TCONS_00006607 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00006607
Unique Name	TCONS_00006607
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3492

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000069:19758..25957-
coding sequence from alignment at sc0000069:19758..25957-

transcript sequence

>TCONS_00006607 ID=TCONS_00006607|Name=TCONS_00006607|organism=Clytia hemisphaerica|type=transcript|length=3492bp
CTGCACACGTCCATCACGTGATCAAGTCGCAACCAATCAAAGCAAAACAC
GATAATTCAAActttaaaacctttaaaattcaGAGAATCGGCAAAAGTCA
ATTTGTAGTCGTGTTGTGTAGTGGAAACGTGGAACTGAGTTGGACAAAGT
GTCATACACAGTCATCCACAATGGCATCAAGAAAATTCTGGATGTTTGGT
CTCTTGGCCGTCCTTTTTTTGTCATgttcAGTCAAAGCTGAAGAAAGTGA
TGACGCTGAAATCGAGACTCCCAAAGTTGATGAAGATGTAGGCAAGAGTC
GTGATGGttcaaaaactgatgatgaAGTTGTTCAAAGGGAGGAAGAAGCT
ATCAACATTGATGGCCTCAGTGTTGcagaaatgaaacaaatgagAGAATC
TTCTGAAAAACATGCTTTCCAAGCTGAAGTTAGCCGTATGATGAAACTGA
TCATCAATTCcctttacaaaaacaaagagATCTTCTTGAGAGAATTGATT
TCCAACTCCTCAGATGCTTTGGACAAAATTAGATTCTTGTCTCTTACCGA
CACAGATGCATTGGCTGCTACAGATGAACTCTCCATCAAAGTCAAAGCTG
ATAAGGACAACCATGTTCTACATATCACTGATACAGGTATTGGTATGACC
AAAGATGACCTTATCAAACAACTTGGTACCATTGCTAAATCAGGAACCAG
TGAATTCTTCTCCAAGTTGCAAGAAGCAGGAACAACTGATCAAGCcagtg
atttgattggtcaattTGGTGTTGGTTTCTACTCTGCTTTCTTGGTTGCC
GATAAAGTCATCGTCACATCAAAGAACAATGCTGACAAACAACACATCTG
GGAATCTGACTCTGCTGAATTTTCTGTTGTTGAGGATCCACGTGGAGATA
CCTTGAAACGTGGAACCCAAGTCAGTTTGTACTTGAAAGAGGAAGCTCGT
GATTTCTTAGAGCCAGACACTTTGGAGAATTTGATCAAGAAATACTCTCA
ATTTATCAACTTTAACATCTTCTTGTGGAAATCAAAGACTGAAGAAGTCG
AGGAACCCATTGAAGAAGCTGCTGAAGAAAAGAAGGAAGAAGAAACTCCA
GAAGAGAAGAAAGATGAGGATGATGAAGCCAaggttgaagaagaaaaaga
agaagaaaaaccaaaaaccaaGAAAGTCTCCAAGACAACATGGGATTGGG
AAATAATGAACTCATCCAAACCAATCTGGaccaaaaaaccaaaagaagTT
ACTGATGATGAATATAACGAGTTCTACAAAGCCATGACCAAGGAATCTGA
TACTCCAATGGCCAAGACTCACTTTGTTGCTGAAGGAGAAGTTACCTTCA
AATCCATCTTGTACGTTCCAACCACCTCTCCACATGATATGTTTCAAGAC
TATGGAAAACGCAGAgaacaaattaaattgtttGTTAGGCGTGTTTTTAT
CACAGATGATTTCCAAGACATGATGCCTAAATATTTATCTTTCATCCGTG
GTATTGTTGATTCCGATGATTTACCTTTGAATGTATCTCGTGAGCAACTT
CAACAACATAAATTATTGAAGGTCATTAAGAAGAAATTGGTCCGAAAAGC
TCTTGACATGATCAAGAAGATCCCAGATGCAGACTACCTCGATAAATTCT
GGAAAGAATTCAGTACCAATATCAAACTTGGAATCATGGAAGATCAAGCT
AACCGAACCAGACTTTCAAAATTGTTGCGTTTCAAATCATCAAATGATGC
TGAAAAACAAACTTCATTAGCTGACTATGTTGCAAGAATGAAGGACAAGC
AAGAACATATTTATTTCATTGCTGGATCAAGCCTTGATGAAGTCAAGAGC
TCCCCATTCGTTGAACGTCTTTTGAAAAGAGGATACGAAGTCTTGTACTT
GACTGAGCCAGTCGATGAATACACCATGCAAAGTTTACCCGATTTTGAAG
GAAAGAAATTCCAAAACGTTGCCAAAGACGGTCTCAAAATGGGAGATGAC
ACAAAAGAAAAGGCTAAGGTTGAAGAATTAGAAAAAGAATACGAACCACT
CTTGAAATGGTTGAAAGAAGACAGTTTGAAAGACTTGATTGAAAAAGCTA
CCGTCTCTCAACGTTTGACTGAATCACCATGTGCCTTGGTTGCCAGCTCT
TATGGATGGTCTGGTAACATGGAACGTATCATGAATTCACAAGCTTACGC
TAAAGCTAAAGACCCAACTCAAAACTTCTATGCTACCCAAAAGAAGACTT
TGGAGGTTAACGTATACCATCCATTGATCAAAGAATTGCACAAGCGTGTT
GGTGACAACAAAGAGGATCAAACTGCCAAAGATCTCGCCCGCGTCATGTT
CGAGACAGCCACTATGAGATCAGGATACGTCATCAAGGATAGTGCAGATT
TTGCTGGTCGTATTGAACGCATGTTGAGACTTTCAATGGGTGTTGATTTG
GATGCTAAAGTTGATTTACCAGAAGAGGAAGAATCTGCAGAAGAAGAAGC
TACTGAAGAGGTCAATGCTGACAACGAAGAAGAAGATACTCCAGTCGATA
TTCCTGAAGACGCAAAGACAGCTGATCCAGTTGATGCTAAAGAAGATAGT
GCCGAAGGTGAACAAGAAGCACCAGCCGAAGCTAAAGATGAACTATAAAG
TGTTGCTTTGCTGCCTTAggccttttttcaaagagagtATGAACTTAATA
TAGTTGGGTTGTTACCAACTTGTAACTCGCGATCTTAGTACCACGCAAAT
CAGTTCAAGAAGAACCTGTTGAAGTTATCCTATCAAATGCACAATATTTG
GTAAATTCGTTAATGGCTTCTATCTTTGCTCGGGAGTTACATGATAACAT
TTATCGTTAGTTTAGTAGAAGAAATTTGGAAACTTTGCACCGGCTTTTTG
GACTGATTTGCTATTTATAACAAAATATAGAAacctttttttacaatttt
aatatTATATTACCAAAGccaatttccaaaaaaagcaaacaatttGTACA
AAGtattatttacaatttttaaaacCATTACAAGGGGgaatattattttg
aaaatcagtcaaaatctATTTTCCGCtataattcttttgaaatttcacgT
TCCGTTTTTCCTtgcattttcatattttcccACATCAAGTTAGTTgttaa
tttatttcaattttattgttGTCTTTCGTTTATGTGGTAAATTCATTATA
ATGGACGTGCtattaacagaaaaaaatattgtacAGAATATTACATTTAG
GATAATGAAGTGagaaattgggaaaaaaaaacttaaatttcaaaaaatct
aaatcGTTATTTATCTTTGGTTCGTACCAAAACGGAATTCTCATCGATAG
TTTGGGGgaatttgtttgattttttgaggtcgctcgacttttttagtcaa
agcatttgttatacatttttggaaagttaagggataggggaatcaaaatg
acaggtgccaattttttttctcggtcAAATATGACGGTCTGG

Run BLAST on NCBI

protein sequence of TCONS_00006607-protein

>TCONS_00006607-protein ID=TCONS_00006607-protein|Name=TCONS_00006607-protein|organism=Clytia hemisphaerica|type=polypeptide|length=881bp
AHVHHVIKSQPIKAKHDNSNFKTFKIQRIGKSQFVVVLCSGNVELSWTKC
HTQSSTMASRKFWMFGLLAVLFLSCSVKAEESDDAEIETPKVDEDVGKSR
DGSKTDDEVVQREEEAINIDGLSVAEMKQMRESSEKHAFQAEVSRMMKLI
INSLYKNKEIFLRELISNSSDALDKIRFLSLTDTDALAATDELSIKVKAD
KDNHVLHITDTGIGMTKDDLIKQLGTIAKSGTSEFFSKLQEAGTTDQASD
LIGQFGVGFYSAFLVADKVIVTSKNNADKQHIWESDSAEFSVVEDPRGDT
LKRGTQVSLYLKEEARDFLEPDTLENLIKKYSQFINFNIFLWKSKTEEVE
EPIEEAAEEKKEEETPEEKKDEDDEAKVEEEKEEEKPKTKKVSKTTWDWE
IMNSSKPIWTKKPKEVTDDEYNEFYKAMTKESDTPMAKTHFVAEGEVTFK
SILYVPTTSPHDMFQDYGKRREQIKLFVRRVFITDDFQDMMPKYLSFIRG
IVDSDDLPLNVSREQLQQHKLLKVIKKKLVRKALDMIKKIPDADYLDKFW
KEFSTNIKLGIMEDQANRTRLSKLLRFKSSNDAEKQTSLADYVARMKDKQ
EHIYFIAGSSLDEVKSSPFVERLLKRGYEVLYLTEPVDEYTMQSLPDFEG
KKFQNVAKDGLKMGDDTKEKAKVEELEKEYEPLLKWLKEDSLKDLIEKAT
VSQRLTESPCALVASSYGWSGNMERIMNSQAYAKAKDPTQNFYATQKKTL
EVNVYHPLIKELHKRVGDNKEDQTAKDLARVMFETATMRSGYVIKDSADF
AGRIERMLRLSMGVDLDAKVDLPEEEESAEEEATEEVNADNEEEDTPVDI
PEDAKTADPVDAKEDSAEGEQEAPAEAKDEL

Run BLAST on NCBI

transcript from alignment at sc0000069:19758..25957-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00006607 ID=TCONS_00006607|Name=TCONS_00006607|organism=Clytia hemisphaerica|type=transcript|length=6200bp|location=Sequence derived from alignment at sc0000069:19758..25957- (Clytia hemisphaerica)
CTGCACACGTCCATCACGTGATCAAGTCGCAACCAATCAAAGCAAAACAC
GATAATTCAAACTTTAAAACCTTTAAAATTCAGAGAATCGGCAAAAGTCA
ATTTGTAGTCGTGTTGTGTAGTGGAAACGTGGAACTGAGTTGGACAAAGT
GTCATACACAGTCATCCACAATGGCATCAAGAAAATTCTGGATGTTTGGT
CTCTTGGCCGTCCTTTTTTTGTCATGTTAGTATTTCATTTTATTTTTTGC
CTTTCTTACGACTGTCTCCTTCTCTTAGGCGCTATTTTCAAGGGAAAATG
TTTCCTAGAGTTTTTTACAAAGATACATTCACATTGAATTTCTATCGTGT
TAAATGTTCACAATAATTTTCACAACAGTTTAAAACTATTATCGAAAATA
TTTACAACATGTTATAGGTACCTAGTCATTCATGTCTTTCACATATTAGT
TTCAATATTGCTTGTTAGGCCCTTTATTGGGGAAACTGTAGGAAAGTCAA
TTTCTCTGGGGTTTTTAGTTTATATCCAAGAATGGGTAAGGTCTATATAA
CTGGAGTTTCTAGCTGTAAAGCTGGAAGTGAAATTCACCAATACATATGG
TAATGCTTTCTATATTTATCATAGAATAGTCTTTCAGTGTAGGTATGAAT
AATTGGATTTTATTTTTCAGGTTCAGTCAAAGCTGAAGAAAGTGATGACG
CTGAAATCGAGACTCCCAAAGTTGATGAAGATGTAGGCAAGAGTCGTGAT
GGTTCAAAAACTGATGATGAAGTTGTTCAAAGGGAGGAAGAAGCTATCAA
CATTGATGGCCTCAGTGTTGCAGAAATGAAACAAATGAGAGAATCTTCTG
AAAAACATGCTTTCCAAGCTGAAGTTAGCCGTATGATGAAACTGATCATC
AATTCCCTTTACAAAAACAAAGAGGTAATTTTATTTATGTTGGTGAAAAA
GTGCTCAAATTTCTATGAGAAATCACGAAAATATAGTACTTGTATTATTC
TGGAAAATGCATCTCAACATTCAACACATGTTTCATTTCCTTTTTTTGAA
TCAAATAAATTGCAGGTCATTAACTTAATTGCTTATAGATATTTCCTCTT
TTCTCCTGCTTCCAGTTTTGTACTTATTAATTACATTTCAAAAAAATTGC
AACTAGCAGCTGTTAAAACAACTTATACAAGTCTAGATAAATATTGAAAA
TATCAATATCAAGATATATCAAACTAAATCTAGACAGAAGAGATTTCTTT
CTATATGTTGTCATAATAGCAAAATATTTTTGGTGCTTTCTGTTTTTAAT
TTCTTTGAATTATTCTAAAGAGCTTCATTGCTTTCATTCATTTCATGTTT
GTTTTGAAAGCCAGAGGGCTTAAATGAAAAAGGAGTTTAGCACCAGAGAA
CAACACTTTATTTTGCTACATAGAAGATAAAAGAGTATTGTTAAACATAG
ACATTTAATGATCTTTTCTTTATAGATCTTCTTGAGAGAATTGATTTCCA
ACTCCTCAGATGCTTTGGACAAAATTAGATTCTTGTCTCTTACCGACACA
GATGCATTGGCTGCTACAGATGAACTCTCCATCAAAGTCAAAGCTGATAA
GGACAACCATGTTCTACATATCACTGATACAGGTATTGGTATGACCAAAG
ATGACCTTATCAAACAACTTGGTACCATTGCTAAATCAGGAACCAGTGAA
TTCTTCTCCAAGTTGCAAGAAGCAGGTAAGAATTTTTTCTATTTTTCATG
GTTCTTTTGTCATTTTTTTTATTGTGGCCGCATTATTTCATTCAAATAAA
ATCAAACTTGAAACTAAGATATGTGTCAATTATTATTTTATTTTGAATGC
TTGATTTTGTGTTTGAATGTAGAACATTTTCAGTACCACAATTGCTATGT
TGGATTTTGCTGTTCATTTTCATTACTATATATTTCACTTTCAGGAACAA
CTGATCAAGCCAGTGATTTGATTGGTCAATTTGGTGTTGGTTTCTACTCT
GCTTTCTTGGTTGCCGATAAAGTCATCGTCACATCAAAGAACAATGCTGA
CAAACAACACATCTGGGAATCTGACTCTGCTGAATTTTCTGTTGTTGAGG
ATCCACGTGGAGATACCTTGAAACGTGGAACCCAAGTCAGTTTGTACTTG
AAAGAGGAAGCTCGTGATTTCTTAGAGCCAGACACTTTGGAGAATTTGAT
CAAGAAATACTCTCAATTTATCAACTTTAACATCTTCTTGTGGAAATCAA
AGACTGAAGAAGTCGAGGAACCCATTGAAGAAGCTGCTGAAGAAAAGAAG
GAAGAAGAAACTCCAGAAGAGGTAAAGAGATCAGAATTCAAATCCCTATT
TTGGTAATTTTTACACTTTTGGCTAACTCATTTCTAAAGTCCCAAAATTT
AAGTTCAGCTTTCATCCATTACAATAAAAAGAGTATAGGTTAAAAATCAT
CCTTAATATTACACAATATATCCACTAACTTGTATACTTTTTCAGTGCTT
CCTGAATAAGCTATTTTTCAAAATAGCTTTAAAAAAGTAGCACAAAGCTC
CAAATATCTTTCAGAGAGCGTTTGTTTTAAATTTTGAATTTTTGGCTTAA
CGCATTTCATTATTTTATGATTTAGAAGAAAGATGAGGATGATGAAGCCA
AGGTTGAAGAAGAAAAAGAAGAAGAAAAACCAAAAACCAAGAAAGTCTCC
AAGACAACATGGGATTGGGAAATAATGAACTCATCCAAACCAATCTGGAC
CAAAAAACCAAAAGAAGTTACTGATGATGAATATAACGAGTTCTACAAAG
CCATGACCAAGGTAATTTTCTAATCACAGTCTGTAGAATTCAAGTAATTT
AATCACCTGATACCTTTCCCACATACTCATTTTATTGTAAAAAGTAAAAT
TGTTAAAACCTGTCAGATTTTTCATACATCTTGGGTTATTTTGACCTTTT
AAAATTTAATATTACTTAACATTTTTCCTTAGGAATCTGATACTCCAATG
GCCAAGACTCACTTTGTTGCTGAAGGAGAAGTTACCTTCAAATCCATCTT
GTACGTTCCAACCACCTCTCCACATGATATGTTTCAAGACTATGGAAAAC
GCAGAGAACAAATTAAATTGTTTGTTAGGCGTGTTTTTATCACAGATGAT
TTCCAAGACATGATGCCTAAATATTTATCTTTCATCCGTGGTATTGTTGA
TTCCGATGATTTACCTTTGAATGTATCTCGTGAGCAACTTCAACAACATA
AATTATTGAAGGTCATTAAGAAGAAATTGGTCCGAAAAGCTCTTGACATG
ATCAAGAAGATCCCAGATGCAGACTACCTCGATAAATTCTGGAAAGAATT
CAGTACCAAGTAAGTTCCCTCTGGAATACAACATGAGATCTTTTTATCCT
CAAAACCTGCTTGCGGTATATAATCTTGATTTCTCTCTTGCTATGTGAGG
AGTTTTTTGAAGTGTCTCATTTGGTTCTAAGTAAGTAACAGCAGCAATGT
TTGAAATAACTGAAAGGTATGTTTATGAACCTTTATTCAAGTCAAATTAT
CTTTTTTTCCTATACATCATAAAATTTGTTTCTTTAGTATCAAACTTGGA
ATCATGGAAGATCAAGCTAACCGAACCAGACTTTCAAAATTGTTGCGTTT
CAAATCATCAAATGATGCTGAAAAACAAACTTCATTAGCTGACTATGTTG
CAAGAATGAAGGACAAGCAAGAACATATTTATTTCATTGCTGGATCAAGC
CTTGATGAAGTCAAGAGCTCCCCATTCGTTGAACGTCTTTTGAAAAGAGG
TGTGTAAGACTAAATTTAGAGCATTTATTTGTGTATTAAAATCAAAACCA
AGTTCGATCTGCAACCTTCGTTGGCAAATTTATGGGGTATGAGAACTAGA
TTAACTTTTGACTATAAGTATTTATTCTGACTGATGTTCGTTTTTTTCTT
AGGATACGAAGTCTTGTACTTGACTGAGCCAGTCGATGAATACACCATGC
AAAGTTTACCCGATTTTGAAGGAAAGAAATTCCAAAACGTTGCCAAAGAC
GGTCTCAAAATGGGAGATGACACAAAAGAAAAGGCTAAGGTTGAAGAATT
AGAAAAAGAATACGAACCACTCTTGAAATGGTTGAAAGAAGACAGTTTGA
AAGACTTGATTGAAAAAGCTACCGTCTCTCAACGTTTGACTGAATCACCA
TGTGCCTTGGTTGCCAGCTCTTATGGATGGTCTGGTAACATGGAACGTAT
CATGAATTCACAAGCTTACGCTAAAGCTAAAGACCCAACTCAAAAGTAAG
TTCATTGAACGATAAGAATTTATAACCACCTCTGTTTTGTTCTGACAAAA
TTGTTCTGTAAAATCTATTTTCGTCTGAAATGAAAATTCTTTTTTGCTTA
CTAAAGGAATATCTTTCTTGGCTATCCCTGTAGTATAATCTTGTTGCGAA
TAAAAGTTGAAACTTAGTGGGCATAAATTTACAAAAATAATATACTTCAA
GTTTGGAAGTACAGTTTCTCTATATAGCTATTTTAAACTATTTTTTTCAG
CTTCTATGCTACCCAAAAGAAGACTTTGGAGGTTAACGTATACCATCCAT
TGATCAAAGAATTGCACAAGCGTGTTGGTGACAACAAAGAGGATCAAACT
GCCAAAGATCTCGCCCGCGTCATGTTCGAGACAGCCACTATGAGATCAGG
ATACGTCATCAAGGATAGTGCAGATTTTGCTGGTCGTATTGAACGCATGT
TGAGACTTTCAATGGGTGTTGATTTGGATGCTAAAGTTGATTTACCAGAA
GAGGAAGAATCTGCAGAAGAAGAAGCTACTGAAGAGGTTGGTTACTAATT
CGATTTCCACGGAGTATACAATTTTCATCGAATAGTAGAGCGTCGTTTTT
GAGAGCTTCTTGTTGACGGTGACTTTTAATTTTATCGAATAATGGAGCAT
ATCGAATAGTAGAACGTCGAATTAGAGAGCGTCAACTGTACTTTTCAATA
TCGTATCATTCGACGTTATTCAAATTTCACCGAAGTTAGTTCTCGACAAT
ATTAGTTCGTTCCCTCTACTAAGGTTAATCCTGGTTAATCGTGTAATTCA
TTTGGGACGAGACAGGAATTCTAGAATTCTGTGCTTGTGGCCTATTACCT
GTTTTCTCGGGTTTTTTCGTTTTAAGAAGTGTCCGAGGTTTCAAAACAAT
TTTTACTTATTTCTCCAGGTCAATGCTGACAACGAAGAAGAAGATACTCC
AGTCGATATTCCTGAAGACGCAAAGACAGCTGATCCAGTTGATGCTAAAG
AAGATAGTGCCGAAGGTGAACAAGAAGCACCAGCCGAAGCTAAAGATGAA
CTATAAAGTGTTGCTTTGCTGCCTTAGGCCTTTTTTCAAAGAGAGTATGA
ACTTAATATAGTTGGGTTGTTACCAACTTGTAACTCGCGATCTTAGTACC
ACGCAAATCAGTTCAAGAAGAACCTGTTGAAGTTATCCTATCAAATGCAC
AATATTTGGTAAATTCGTTAATGGCTTCTATCTTTGCTCGGGAGTTACAT
GATAACATTTATCGTTAGTTTAGTAGAAGAAATTTGGAAACTTTGCACCG
GCTTTTTGGACTGATTTGCTATTTATAACAAAATATAGAAACCTTTTTTT
ACAATTTTAATATTATATTACCAAAGCCAATTTCCAAAAAAAGCAAACAA
TTTGTACAAAGTATTATTTACAATTTTTAAAACCATTACAAGGGGGAATA
TTATTTTGAAAATCAGTCAAAATCTATTTTCCGCTATAATTCTTTTGAAA
TTTCACGTTCCGTTTTTCCTTGCATTTTCATATTTTCCCACATCAAGTTA
GTTGTTAATTTATTTCAATTTTATTGTTGTCTTTCGTTTATGTGGTAAAT
TCATTATAATGGACGTGCTATTAACAGAAAAAAATATTGTACAGAATATT
ACATTTAGGATAATGAAGTGAGAAATTGGGAAAAAAAAACTTAAATTTCA
AAAAATCTAAATCGTTATTTATCTTTGGTTCGTACCAAAACGGAATTCTC
ATCGATAGTTTGGGGGAATTTGTTTGATTTTTTGAGGTCGCTCGACTTTT
TTAGTCAAAGCATTTGTTATACATTTTTGGAAAGTTAAGGGATAGGGGAA
TCAAAATGACAGGTGCCAATTTTTTTTCTCGGTCAAATATGACGGTCTGG

Coding sequence (CDS) from alignment at sc0000069:19758..25957-

>TCONS_00006607 ID=TCONS_00006607|Name=TCONS_00006607|organism=Clytia hemisphaerica|type=CDS|length=2646bp|location=Sequence derived from alignment at sc0000069:19758..25957- (Clytia hemisphaerica)
GCACACGTCCATCACGTGATCAAGTCGCAACCAATCAAAGCAAAACACGA
TAATTCAAACTTTAAAACCTTTAAAATTCAGAGAATCGGCAAAAGTCAAT
TTGTAGTCGTGTTGTGTAGTGGAAACGTGGAACTGAGTTGGACAAAGTGT
CATACACAGTCATCCACAATGGCATCAAGAAAATTCTGGATGTTTGGTCT
CTTGGCCGTCCTTTTTTTGTCATGTTCAGTCAAAGCTGAAGAAAGTGATG
ACGCTGAAATCGAGACTCCCAAAGTTGATGAAGATGTAGGCAAGAGTCGT
GATGGTTCAAAAACTGATGATGAAGTTGTTCAAAGGGAGGAAGAAGCTAT
CAACATTGATGGCCTCAGTGTTGCAGAAATGAAACAAATGAGAGAATCTT
CTGAAAAACATGCTTTCCAAGCTGAAGTTAGCCGTATGATGAAACTGATC
ATCAATTCCCTTTACAAAAACAAAGAGATCTTCTTGAGAGAATTGATTTC
CAACTCCTCAGATGCTTTGGACAAAATTAGATTCTTGTCTCTTACCGACA
CAGATGCATTGGCTGCTACAGATGAACTCTCCATCAAAGTCAAAGCTGAT
AAGGACAACCATGTTCTACATATCACTGATACAGGTATTGGTATGACCAA
AGATGACCTTATCAAACAACTTGGTACCATTGCTAAATCAGGAACCAGTG
AATTCTTCTCCAAGTTGCAAGAAGCAGGAACAACTGATCAAGCCAGTGAT
TTGATTGGTCAATTTGGTGTTGGTTTCTACTCTGCTTTCTTGGTTGCCGA
TAAAGTCATCGTCACATCAAAGAACAATGCTGACAAACAACACATCTGGG
AATCTGACTCTGCTGAATTTTCTGTTGTTGAGGATCCACGTGGAGATACC
TTGAAACGTGGAACCCAAGTCAGTTTGTACTTGAAAGAGGAAGCTCGTGA
TTTCTTAGAGCCAGACACTTTGGAGAATTTGATCAAGAAATACTCTCAAT
TTATCAACTTTAACATCTTCTTGTGGAAATCAAAGACTGAAGAAGTCGAG
GAACCCATTGAAGAAGCTGCTGAAGAAAAGAAGGAAGAAGAAACTCCAGA
AGAGAAGAAAGATGAGGATGATGAAGCCAAGGTTGAAGAAGAAAAAGAAG
AAGAAAAACCAAAAACCAAGAAAGTCTCCAAGACAACATGGGATTGGGAA
ATAATGAACTCATCCAAACCAATCTGGACCAAAAAACCAAAAGAAGTTAC
TGATGATGAATATAACGAGTTCTACAAAGCCATGACCAAGGAATCTGATA
CTCCAATGGCCAAGACTCACTTTGTTGCTGAAGGAGAAGTTACCTTCAAA
TCCATCTTGTACGTTCCAACCACCTCTCCACATGATATGTTTCAAGACTA
TGGAAAACGCAGAGAACAAATTAAATTGTTTGTTAGGCGTGTTTTTATCA
CAGATGATTTCCAAGACATGATGCCTAAATATTTATCTTTCATCCGTGGT
ATTGTTGATTCCGATGATTTACCTTTGAATGTATCTCGTGAGCAACTTCA
ACAACATAAATTATTGAAGGTCATTAAGAAGAAATTGGTCCGAAAAGCTC
TTGACATGATCAAGAAGATCCCAGATGCAGACTACCTCGATAAATTCTGG
AAAGAATTCAGTACCAATATCAAACTTGGAATCATGGAAGATCAAGCTAA
CCGAACCAGACTTTCAAAATTGTTGCGTTTCAAATCATCAAATGATGCTG
AAAAACAAACTTCATTAGCTGACTATGTTGCAAGAATGAAGGACAAGCAA
GAACATATTTATTTCATTGCTGGATCAAGCCTTGATGAAGTCAAGAGCTC
CCCATTCGTTGAACGTCTTTTGAAAAGAGGATACGAAGTCTTGTACTTGA
CTGAGCCAGTCGATGAATACACCATGCAAAGTTTACCCGATTTTGAAGGA
AAGAAATTCCAAAACGTTGCCAAAGACGGTCTCAAAATGGGAGATGACAC
AAAAGAAAAGGCTAAGGTTGAAGAATTAGAAAAAGAATACGAACCACTCT
TGAAATGGTTGAAAGAAGACAGTTTGAAAGACTTGATTGAAAAAGCTACC
GTCTCTCAACGTTTGACTGAATCACCATGTGCCTTGGTTGCCAGCTCTTA
TGGATGGTCTGGTAACATGGAACGTATCATGAATTCACAAGCTTACGCTA
AAGCTAAAGACCCAACTCAAAACTTCTATGCTACCCAAAAGAAGACTTTG
GAGGTTAACGTATACCATCCATTGATCAAAGAATTGCACAAGCGTGTTGG
TGACAACAAAGAGGATCAAACTGCCAAAGATCTCGCCCGCGTCATGTTCG
AGACAGCCACTATGAGATCAGGATACGTCATCAAGGATAGTGCAGATTTT
GCTGGTCGTATTGAACGCATGTTGAGACTTTCAATGGGTGTTGATTTGGA
TGCTAAAGTTGATTTACCAGAAGAGGAAGAATCTGCAGAAGAAGAAGCTA
CTGAAGAGGTCAATGCTGACAACGAAGAAGAAGATACTCCAGTCGATATT
CCTGAAGACGCAAAGACAGCTGATCCAGTTGATGCTAAAGAAGATAGTGC
CGAAGGTGAACAAGAAGCACCAGCCGAAGCTAAAGATGAACTATAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003732	XLOC_003732	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00006607-protein	TCONS_00006607-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000069	supercontig	sc0000069:19758..25957 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
292.346	256.41	182.191	159.055	97.9026	79.0049	499.284	520.339	247.116	266.121	245.776	200.3	223.193	151.544	214.639	232.643	316.822	265.418	69.7376	200.594	115.165	126.926	246.612	257.012	184.864	242.2	206.989	135.188	224.577	168.659

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR020575	Hsp90_N
IPR003594	HATPase_C
IPR001404	Hsp90_fam
IPR019805	Heat_shock_protein_90_CS
IPR020568	Ribosomal_S5_D2-typ_fold

Vocabulary: **Biological Process**
Term	Definition
GO:0006950	response to stress
GO:0006457	protein folding

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding
GO:0051082	unfolded protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
biological_process	GO:0006950	response to stress
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0051082	unfolded protein binding

Blast

[Close]

BLAST of TCONS_00006607 vs. Swiss-Prot (Human)
Match: ENPL (Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1)

HSP 1 Score: 895.19 bits (2312), Expect = 0.000e+0
Identity = 488/763 (63.96%), Postives = 617/763 (80.87%), Query Frame = 3

Query:  180 RKFWMFGLLAVLFLSCSVKAEESDDAEIETPKVDEDVGKSRDGSKTDDEVVQREEEAINIDGLSVAEMKQMRESSEKHAFQAEVSRMMKLIINSLYKNKEIFLRELISNSSDALDKIRFLSLTDTDALAATDELSIKVKADKDNHVLHITDTGIGMTKDDLIKQLGTIAKSGTSEFFSKLQEAGTTDQA-SDLIGQFGVGFYSAFLVADKVIVTSKNNADKQHIWESDSAEFSVVEDPRGDTLKRGTQVSLYLKEEARDFLEPDTLENLIKKYSQFINFNIFLWKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKTTWDWEIMNSSKPIWTKKPKEVTDDEYNEFYKAMTKESDTPMAKTHFVAEGEVTFKSILYVPTTSPHDMFQDYG-KRREQIKLFVRRVFITDDFQDMMPKYLSFIRGIVDSDDLPLNVSREXXXXXXXXXXXXXXXXXXXXDMIKKIPDADYLDKFWKEFSTNIKLGIMEDQANRTRLSKLLRFKSSNDAEKQTSLADYVARMKDKQEHIYFIAGSSLDEVKSSPFVERLLKRGYEVLYLTEPVDEYTMQSLPDFEGKKFQNVAKDGLKMGDDTXXXXXXXXXXXXXXXXXXXXXXDSLKDLIEKATVSQRLTESPCALVASSYGWSGNMERIMNSQAYAKAKDPTQNFYATQKKTLEVNVYHPLIKELHKRVGDNKEDQTAKDLARVMFETATMRSGYVIKDSADFAGRIERMLRLSMGVDLDAKV 2462
            R  W+ GL  VL    SV+A++  D +     V+ED+GKSR+GS+TDDEVVQREEEAI +DGL+ ++++++RE SEK AFQAEV+RMMKLIINSLYKNKEIFLRELISN+SDALDKIR +SLTD +AL+  +EL++K+K DK+ ++LH+TDTG+GMT+++L+K LGTIAKSGTSEF +K+ EA    Q+ S+LIGQFGVGFYSAFLVADKVIVTSK+N D QHIWESDS EFSV+ DPRG+TL RGT ++L LKEEA D+LE DT++NL+KKYSQFINF I++W SKTE VEEP+EE    K+E+E  +++   ++E + ++ K ++        KT WDWE+MN  KPIW +  KEV +DEY  FYK+ +KESD PMA  HF AEGEVTFKSIL+VPT++P  +F +YG K+ + IKL+VRRVFITDDF DMMPKYL+F++G+VDSDDLPLNVSRE LQQHKLLKVI+KKLVRK LDMIKKI D  Y D FWKEF TNIKLG++ED +NRTRL+KLLRF+SS+     TSL  YV RMK+KQ+ IYF+AGSS  E +SSPFVERLLK+GYEV+YLTEPVDEY +Q+LP+F+GK+FQNVAK+G+K  +  K K   E +EKE+EPLL W+K+ +LKD IEKA VSQRLTESPCALVAS YGWSGNMERIM +QAY   KD + N+YA+QKKT E+N  HPLI+++ +R+ ++++D+T  DLA V+FETAT+RSGY++ D+  +  RIERMLRLS+ +D DAKV
Sbjct:    2 RALWVLGLCCVLLTFGSVRADDEVDVD---GTVEEDLGKSREGSRTDDEVVQREEEAIQLDGLNASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALSGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMEEEEAAKEEKEESDDEAAVEEEEEEKKPKTKKV------EKTVWDWELMNDIKPIWQRPSKEVEEDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITDDFHDMMPKYLNFVKGVVDSDDLPLNVSRETLQQHKLLKVIRKKLVRKTLDMIKKIADDKYNDTFWKEFGTNIKLGVIEDHSNRTRLAKLLRFQSSHHPTDITSLDQYVERMKEKQDKIYFMAGSSRKEAESSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKRFQNVAKEGVKFDESEKTKESREAVEKEFEPLLNWMKDKALKDKIEKAVVSQRLTESPCALVASQYGWSGNMERIMKAQAYQTGKDISTNYYASQKKTFEINPRHPLIRDMLRRIKEDEDDKTVLDLAVVLFETATLRSGYLLPDTKAYGDRIERMLRLSLNIDPDAKV 755

The following BLAST results are available for this feature:

BLAST of TCONS_00006607 vs. Swiss-Prot (Human)

BLAST of TCONS_00006607 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ENPL	0.000e+0	63.96	Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1	[more]

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TCONS_00006607 (transcript) - C. hemisphaerica