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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006607 ID=TCONS_00006607|Name=TCONS_00006607|organism=Clytia hemisphaerica|type=transcript|length=3492bpRun BLAST on NCBI protein sequence of TCONS_00006607-protein >TCONS_00006607-protein ID=TCONS_00006607-protein|Name=TCONS_00006607-protein|organism=Clytia hemisphaerica|type=polypeptide|length=881bp AHVHHVIKSQPIKAKHDNSNFKTFKIQRIGKSQFVVVLCSGNVELSWTKCRun BLAST on NCBI transcript from alignment at sc0000069:19758..25957- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006607 ID=TCONS_00006607|Name=TCONS_00006607|organism=Clytia hemisphaerica|type=transcript|length=6200bp|location=Sequence derived from alignment at sc0000069:19758..25957- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000069:19758..25957- >TCONS_00006607 ID=TCONS_00006607|Name=TCONS_00006607|organism=Clytia hemisphaerica|type=CDS|length=26460bp|location=Sequence derived from alignment at sc0000069:19758..25957- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00006607 vs. Swiss-Prot (Human)
Match: ENPL (Endoplasmin OS=Homo sapiens GN=HSP90B1 PE=1 SV=1) HSP 1 Score: 895.19 bits (2312), Expect = 0.000e+0 Identity = 488/763 (63.96%), Postives = 617/763 (80.87%), Query Frame = 3
Query: 180 RKFWMFGLLAVLFLSCSVKAEESDDAEIETPKVDEDVGKSRDGSKTDDEVVQREEEAINIDGLSVAEMKQMRESSEKHAFQAEVSRMMKLIINSLYKNKEIFLRELISNSSDALDKIRFLSLTDTDALAATDELSIKVKADKDNHVLHITDTGIGMTKDDLIKQLGTIAKSGTSEFFSKLQEAGTTDQA-SDLIGQFGVGFYSAFLVADKVIVTSKNNADKQHIWESDSAEFSVVEDPRGDTLKRGTQVSLYLKEEARDFLEPDTLENLIKKYSQFINFNIFLWKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKTTWDWEIMNSSKPIWTKKPKEVTDDEYNEFYKAMTKESDTPMAKTHFVAEGEVTFKSILYVPTTSPHDMFQDYG-KRREQIKLFVRRVFITDDFQDMMPKYLSFIRGIVDSDDLPLNVSREXXXXXXXXXXXXXXXXXXXXDMIKKIPDADYLDKFWKEFSTNIKLGIMEDQANRTRLSKLLRFKSSNDAEKQTSLADYVARMKDKQEHIYFIAGSSLDEVKSSPFVERLLKRGYEVLYLTEPVDEYTMQSLPDFEGKKFQNVAKDGLKMGDDTXXXXXXXXXXXXXXXXXXXXXXDSLKDLIEKATVSQRLTESPCALVASSYGWSGNMERIMNSQAYAKAKDPTQNFYATQKKTLEVNVYHPLIKELHKRVGDNKEDQTAKDLARVMFETATMRSGYVIKDSADFAGRIERMLRLSMGVDLDAKV 2462
R W+ GL VL SV+A++ D + V+ED+GKSR+GS+TDDEVVQREEEAI +DGL+ ++++++RE SEK AFQAEV+RMMKLIINSLYKNKEIFLRELISN+SDALDKIR +SLTD +AL+ +EL++K+K DK+ ++LH+TDTG+GMT+++L+K LGTIAKSGTSEF +K+ EA Q+ S+LIGQFGVGFYSAFLVADKVIVTSK+N D QHIWESDS EFSV+ DPRG+TL RGT ++L LKEEA D+LE DT++NL+KKYSQFINF I++W SKTE VEEP+EE K+E+E +++ ++E + ++ K ++ KT WDWE+MN KPIW + KEV +DEY FYK+ +KESD PMA HF AEGEVTFKSIL+VPT++P +F +YG K+ + IKL+VRRVFITDDF DMMPKYL+F++G+VDSDDLPLNVSRE LQQHKLLKVI+KKLVRK LDMIKKI D Y D FWKEF TNIKLG++ED +NRTRL+KLLRF+SS+ TSL YV RMK+KQ+ IYF+AGSS E +SSPFVERLLK+GYEV+YLTEPVDEY +Q+LP+F+GK+FQNVAK+G+K + K K E +EKE+EPLL W+K+ +LKD IEKA VSQRLTESPCALVAS YGWSGNMERIM +QAY KD + N+YA+QKKT E+N HPLI+++ +R+ ++++D+T DLA V+FETAT+RSGY++ D+ + RIERMLRLS+ +D DAKV
Sbjct: 2 RALWVLGLCCVLLTFGSVRADDEVDVD---GTVEEDLGKSREGSRTDDEVVQREEEAIQLDGLNASQIRELREKSEKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENALSGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVLKEEASDYLELDTIKNLVKKYSQFINFPIYVWSSKTETVEEPMEEEEAAKEEKEESDDEAAVEEEEEEKKPKTKKV------EKTVWDWELMNDIKPIWQRPSKEVEEDEYKAFYKSFSKESDDPMAYIHFTAEGEVTFKSILFVPTSAPRGLFDEYGSKKSDYIKLYVRRVFITDDFHDMMPKYLNFVKGVVDSDDLPLNVSRETLQQHKLLKVIRKKLVRKTLDMIKKIADDKYNDTFWKEFGTNIKLGVIEDHSNRTRLAKLLRFQSSHHPTDITSLDQYVERMKEKQDKIYFMAGSSRKEAESSPFVERLLKKGYEVIYLTEPVDEYCIQALPEFDGKRFQNVAKEGVKFDESEKTKESREAVEKEFEPLLNWMKDKALKDKIEKAVVSQRLTESPCALVASQYGWSGNMERIMKAQAYQTGKDISTNYYASQKKTFEINPRHPLIRDMLRRIKEDEDDKTVLDLAVVLFETATLRSGYLLPDTKAYGDRIERMLRLSLNIDPDAKV 755 The following BLAST results are available for this feature:
BLAST of TCONS_00006607 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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