGATTCCGAAAGTCTTTATTATTATGACGCATTGTGGAGTTTC
GCGAAATCTATCAACCATATTTCGAAAAAGCATCCACGATTCGTAGATAA
CTTTGATAACTGGGAGAAAAATACTACTCGTTTGAGCATTATGACGGATG
CGATGTCAAATCTTGATTTCGAGGGAGTAACTGCAAAGATCAAATTCCAC
CAAAAAGGCAATATCCGTCGTTTGAACAGTAACATCGACTTCAAGAAATA
TGACGGAAATTCATCCACCACAAAGACGGGAAAAGTCAACACGACATTAA
TGGACGTCATCGGTGATGACGGAAATTATGTTGACCGTTTTCGTACTGAA
TGGGAATTCCCCATCCCGTTAGATGCACCGAAGATCGTAGAATCAACCAA
GGAATACGGCGAAACTGTTCTCATCATTATATGGCTTTTTGCCGGTGCCG
GCATTTTGCTATGTCTCATCTTTCTGACGATTAACATTTATTACAGACAA
GTCGATTTCATTAAGCTGTCATCACCAAACATTAACAATTTGATCTGTGT
TGGTGGAATCGTCACTTATATCTCAATCTTCCTCGGAGGTCTGGACACTA
CAATAGTCGATGTTGAGAAAGTTCCATTGTTCTGTAATATTAGTATCGTG
GTACTGTCAGTCGGCTTTACATTAACGTTTGGATCATTGTTCAGCAAGAC
GTGGAGAATCTATCGTATTTTCACCAAGAAGAATTCCATTAGATCGGTGG
TAATTCGAGACACACATTTGTTTGGTGTTGTCATGGTGCTATTGCTAATC
GATTTCGcgatgtttgtttgttttttggcCATTGCTCCATACCACCTTCA
AGCACAAGTTATTGATGAAAAGCTAATTCCATCGGAAGATATCATCCTGA
AAACAATAATCAATCGATGTACGAGCGACCATCAAAATTGGTTCTTAGGA
GCCATGTTTTTTTACAAAGGTCTTCTCATGTTGTTTGGACTCTTCTTAGC
GTACGAAACGAAAAATATTAAGGTGGAATCGATCAATGACTCGAAATATA
TCGGTTTTGCAGTGTACAACGTTTCACTCTTCGCCACTCTTGGTTCAATC
GTGTTCACGTCTCTTTACAATACCGAGCATTACCGTGCATCTTATATCGT
ATTTTGTGTGTGTATTATCCAATCGACTACAGTGACATTGTGCCTCATCT
TTGGTCCGAAGGTTTGGAATATTTTGAAAGATTACAAAGATCCGAATTTC
CATAACGGACGACCTGTTATTCCGGGACAACATTATACGAATTCGAATTC
ACATTCGATGAAATCGGGATCTCAAAGTCAATCCGATGCAAATAAAGAAA
TGGAATCGGGAAAGTCGGAATACTCGAGTGAAAAGTGAGGATAAAGTGAA
GGGATGCAGAGGTGAAGTAAAAAATTCGGGGAAAATCGGATTTGATGAAA
CCACTGTAAGAAATGAAGTCGAAAAAGTGTTATTAtcaaataatgatgaa
aatagaTTGAAATCATCAACAAAAGTTGACGAATTAATAAAGAAGAGTAA
AAAGAATCGAATAAAAAAAACGACGTGTATATCAAGCATTTTAGGAAATA
TGGGCTTATTTTAGTACTTTGTCGGGGATAAATAATCGG

Run BLAST on NCBI

protein sequence of TCONS_00006587-protein

>TCONS_00006587-protein ID=TCONS_00006587-protein|Name=TCONS_00006587-protein|organism=Clytia hemisphaerica|type=polypeptide|length=791bp
MNLPKLSTTIVAWLAIMVCCANSENIWIKVITTRSEFYEPGLEIARKHIM
KTNLLGKHKLQFNYVRPGTTLILFLKQLAAFNMKHFLTIGPASSRDITLI
SPLVTENSMIQYNLNGLVNDFEDVNMYPYLFNFCVLFSGYERALTTFLHH
HNWTRVAFIYISDTTKFSDTYYRSATSTEVHVRERGINVERLEKFSMFDD
STRANVPQWNRILKSTRDDNDLRIYVYFFNVLAMRYTLCELYKLGMYGPK
YVHIVFHSKWFVYYKGFARGRTNCTVEQENIVLKNFVFMNRASKRDDDIL
TVANLTVGQINSEVKASFNKKFPKHIYPNEKLDSESLYYYDALWSFAKSI
NHISKKHPRFVDNFDNWEKNTTRLSIMTDAMSNLDFEGVTAKIKFHQKGN
IRRLNSNIDFKKYDGNSSTTKTGKVNTTLMDVIGDDGNYVDRFRTEWEFP
IPLDAPKIVESTKEYGETVLIIIWLFAGAGILLCLIFLTINIYYRQVDFI
KLSSPNINNLICVGGIVTYISIFLGGLDTTIVDVEKVPLFCNISIVVLSV
GFTLTFGSLFSKTWRIYRIFTKKNSIRSVVIRDTHLFGVVMVLLLIDFAM
FVCFLAIAPYHLQAQVIDEKLIPSEDIILKTIINRCTSDHQNWFLGAMFF
YKGLLMLFGLFLAYETKNIKVESINDSKYIGFAVYNVSLFATLGSIVFTS
LYNTEHYRASYIVFCVCIIQSTTVTLCLIFGPKVWNILKDYKDPNFHNGR
PVIPGQHYTNSNSHSMKSGSQSQSDANKEMESGKSEYSSEK

Run BLAST on NCBI

transcript from alignment at sc0000069:322600..334892+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00006587 ID=TCONS_00006587|Name=TCONS_00006587|organism=Clytia hemisphaerica|type=transcript|length=12293bp|location=Sequence derived from alignment at sc0000069:322600..334892+ (Clytia hemisphaerica)
gaaaaaaataacgaagattTTAAGAAAAGAAGAAGGATACTGTCCAtcat
aaaaaggaaaaaatgaacCTCCCAAAGTTGTCAACCACAATAGTTGCTTG
GCTGGCAATTATGGTATGCTGTGCCAACTcggaaaatatttggattaagg
TAATCACAACAAGGAGCGAGTTCTATGAGCCAGGCTTGGAAATCGCAAGG
AAACATATCATGAAAACAAATCTGCTTGGAAAACACAAACTTCAATTCAA
TTATGTTAGGGTAAGTAAGCgacccagctagcacacaacgttgtttcaac
gtttttctaacattcacaacgtcaatataacgttagataaacgttgaaac
aaccttgtgtgccagctggtgaGTCAGCCttctttaaatgtttttttatt
ctacATTTTTTTTCCGCACACGACGAAAATTACAAACGAAcgagcttgtt
tttttttaagggaTCTTCATTCGTAAATGAATCTTTTGGGACTACGTGAA
AGTATTTGTTCAAACTTGTGATTTAAAATCCGAGTCTCAAGATGTTCTAT
ACCTATTTTccattttaaagatttcttgAATGATTACAATAACATACCCG
TACCATGTGGGGAAGTTTTCTGTTACTAGTATTTTCTTCTTGTTCTTGTT
ATGTGTTTTTATTGCAACGGCACAACCCCTATCTATTTTAAATGCCTATG
AAATATCAATGAAAGAGCTTTGAGCCTAAAAGCTTTGAATCAAAGAATAA
ATCAACAGggccggcggaacaaccgtaaaagtgggaaGGCTGAAGGCTCA
TAATATTCgttaggaatttgaaaaaaaatctcatttgctcaaaagtgggg
aggctgaaggctcccAAGTCTCCACGCTTCCGCCTGGCCTGATCAATTTC
ATTCTAATTTTCATCACATTTCAGCCTGGCACAACGTTGATcttgttttt
gaaacaattagcAGCGTTTAATATGAAACATTTCCTTACCATTGGTCCAG
CTTCGTCACGTGATATCACTCTGATAAGCCCATTGGTTACTGAGAACTCA
ATGATCcaggtacacattttttataagaacgttcaACAATGCTTAAAGCC
TTtgtatgttcttaactttttgatttttaaacctaaaagtgttcttaaca
tgctcttattttcaccgttttcggagtgtttttgtccattttccggcatt
tttgaaTCCACAAAcccttacaatgttcttaacttgttcttattaatTTT
GTCATCGAAGCCGTAAGTTCTTTATaaagattgttcttataaaaaagcgt
gtattagcTTGTATAAAACAGCCACATggtaaagtaaataaaaaaatcca
gggtggtctggtttttcgagtgtaaatGTCCAGGGTGTACAGTTAAAATT
ccatttgctttgttttttcttacagtACAATCTGAATGGATTGGTGAACG
ATTTTGAGGACGTGAACATGTACCcttatttattcaatttttgtgTGCTT
TTCTCTGGATATGAGCGAGCTCTGACCACCTTTCTTCACCACCATAACTG
GACACGAGTCGCTTTCATTTATATATCGGACACAACTAAATTCTCGGACA
CCTATTATAGGGTAAGTCGCTGAATTTTTATTGCTGGAAATGCACGAAGA
TCTCTTGTTtaaaaataccttatcggggaaaaaaatgtcgggagAAAGTG
ACGAacattttgagggggtgacgaaatttttccccgacattttatcaccc
gaccaaaacttgtacccgatttttttatccccaacTAAAACATTTACCCA
AAATTTTATACGGcaaccaaaatttaaatttaattttttacacctttatt
taccgCAATTgttgctttaaacgtcgaattacaagatccattttcgagct
agtgaaggaaaccatttcttttggacaatttagtcgggtgaaagtgacga
atttgaaatttttgtcggGAAAAAGTGACTAAAATGACTCTCCCCGATAA
AAAAAaaccgactaaataaaactctgacattttttccccgataagataAT
TTACAGTTAGCTATTTTGGAATCCCTTGAACTGCATGGTAAAATGATGGT
AAGACTGAAGGGTTCAAAGACCTACAAGGAGCAACAAATATGTTCGTAAC
TCGTCAGACAAGGGAATCATATGTATAAACTATGTACCATCGCCCAATAA
TAGTCAAGAAAATTTCATCGTAAGCTGCGTTACGGCTTTGAAACAAAACA
CACAATTAAATTCGTGAAATTCGTGacataatgttttatacggaagcatc
CAAAAAAAGACCGGGTTTTTACCACTAATTTTGAATCCAAACAATAAAAT
TAGTTGCAAACGCCCGGCCTAATTTGGGtacttccgtataaaacattacg
caATGAATATGATTAATAACATAATTTTCGATATCATTTTAATTCTCTTA
TTTTATAGTCGGCGACAAGTACAGAAGTACACGTTCGGGAACGCGGAATA
AACGTAGAGCGTTTAGAAAAGTTCTCAATGTTTGATGACAGCACGAGAGC
GAATGTCCCTCAATGGAACCGAATCCTAAAAAGCACGAGGGTAAGATTCG
AAACATCTTTGatacaatagaccttatcggtgtttttgatttttttaaaa
cagcattgtgggattgtttcgggaatattacaatagaattctctCGAGGT
actcctaagagatttctattgtaatacccccgaaaacaatcccacaatgc
atcgcttttttagaaaaataaaaaacttcgaTAAGATCTATTACTTAAGT
TTAAATGTTTgagcgatggccgagtggtcaaAGGCGTAAATGCTACAAAC
CAGGGGTtcgtggttcgaatccccgccCGTTataatgttccgttcagttc
attgATAGCCGAGCTGGCTGGTCGTGTACTCCGTGAAAACGATCGAAGGT
CTGTCCTAGGCTACTGGGCTATCCGCTTCATATATCGACTCTATGTTTAA
GCCTGCATTGGATTTAAAGTATAGTGATTGTAACGTGGTAGTCTCCTTTC
TGCTGGAAATTTGTTATGTGCATCATAGATATTTATCTATTTATCTATGA
CTATTTTTTCGGGGTCGACAGCTAGCTAGCTTGGCTATCTTAGACCTGAA
CAGGACATTGGAAGGAGCATGAATCCGAACCGTGAACTTTTAATTTAAGG
CACTGACGAATTGACCTAAAGCTTATTTTAATAGTAAAACGTTAAGGCGT
CTTATAGCCTTTGTTTTGAGATTTTGTGCTATGTCAAACATGATGATAGA
CATAAAACTTGTTATCAGCATACCCAGCCgacacacaacgtcaaaacaac
gtccatttgacgttcataacgtccaaataacgttatttcaacgctaaaat
aacgttgtgtgtcagcttgGATGACGGGCgtaatttctttttctcttttc
tttgcACTATAGGATGATAATGATCTTCGAATTTATGTTTATTTCTTCAA
TGTCTTGGCCATGCGATACACGCTCTGCGAGGTAGGTTGTTTTTATCTCC
TTAATGTTGTTTTTATCTCCTCAATGTTGTCAGCACATTTTCTGTGACAT
TGAGTTAAAAGCGTaaagtagaatctctaacctttcccaggcaagaaaag
tgAATCCACTTATTNTTTTTATCTCCTCAATGTTGTCagaacattttctg
tgacatTGAGTTAAAAGCGTAGGGtaaaatctctaacctttcccaggcaa
gaaagtgaagccacttatttcccggCTTGAAAGTCAATGCTCTGCGATGT
AGGTTGATTTTATCTCCTTAATGTTAAGGTCATGTGGTACAAGCTCTGTG
AGGTAGTTTGCTTTTATCTCCTCAATATTGTAGCAATGTGGTACCAAAAT
CATGCTGATCATGCGAGGGAGGTTACACCATAACTGTTTTTTTTGTGTTC
AGTCCCATGAGATTTAGACTATTTAGACCTCGGACAATCATTGTACTCAA
TATTTTATTTCCTGTTCCCTTCAGTTGTACAAGCTTGGAATGTATGGTCC
AAAATATGTTCATATCGTGTTCCATTCCAAGtggtttgtatattataaag
gTAAAACTGTTATTGAAACTAATACCTCTGAACTCATTGACAGTAACTGT
AAATCTCCAAACTTTtgtacagttgagtctccataactcgaacacgcaag
AGGAAcgctaatttgttcgaattaaggaagTTTAGAGTTTTaagagttaa
ggagacattcgatttatagaggtttgagttaaaGAGGCTCCACTGTACcc
atttaaaaattaaaagttttttaatgatttatattttcattttcattccc
ACTATAAATTAAAATTAGCTCTTTTCTTTTCGGAGATTTTACTATTTCGG
TTATTTACTAGAAtgttatttttccattttggtaTGATTTGGAGGCTGAG
TTTTTGTCTTTGACATTTTCGCCCATGAATCTCAGACTTTttccgtaaaa
caacaaataaacTTAATGTTTCACCTCAAGAGTTTTAAAACTTGTACAAT
ATTGAGATttccaattcatgatatgcaccattgcaatgtcttccaagaac
ccaatagctgattggttgaaagtaacgttctaactgattttacgtcattt
ACAACCATCAGATGTTGGGTCcttgatgtaatgtcagaagacattgcaat
ggtgcatatcatgaatagcaaaATATTAATCTCTTTGATACAAACCACTA
AACACTgattaaaatcttatttttcgTCTCATTCCGCCACAGGATTCGCG
CGCGGCCGAACGAATTGTACGGTAGAACAAGAGAATATCGTGTTGAAGAA
TTTCGTTTTCATGAATCGAGCATCGAAAAGAGACGATGATATCTTGACTG
TTGCTAATTTGGTATGTGTAGAACGTCAACATCCCTAATTgcgaccatgt
tcacacgttatcGTTCCGTTTCgttccggtatgattttcgttacggatcg
agagtgttcatattggtttcggaacgtttcggagcaaggaAAAGGAGCAG
TTCTGCTctaatgaaaaaagtggagcaaaaccgtttcgatctgttttgct
ttgtaacgtcttctattttgacgtttcgaattttgatgctcgaacttgtt
tcggaaccgttttgaaacggaacggaacggaaccgtaaccaTGGTCATAG
TCATTGGTTAAACTCGAATCCAGTCCCTTTGcctaatttttttatatact
aATAGCGCCCACGAAAGGGTTGTATCGCGTCCACCAGTAAAGTATAAAAA
GTGACGCAAGTGGCTCTGGTGTAAAACAGAGAATGAGCTAACGAGAATGT
GCTAACAGATAGAGAGGGACTTTGGAAAGATCTAAACATACTCTAAGGTC
TCGAATAAACGTCCCCACCCGGttatcgattttggacccacccgttctta
ttaagaccccccccccccgttatTTTCAGCTACAGCAAGCTGAAAGGGTT
ATTCGGACCCtctactattcgggaccttaaaGTAACTACTGTATTGTTTC
GTTCTATTTGTTCTTTAGTTctatttttttcagtgattttaaAACCGATA
ACGTACGTTGACGGATTAGTGATTTTAGTTTTACACAAAATTCTGTCTTT
ATGTCTTACTTAAACCTTCAATACTTCTAGAATATAGAACTTTTTAGCTT
GCAATATCTagctattttctatttttcttcgTCTCGTTCACAGACAGTTG
GCCAAATTAATTCAGAAGTTAAAGCAAGTTTCAACAAGAAGTTTCCAAAA
CATATCTACCCCAACGAAAAACTGGATTCCGAAAGTCTTTATTATTATGA
CGCATTGTGGAGTTTCGCGAAATCTATCAACCATATTTCGAAAAAGCATC
CACGATTCGTAGATAACTTTGATAACTGGGAGAAAAATACTACTCGTTTG
AGCATTATGACGGATGCGATGTCAAATCTTGATTTCGAGGGAGTAACTGT
AAGTATTGTATTCTTTCCAGTGAAAATAATTGCGGGTGTTCTAAGCTCCA
cagcaattcacgcattcacgcatattttctttttcaattttcacgcattc
ccgCAACCAAACAATCCCATTCGCGCAAACCGTTTGGGGGCGGACTTTTT
TAATCGTCTGCTCTAggcttcttgttttttttaatctaaacCAAAACCTA
ACCTTAACCCTAGTAAATATTAGTTGTTTAGAGTTTTGGAGGTACAATTT
CGGACCCCCGCCCAttaataagattttgaaaaatattttggaccCCTCCC
CTCCCTCTTTTATTTAGACTCCCTACTATTCGGGACCCTAGAGTATGtcg
ctttaaaaaaaatttggttaCTTTACTTGACCTGTTGCGAAGTTGTATTT
GAAAACCCAAAAGCTTAAGAAACTCTACTATTAATTTTTACACAGGCAAA
GATCAAATTCCACCAAAAAGGCAATATCCGTCGTTTGAACAGTAACATCG
ACTTCAAGAAATATGACGGAAATTCATCCACCACAAAGACGGGAAAAGTC
AACACGACATTAATGGACGTCATCGGTGATGACGGAAATTATGTTGACCG
TTTTCGTACTGAATGGGGTGaggaaaatctttaaagcgctgCATTTTCTA
AATAGATCCTCTCTTATtcgatcattttcaaaattagattttcctcgaat
aatggagcgtattgAATAGAAGAACATCGTTTTTGAGAGGTCttttgttg
acggtgacttccaatattatcgaataatggggTGTATCAATTATTAaaac
atcgaattagagagtgtcaactgaaATACATTTTCAGAAAGGCACTGAAA
AGTTTTGGGATGACAAGATTATTCTTCAAATGATATTCGATCTTCTACCT
CTTGATGTATCAATATCCTTGAatagttttgttttttaaagataaaatta
TCAATCAGCTGAATTCGTTCTTTTAGAAAGTTTAACTTTCGCCACGTGGT
AACTGTAAAATGTACTCAgttaaaacacccctgtatctCATAGACCCGCA
GGACACTTCAGCCCCATTGGGAAATATGGGCaaatggaaaaaatacccta
cattttCAGCCCAACTATAAAATTGACGATTCAACTCCCATTTAATTGTC
ATTAGATTTTTGTTacctgagaacaatagaatttctatccccgttGGGGT
TTCCAAAGAAACTTTCCACCTCCCCGCTGTAagaagaagttccaccgggg
ctaccttatcggggaaaacttcgtcggggaaaattttcgtcggagaaaat
tttcgtcggggaaaaatattcgttacttgctggtagttggtaaacgcatt
aaggccggggaaaattttcgtcggggaaaaatattcgtcatttggccaaa
atttcgtcacttttccccgacgaagttttccccgataaggtaataaattt
tcaaatttttaaacaaacatttctcctcTAGAATTCCCCATCCCGTTAGA
TGCACCGAAGATCGTAGAATCAACCAAGGAATACGGCGAAACTGTTCTCA
TCATTATATGGCTTTTTGCCGGTGCCGGCATTTTGCTATGTCTCATCTTT
CTGACGATTAACATTTATTACAGACAAGTCGAGTGAGTATTAGCTGGGAG
TACATAGACTGGATTGTGCGATTAAGTtacccggtagtatatggtagtTC
TCTATTTAGAGCTTTTGCTTCCAAGGCGGACTGTAACACTGTATTGCAAG
TGCAGTCTAGAGCTACCATAACTGCCTTTTTAAAGAAAGAAGGAACACCA
CCTGCGAAAGATGTTTGATGTAAAGGTTTAAAGAGGTGAAAGTGGTCATC
ATTTTTCTATTgcctacccagctggcacacaacgttgtttcaacgttcat
ctaacgttcaaaacgtctataaaacgttagatgaacgttgaacaACGTCA
AAGCTTGATCTGATAAACCGCTCAAACAACAGCTCTCTGAGCTAATTGGA
CAACTACCCAACCATTCATTTAAGTGTTGAGTAACGAAATCTGTTTTTCC
GAATTGTGCTCGTTTATCAGTTAAAATCAACTAGTGATAAACCCACTGGT
CCCGACAGTTCTCCCGGTCATTTTTATTTACTAGTCAATTGTGGTCAATC
TTAAACAGTTCTCAGACTCAACCATTGTATTTCACCGTAAATCCTTTAAA
CAAAGACCTCTGCTCCTCCAACCATCCCTCTGTTCCATCATACATTTCAG
TTTCATTAAGCTGTCATCACCAAACATTAACAATTTGATCTGTGTTGGTG
GAATCGTCACTTATATCTCAATCTTCCTCGGAGGTCTGGACACTACAATA
GTCGATGTTGAGAAAGTTCCATTGTTCTGTAATGTAAGTTGTTTCGGGTA
TAATCACTGACTTCAAAGCCCCGAAGGAGCTAGACTCAAGACTTCTAGAT
GGGAAATGATGCCACTTATTTCTCATTCTAAACGCCTGACCCACGTGATT
TTCACACGAACGCTAGATTAAAACATATCGCTAGACTTCGAAAAATATGc
caagtgaaaacaaaaaaagtgatTCAATTCTATATTCAATTCGTCATCCT
GCTAAACGCAGCGCGAATCTtcaggcttcactttttcttgcttgggaAAG
TTTAGATTCTTATTCATGGGGTTAAATTTaggtattttaggctttatacc
caacttttactactttgaccattaaattacttgaaattgaaaattcctca
gcattgttcttgaattgttcttatcaaATAGCGATTTTGAGcatcattgt
tcttataaaaaagagtgtaaccACTCTAGCAACTAGCTGAAATTTCTGTA
TTTCCAATTTTGTCTGTGAGTTTTATCAGCTTTCATAAATCAAGTTTTCG
AGAAACTTTTCGTCTAGTTTTAACTGAGAAAGCAGCTTTGTTATCTGGAG
ATACTCGAAATCGGTATAGAAGGGAGGAGTTAACCCTTTATGAATCATGA
CACAATTTCCCATCTTCTATTTGTAGATTAGTATCGTGGTACTGTCAGTC
GGCTTTACATTAACGTTTGGATCATTGTTCAGCAAGACGTGGAGAATCTA
TCGTATTTTCACCAAGAAGAATTCCATTAGATCGGTGGTaagaccactga
cctttatatatccctggaccaagctatatccaccatctttgatcggagtt
ctTTTTTGAATTGATACCCGTAAAGAAACCATTGCAGTGCTCGAACGTCT
CCTTAATTGTTCCcgtcagttaacaatgccttatcaACCTTACTCCTtaa
ctcgaaatttctttaTCTTACAGGTAATTCGAGACACACATTTGTTTGGT
GTTGTCATGGTGCTATTGCTAATCGATTTCGcgatgtttgtttgtttttt
ggcCATTGCTCCATACCACCTTCAAGCACAAGTTATTGATGAAAAGGTAC
ATAGCAATAACAATTAGTCATACTTATTTTCCAGTGTTTTGGACGGGATA
ACTACTCTTTCTTCTTGCTCTTGTTGCATACATAAATGATGGCACATTTG
CTCCTTGGGTGATGTTAGAACTAAGGTCTTTTCATTTGAATACCATTTCG
GCAAAAAAAGCTGAAACTTGGATACAAAGTGGAGACTCAATCATAGGGTA
TTGAATCTCAGGACAGCGGAGGTCACATGTTCAAACAGTGAATAGGAAAG
AGgataattaatttaatttttagtttatttatttctcaggtctattgacc
tctatgaaacaatcttacatctttacaatttatagatcttatcgaTAATA
CACTTTAAATACAAAATACAAGGCATTGACTTTCTTGTAAGACAAATGCT
TCTTGGTTTGCTTTTCACAACTCACTCCCATTAAATTGCTCTCACTTCCA
GCTAATTCCATCGGAAGATATCATCCTGAAAACAATAATCAATCGATGTA
CGAGCGACCATCAAAATTGGTTCTTAGGAGCCATGTTTTTTTACAAAGGT
CTTCTCATGTTGTTTGGACTCTTCTTAGCGTACGAAACGAAAAATATTAA
GGTGGAATCGATCAATGACTCGAAATATATCGGTAAGACCTTGATTCAAA
TTCATACCCTTATGACTCGCACACCCCCTGGGGTATGCTCTTTCGATCGT
TATAAATTCATCAACGTGAAATATCTAGTTGCCATCcacaattttttgta
agaacccagctgacacacaacattatttcaacgtttacttaacgttcaca
acgtccatataacgttagattaacgtcgaaacaacgttgtgtgccagctg
ggaattgATTCTATAAGAATATTGAACGAAGATTGCGACAGaggagatgg
agtttttataagatactttaataattggtcatttgaagtaataaaaatga
ctcGTTCTTTagtagaaaaagtaacaaaattgttgtaTTAATggctaacg
accaaccaaatcaaataagagcttgtaaaaacctCCACCTCGTCCTGATT
GCGAACACTATTCttatgggacaagctggagtttttacaagcttgatttg
gttggtcgttaagatgtaataaaagaatcttattactttttctaaagaac
gcgtcatctctatcacttcaaatgaccaaatagtgaagtatcttgtaaaa
actccagctcaccCCTTTCTTATATGCACATCAAATAAAAACATAGtagt
ctctttaattcgaacctctactattcaaatctttctataactggaacgaa
aatatttgtcccCTCAAGTCGAAATTAGTATAAAATACcttctataattc
aaatctttctataattggaagaaaattttttggccccttgaaaatcgaat
tagagagagtcaactgtacatCAAATACCAGATTAAcaatcaactctctc
taattcgaacctctattattcgtatctttctgtaattcgaactaaaatat
tgattCCCTCAGCTGGAATGAGATTTGAggtgaaaaaaatcaaaaaaagt
ccTAGATTCCTTGACTATCCACGTTAAATATCGCCTCTATTAGCTGCCGT
TTCGAAAGAGGACTGTGCCCGAAtctgcggacgttttcacagtttcactt
tcgttttcggtaTCTACAGGTTTTGCAGTGTACAACGTTTCACTCTTCGC
CACTCTTGGTTCAATCGTGTTCACGTCTCTTTACAATACCGAGCATTACC
GTGCATCTTATATCGTATTTTGTGTGTGTATTATCCAATCGACTACAGTG
ACATTGTGCNACGTCTCTTTACAATACTGAGCATTACCGTGCATCTTATA
TCGTATTTTGTGTGTGTATTATCCAATCGACTACAGTGACATTGTGCCTC
ATCTTTGGTCCGAAGGTAAGTTGACGGTGGTCATTTGGGCCATTCAATAT
AGGGGGTGGTCGAGCCTTTTctaatcaaaatttgaaaaatttcttttcat
aacTGAAAGTGACAAACTAAAATCAGTGTTTAACCCCTGGGTATTCTTTT
CGAATTACcatggaaatgttcgtccacccccctctctctgtatggatata
aaatggaatggcccattatcTTTGTTTCTTTGGACGTCGATTATCGAGTC
TATTTGTGACTGGAATTAACAACGTAGGCCCTCAGTCTGTTGACGATCTG
AAAAAGACTCATTTAAAAACCAACCTCGTACCCAGAGAAACTTGTATCAC
TTTTTCATTTTACTGATAGATGTGATACAATGATGAACGCTATTAGAATC
ATTAAATGCGATGATGTACAGTTAAAAACTGGGCTTCAGTTTGTTTAAAA
CCTTCTTTAAATTAAGACAATTCTTTACCTTTTTTCATCGATCAAAACTC
AATCCCATTTTTCAGGTTTGGAATATTTTGAAAGATTACAAAGATCCGAA
TTTCCATAACGGACGACCTGTTATTCCGGGACAACATTATACGAATTCGA
ATTCACATTCGATGAAATCGGGATCTCAAAGTCAATCCGATGCAAATAAA
GAAATGGAATCGGGAAAGTCGGAATACTCGAGTGAAAAGTGAGGATAAAG
TGAAGGGATGCAGAGGTGAAGTAAAAAATTCGGGGAAAATCGGATTTGAT
GAAACCACTGTAAGAAATGAAGTCGAAAAAGTGTTATTAtcaaataatga
tgaaaatagaTTGAAATCATCAACAAAAGTTGACGAATTAATAAAGAAGA
GTAAAAAGAATCGAATAAAAAAAACGACGTGTATATCAAGCATTTTAGGA
AATATGGGCTTATTTTAGTACTTTGTCGGGGATAAATAATCGG

Coding sequence (CDS) from alignment at sc0000069:322600..334892+

>TCONS_00006587 ID=TCONS_00006587|Name=TCONS_00006587|organism=Clytia hemisphaerica|type=CDS|length=2376bp|location=Sequence derived from alignment at sc0000069:322600..334892+ (Clytia hemisphaerica)
atgaacCTCCCAAAGTTGTCAACCACAATAGTTGCTTGGCTGGCAATTAT
GGTATGCTGTGCCAACTcggaaaatatttggattaaggTAATCACAACAA
GGAGCGAGTTCTATGAGCCAGGCTTGGAAATCGCAAGGAAACATATCATG
AAAACAAATCTGCTTGGAAAACACAAACTTCAATTCAATTATGTTAGGCC
TGGCACAACGTTGATcttgtttttgaaacaattagcAGCGTTTAATATGA
AACATTTCCTTACCATTGGTCCAGCTTCGTCACGTGATATCACTCTGATA
AGCCCATTGGTTACTGAGAACTCAATGATCcagtACAATCTGAATGGATT
GGTGAACGATTTTGAGGACGTGAACATGTACCcttatttattcaattttt
gtgTGCTTTTCTCTGGATATGAGCGAGCTCTGACCACCTTTCTTCACCAC
CATAACTGGACACGAGTCGCTTTCATTTATATATCGGACACAACTAAATT
CTCGGACACCTATTATAGGTCGGCGACAAGTACAGAAGTACACGTTCGGG
AACGCGGAATAAACGTAGAGCGTTTAGAAAAGTTCTCAATGTTTGATGAC
AGCACGAGAGCGAATGTCCCTCAATGGAACCGAATCCTAAAAAGCACGAG
GGATGATAATGATCTTCGAATTTATGTTTATTTCTTCAATGTCTTGGCCA
TGCGATACACGCTCTGCGAGTTGTACAAGCTTGGAATGTATGGTCCAAAA
TATGTTCATATCGTGTTCCATTCCAAGtggtttgtatattataaagGATT
CGCGCGCGGCCGAACGAATTGTACGGTAGAACAAGAGAATATCGTGTTGA
AGAATTTCGTTTTCATGAATCGAGCATCGAAAAGAGACGATGATATCTTG
ACTGTTGCTAATTTGACAGTTGGCCAAATTAATTCAGAAGTTAAAGCAAG
TTTCAACAAGAAGTTTCCAAAACATATCTACCCCAACGAAAAACTGGATT
CCGAAAGTCTTTATTATTATGACGCATTGTGGAGTTTCGCGAAATCTATC
AACCATATTTCGAAAAAGCATCCACGATTCGTAGATAACTTTGATAACTG
GGAGAAAAATACTACTCGTTTGAGCATTATGACGGATGCGATGTCAAATC
TTGATTTCGAGGGAGTAACTGCAAAGATCAAATTCCACCAAAAAGGCAAT
ATCCGTCGTTTGAACAGTAACATCGACTTCAAGAAATATGACGGAAATTC
ATCCACCACAAAGACGGGAAAAGTCAACACGACATTAATGGACGTCATCG
GTGATGACGGAAATTATGTTGACCGTTTTCGTACTGAATGGGAATTCCCC
ATCCCGTTAGATGCACCGAAGATCGTAGAATCAACCAAGGAATACGGCGA
AACTGTTCTCATCATTATATGGCTTTTTGCCGGTGCCGGCATTTTGCTAT
GTCTCATCTTTCTGACGATTAACATTTATTACAGACAAGTCGATTTCATT
AAGCTGTCATCACCAAACATTAACAATTTGATCTGTGTTGGTGGAATCGT
CACTTATATCTCAATCTTCCTCGGAGGTCTGGACACTACAATAGTCGATG
TTGAGAAAGTTCCATTGTTCTGTAATATTAGTATCGTGGTACTGTCAGTC
GGCTTTACATTAACGTTTGGATCATTGTTCAGCAAGACGTGGAGAATCTA
TCGTATTTTCACCAAGAAGAATTCCATTAGATCGGTGGTAATTCGAGACA
CACATTTGTTTGGTGTTGTCATGGTGCTATTGCTAATCGATTTCGcgatg
tttgtttgttttttggcCATTGCTCCATACCACCTTCAAGCACAAGTTAT
TGATGAAAAGCTAATTCCATCGGAAGATATCATCCTGAAAACAATAATCA
ATCGATGTACGAGCGACCATCAAAATTGGTTCTTAGGAGCCATGTTTTTT
TACAAAGGTCTTCTCATGTTGTTTGGACTCTTCTTAGCGTACGAAACGAA
AAATATTAAGGTGGAATCGATCAATGACTCGAAATATATCGGTTTTGCAG
TGTACAACGTTTCACTCTTCGCCACTCTTGGTTCAATCGTGTTCACGTCT
CTTTACAATACCGAGCATTACCGTGCATCTTATATCGTATTTTGTGTGTG
TATTATCCAATCGACTACAGTGACATTGTGCCTCATCTTTGGTCCGAAGG
TTTGGAATATTTTGAAAGATTACAAAGATCCGAATTTCCATAACGGACGA
CCTGTTATTCCGGGACAACATTATACGAATTCGAATTCACATTCGATGAA
ATCGGGATCTCAAAGTCAATCCGATGCAAATAAAGAAATGGAATCGGGAA
AGTCGGAATACTCGAGTGAAAAGTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003725	XLOC_003725	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00006587-protein	TCONS_00006587-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000069	supercontig	sc0000069:322600..334892 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	4.57285e-08	0	0	0	0	0	0.19288	0.0681554	0.130441	0.190548	0	0	0	0	0	0	0	0	0	0	0	8.21269e-08	0	0	0	0	3.38921e-09	0

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR002456	GPCR_3_GABA_rcpt_B1
IPR000337	GPCR_3
IPR017978	GPCR_3_C
IPR001828	ANF_lig-bd_rcpt
IPR028082	Peripla_BP_I

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004965	G-protein coupled GABA receptor activity
GO:0004930	G-protein coupled receptor activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004965	G-protein coupled GABA receptor activity
molecular_function	GO:0004930	G-protein coupled receptor activity

Blast

[Close]

BLAST of TCONS_00006587 vs. Swiss-Prot (Human)
Match: GABR2 (Gamma-aminobutyric acid type B receptor subunit 2 OS=Homo sapiens GN=GABBR2 PE=1 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 5.391e-69
Identity = 198/714 (27.73%), Postives = 329/714 (46.08%), Query Frame = 3

Query:  180 PGLEIARKHIMKTNLLGKHKLQFNYVRPGTTLILFLKQLAAF------NMKHFLTIGPASSRDITLISPLVTENSMIQYNLNGLVNDFEDVNMYPYLFNFCVLFSGYERALTTFLHHHNWTRVAFIYISDTTKFSDTYYRSATSTEVHVRERGINVERLEKFSMFDDSTRANVPQWN-RILKSTRDDNDLRIYVYFFNVLAMRYTLCELYKLGMYGPKYVHIV---FHSKWFVYYKGFARGRTNCTVEQENIVLKNFVFMNRASKRDDDILTVANLTVGQINSEVKASFNKKFPKHIYPNEKLDSESLYYYDALWSFAKSIN------HISKKHPRFVDNFDNWEKNTTRLSIMTDAMSNLDFEGVTAKIKFHQKGNIRRLNSNIDFKKYDGNSSTTKTGKVNTTL--MDVIGDDGNYVDRFRTEWEFPIPLDAPKIVESTKEYGETVLIIIWLFAGAGILLCLIFLTINIYYRQVDFIKLSSPNINNLICVGGIVTYISIFLGGLDTTIVDVEKVPLFCNISIVVLSVGFTLTFGSLFSKTWRIYRIFTKKNSIRSVVIRDTHLFGVVMVLLLIDFAMFVCFLAIAPYHLQAQVIDEKLIPS-EDIILKTIINRCTSDHQNWFLGAMFFYKGLLMLFGLFLAYETKNIKVESINDSKYIGFAVYNVSLFATLGSIVFTSLYNTEHYRASYIVFCVCIIQSTTVTLCLIFGPKV 2264
            P +E+A + I   +LL  +   F  +R   T     K L AF         H +  G       ++I+  +   +++Q +         D   YPY F      +    A+   L H+ W RV  +   D  +FS+            VR     V   E   + D  + +N P  + + LK     ND+RI +  F+        C  Y+  MYG KY  I+   +   W+      A   + C  +     ++ ++ ++        I T++  T  Q   E     +   P   +          Y YD +W  AK++       H S +H R  D F+  +    R  I+ +AM+  +F GVT ++ F    N  R+ + I F ++  +S   K G+ N     +++I D        R +   P P D   I+E  ++    +  I+      G+++   FL  NI  R    IK+SSP +NNLI +GG+++Y SIFL GLD + V  +     C +   +L+VG+T  FG++F+KTWR++ IF K   ++  +I+D  L  +V  +LLID  + +C+ A+ P     +    +  P+  DI ++ ++  C + H   +LG ++ YKGLLMLFG FLA+ET+N+ + ++NDSKYIG +VYNV +   +G+ V  S    +     + +  + II  +T+TLCL+F PK+
Sbjct:   79 PAVELAIEQIRNESLLRPY---FLDLRLYDTECDNAKGLKAFYDAIKYGPNHLMVFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTL-TQDVQRFSE------------VRNDLTGVLYGEDIEISDTESFSNDPCTSVKKLKG----NDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGWYEPSWWEQVHTEANS-SRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRSGVGPSKFHG---------YAYDGIWVIAKTLQRAMETLHASSRHQRIQD-FNYTDHTLGR--IILNAMNETNFFGVTGQVVFR---NGERMGT-IKFTQFQ-DSREVKVGEYNAVADTLEIINDT------IRFQGSEP-PKDKTIILEQLRKISLPLYSILSALTILGMIMASAFLFFNIKNRNQKLIKMSSPYMNNLIILGGMLSYASIFLFGLDGSFVSEKTFETLCTVRTWILTVGYTTAFGAMFAKTWRVHAIF-KNVKMKKKIIKDQKLLVIVGGMLLIDLCILICWQAVDPLRRTVEKYSMEPDPAGRDISIRPLLEHCENTHMTIWLGIVYAYKGLLMLFGCFLAWETRNVSIPALNDSKYIGMSVYNVGIMCIIGAAV--SFLTRDQPNVQFCIVALVIIFCSTITLCLVFVPKL 744

The following BLAST results are available for this feature:

BLAST of TCONS_00006587 vs. Swiss-Prot (Human)

BLAST of TCONS_00006587 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GABR2	5.391e-69	27.73	Gamma-aminobutyric acid type B receptor subunit 2 ...	[more]

You are here

TCONS_00006587 (transcript) - C. hemisphaerica