TCONS_00006932 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006932
Unique NameTCONS_00006932
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1740

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006932 ID=TCONS_00006932|Name=TCONS_00006932|organism=Clytia hemisphaerica|type=transcript|length=1740bp
TTAGTATTTCTTTACACGAGCTCCAAACCTGATTTAATAAACTTGAAATG
TATTAGATAGTCTAAGACTCTTCtcatttgtttattttcagtgttaaaca
aaacaaaatataaaacaatatCACGtgattaaaaatgaaagttttgatTG
GAGGAGGAACTGGGTTCGTTGGGCGCCATCTTGAAAAAGCATTACGTCAG
CGTGGACACACTGTACAACTTATCTCACGTTCAAAAGGTGCTGACAGAGT
GAGTTGGAGTGAACTAAAAGAAGAACAGAAGCTTCCTGAATGTGACGCTC
TTGTCAATCTATCAGGCGAATATATCTTGAATCCCTTCCGTCTTTGGAAT
GCGAGTTATAAGAAAGATATTTACGATAGCCGGATTGGAACTAACCAACT
ATTGACTGATTTGGTCACCAAAGCCACAACTCGACCATCCGTATGGGTAT
CTGCACACGCTGAAGGGATCTATCCACGGAGTCATCACAAAACATACGAC
GATCATTACCAGCCCGAAAGCAAAGAAGGTAACTATGGGCAACAGTTATG
TTACGATTGGGAAAAATCCGCCATGTTGCCTAGTGACGTCACTGATGTCC
GCCACGTGGGCATTCGAATCGGGTTAGTACTTGGGCGTGATGGTGGTTTT
ATACAGCAATCTTATTTACCGTTTTGGCTTGGTCTTGGTGGAACGGTAGG
CTCTGGTGATCAGAAATTCCCTTGGATTCATATTAAAGACACTGCTAATA
TATTTGTCCATGCTATTGAGAATGATAACATGACTGGCTTCTATAATGCT
ATTAGCCCTGGACAATGCAACTCTTCTGACTTTTCGCGTGCTTTTGGTGC
CGCCTTGAATCGACCTAGTTTTATGTGGGTACCTAGTTTCGTGATTCAAT
TAATGACCGGGCGAGATCGTGCGCCATTTATATTGGAAGGGTCACGAATT
AAACCTACACGAACTTTGGAGTCTGGTTTTCAATTTGAGTTCGAAGACAT
TGAACAAGCTATGGTTGATATTGTGAATACGAAATGAGCTTTCTTCtaat
tattcttttcttttttctttttcttatttctgatttgtaaatctttttta
ccgaaaaaataattatttgagtGCACCGTGAACTCTTTACAAGCGCCATC
ATTTAACCTAGTTTACTCAAATTTGACTCTAGTAGGTATTTTGTTGGAGA
ATTGAATTTATGTCCCGCTCGCTCATCTTTTCATTGAACAGGGGAAAATC
GGAAATGATTCTTTggattcaaattcaaaaattcccactcctttactttt
tgaagaaactgtttttttttgttcatcaCCACAAATTTTCTGATACTCTT
TCCCTAGAGAATTTGTgtaattttaaaggttttctctTTTTGTCATTTCA
CATGAAATACCTGCAAGTGCAATTACATCCAATTTGTTTAGCTTTCTATA
ATCTCACCAATCATTTAGGACCTCGATTTTAAGTTTCTTCTAATATCCAG
TCGTCCACAAGTCGTCTCTCAAGGATTCTTAGAGATGCATAAAGTTCAAT
GTTGACCTcgctttcaaacaaaatttcaatcaacgtgttatgatttttta
gcAATGCAAGTTTTCTTTCGTCTGTGGAATCTGAAATTAGTGGAAAATAT
TTATCACGTTTTCCGAAAACATTATTTGTAATAAAGAATAGAAAATccat
aaattttattttgaagaataaaTGATATGAACTAATAGAT
Run BLAST on NCBI

protein sequence of TCONS_00006932-protein

>TCONS_00006932-protein ID=TCONS_00006932-protein|Name=TCONS_00006932-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
MKVLIGGGTGFVGRHLEKALRQRGHTVQLISRSKGADRVSWSELKEEQKL
PECDALVNLSGEYILNPFRLWNASYKKDIYDSRIGTNQLLTDLVTKATTR
PSVWVSAHAEGIYPRSHHKTYDDHYQPESKEGNYGQQLCYDWEKSAMLPS
DVTDVRHVGIRIGLVLGRDGGFIQQSYLPFWLGLGGTVGSGDQKFPWIHI
KDTANIFVHAIENDNMTGFYNAISPGQCNSSDFSRAFGAALNRPSFMWVP
SFVIQLMTGRDRAPFILEGSRIKPTRTLESGFQFEFEDIEQAMVDIVNTK
Run BLAST on NCBI

transcript from alignment at sc0000072:323801..333003-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006932 ID=TCONS_00006932|Name=TCONS_00006932|organism=Clytia hemisphaerica|type=transcript|length=9203bp|location=Sequence derived from alignment at sc0000072:323801..333003- (Clytia hemisphaerica)
TTAGTATTTCTTTACACGAGCTCCAAACCTGATTTAATAAACTTGAAATG
TATTAGATAGTCTAAGACTCTTCTCATTTGTTTATTTTCAGTGTTAAACA
AAACAAAATATAAAACAATATCACGTGATTAAAAATGAAAGTTTTGATTG
GAGGAGGAACTGGGTTCGTTGGGCGCCATCTTGAAAAAGCATTACGTCAG
CGTGGACACACTGTACAACTTATCTCACGTTCAAAAGGTAAAAACTGATT
GACGAAGTTTCCAGCGATTGAAAAAAGCTGGAAAAACAGGTTCTCGACAG
TTTTGCACGGAAATGCATTTAATTATGCATGCACGTCATTATGTAATAAT
GAGATGCATGCGCTATTCAGCCTTTATATTCTGTTCAAAAAATTGAGAAA
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TGCGCTATTCAGCCTTTATATTCTGTTCAAAAAATTGAGAAAATCCTCGC
TCTTGCATTCACTCAAAGAAGTTAACATATGTGTGTGTGTGTGTGTGTGT
TTTGTAAAGCATCGTGTATCTTGTGAGAAGAGGAAAACCAACATGGCTGA
GCAACAACAGAATGTCGTAGACTACAATCAACTGCAAGTTATAATACAAC
AATTAGTTCGCAACGAAATGCAACCAGCTATGCAACAAGCTGAGAATCGT
GCCAAACAGGCACTCGACCAAACAACAGCCAGTACTTCGACAAATTTTTC
AAAATTAAAAGCTAAATTGGATAAGCAGAGATTAAATGACAACATCACAT
TTACGAAAGCTGGCCACACCGATCAATTCAAACACAATCAACAAGTGTTG
GAGGTTATTGACGACACCTTAGAAGCNTCTTCAACAAATACTAGGAGTAA
ATCCGGTTAAAAAAACTATATAATTGAGTTATGCTTTATCGACATTACAA
AAAAGACAATTTATTCGTGTTATTAATTTTAAAAACAAACACTCGCAATC
TGCTGAATTTTTAGACTATAATAATATATTTTTATCATATGACTAACGTT
GTGTTCTTAAATTGCCATCATAAGCCCATTATTCGTGTTTATGATTTTTA
AGAATGTCACTGATTTATAATTTATGCCTTTGTATTGGCTAATGAACGCA
TGACAATTCGTCGAATGAGATATTTTACCTTGATCAAATTTGTTTTTATT
TTACTTTCTTTCTTTTTTCGACTTTTCGCATTTTTGAAAAGTTTTTTCTT
ACTTTGCCACTCCAGAGAGATTTTGGGAATTTGATCAATCTACCGAAAGT
CTATCTGTCGCCGGAAGAATTCAGGAATTTTCAAACTTCTGGGAAAATGA
ATTGAAAGCNTGCATTTTGAAAAGTTTTTTCTTACTTTGCCACTCCAGAG
AGATTTTGGGAATTTGATCAATCTACCGAAAGTCTATCTGTCGCCGGAAG
AATTCAGGAATTTTCAAACTTCTGGGAAAATGAATTGAAAGCGTCGAATT
TCGCCCTCGGTATCGTGCGGGAAGGCTACAAAATACCATTCGAATCGGAA
CCTCCTCCATTTTTCGCCAAAAACAACGCATCTAGCTTAAAGAATCAAGA
GTTTGTCAAAGATAGTATTGAAAAGCTTTTAGAAAACGGTTGTATTGAAA
AAGTGACAGAGCCACCTTATTGCATCAATCCGCTGACCGTTGCAGAAAGG
AATTCCAAACTTAGGCTAGTACTAGATCTCAGGCATGTAAACAAACACAT
TCAGCCAAACAAATTCACATACGAAAATATAAAACAGGTTTCTGAGATGA
TTAATAAAGACGATTTTCTAATTACCTTTGACCTCAAAAGTGGGTATCAT
CACGTACCAATTAACTTAAGATTTCAGACTTTTCTAGGATTCGCTTGGGA
ATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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CGCTATTCAGCCTTTATATTCTGTTCAAAAAATTGAGAAAATCCTCGCTC
TTGCATTCACTCAAAGAAGTTAACTCATGCAAATTCAAACAATTTCGTTT
TCTATTTCATGCACTTATCTGGACCAACGTACCAACCGATGCACTTATCC
GGACGAACGTACCAATCCATACACTTATCCGGACGAACGTACCAATCGAA
AAGACACCGATTCAACATACAAAGAGAACTAAAGATCGGAATGGAAACCC
TAGCCACGGAAAGGACAACCAAAGATCAATAACATTGGAACAATCGGACG
AGCGCTTCTTCCTGGACTTCGAACAGAAGATCAATCAACGGCTCAGACGA
TCAACCACCAAGGAATACAATAGAATATACTAAAAGACGATCGATTACCA
AAACAAACGCCGGTCATTGGAGATTGACGCTCTTACCAACATTCACCACC
GACAACTTATTATCAAACATGGAATCGTGGATGTGTTTTATCAAGTTAAT
GAGTTAATGAATTTTGTATTCCTTAAACGAAAATTACAAATAGATTGATA
ACATTTTGAAGCTATGAAGCTCATACCTCGTAAAAGCCCATTATAATAAT
TATAATTTAAATTTATGATCTCTTACATTTGACGGTCAAACACTTGCAGA
TGGAATAATTTCGTTAGTAAAATATTTGTACATAAAGGGGAGAAGACCTT
TAACCTCCGAAGGTCGGGGTGACGGATGCCATTGGTTCGGAGATAATGTT
TCCTCCAGAATAAACAGCCACTGGGGGTTTTACGCTACACGCTTCNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTATTCGATGAAA
ATCTAATTCCCCTTGAAGATCGAATGCGTCAACTTTACATTCACTGATCA
CTTTCTTTGAATTCTGACCATAATTCTTTGATAAAAATCCTGTAGGTGCT
GACAGAGTGAGTTGGAGTGAACTAAAAGAAGAACAGAAGCTTCCTGAATG
TGACGCTCTTGTCAATCTATCAGGCGAATATATCTTGAATCCCTTCCGTC
TTTGGAATGCGAGTTATAAGAAAGATATTTACGATAGCCGGATTGGAACT
AACCAACTATTGACTGATTTGGTCACCAAAGGTAAAACATAACTTTATTT
AATTTTCTTTGGAGGTGACAAGAACTTTTAGTTATTTTTTGATGAAATTC
AAAAACCGATGTTGGATTTTATTCGTGTGTATATTTCCCTTGTGCTTTAC
CAACTCACTTGGAACAAGTCAGAATTTTCTCAGTTGCCTCATGAATGGCG
AGGGGGGGATTCTTTAAACTTATAAATTTAACCTAGTAAGTACTGTGCAG
TTTGGAACGTACCTCTGAAAACTACAAAATAAAGTAAATCCTGCTAATAA
CTTTTTTATGCTTGGAAAAAATTGATTAAAGAAGGTATGAGTCGATTGCG
GATGGCAAGTATGTAAGCCGAACTTCTTTATTTTAGCCACAACTCGACCA
TCCGTATGGGTATCTGCACACGCTGAAGGGATCTATCCACGGAGTCATCA
CAAAACATACGACGATCATTACCAGCCCGAAAGCAAAGAAGGTAACTATG
GGCAACAGTTATGTTACGATTGGGAAAAATCCGCCATGTTGCCTAGTGAC
GTCACTGATGTCCGCCACGTGGGCATTCGAATCGGGTTAGTACTTGGGCG
TGATGGTGGTTTTATACAGCAATCTTATTTACCGTTTTGGCTTGGTCTTG
GTGGAACGGTAGGCTCTGGTGATCAGAAATTCCCTTGGATTCATATTAAA
GACACTGCTAATATATTTGTCCATGCTATTGAGAATGATAACATGACTGG
CTTCTATAATGCTATTAGCCCTGGACAATGCAACTCTTCTGACTTTTCGC
GTGCTTTTGGTGCCGCCTTGAATCGACCTAGTTTTATGTGGGTACCTAGT
TTCGTGATTCAATTAATGACCGGGCGAGATCGTGCGCCATTTATATTGGA
AGGGTCACGAATTAAACCTACACGAACTTTGGAGTCTGGTTTTCAATTTG
AGTTCGAAGACATTGAACAAGCTATGGTTGATATTGTGAATACGAAATGA
GCTTTCTTCTAATTATTCTTTTCTTTTTTCTTTTTCTTATTTCTGATTTG
TAAATCTTTTTTACCGAAAAAATAATTATTTGAGTGCACCGTGAACTCTT
TACAAGCGCCATCATTTAACCTAGTTTACTCAAATTTGACTCTAGTAGGT
ATTTTGTTGGAGAATTGAATTTATGTCCCGCTCGCTCATCTTTTCATTGA
ACAGGGGAAAATCGGAAATGATTCTTTGGATTCAAATTCAAAAATTCCCA
CTCCTTTACTTTTTGAAGAAACTGTTTTTTTTTGTTCATCACCACAAATT
TTCTGATACTCTTTCCCTAGAGAATTTGTGTAATTTTAAAGGTTTTCTCT
TTTTGTCATTTCACATGAAATACCTGCAAGTGCAATTACATCCAATTTGT
TTAGCTTTCTATAATCTCACCAATCATTTAGGACCTCGATTTTAAGTTTC
TTCTAATATCCAGTCGTCCACAAGTCGTCTCTCAAGGATTCTTAGAGATG
CATAAAGTTCAATGTTGACCTCGCTTTCAAACAAAATTTCAATCAACGTG
TTATGATTTTTTAGCAATGCAAGTTTTCTTTCGTCTGTGGAATCTGAAAT
TAGTGGAAAATATTTATCACGTTTTCCGAAAACATTATTTGTAATAAAGA
ATAGAAAATCCATAAATTTTATTTTGAAGAATAAATGATATGAACTAATA
GAT

Coding sequence (CDS) from alignment at sc0000072:323801..333003-

>TCONS_00006932 ID=TCONS_00006932|Name=TCONS_00006932|organism=Clytia hemisphaerica|type=CDS|length=903bp|location=Sequence derived from alignment at sc0000072:323801..333003- (Clytia hemisphaerica)
ATGAAAGTTTTGATTGGAGGAGGAACTGGGTTCGTTGGGCGCCATCTTGA
AAAAGCATTACGTCAGCGTGGACACACTGTACAACTTATCTCACGTTCAA
AAGGTGCTGACAGAGTGAGTTGGAGTGAACTAAAAGAAGAACAGAAGCTT
CCTGAATGTGACGCTCTTGTCAATCTATCAGGCGAATATATCTTGAATCC
CTTCCGTCTTTGGAATGCGAGTTATAAGAAAGATATTTACGATAGCCGGA
TTGGAACTAACCAACTATTGACTGATTTGGTCACCAAAGCCACAACTCGA
CCATCCGTATGGGTATCTGCACACGCTGAAGGGATCTATCCACGGAGTCA
TCACAAAACATACGACGATCATTACCAGCCCGAAAGCAAAGAAGGTAACT
ATGGGCAACAGTTATGTTACGATTGGGAAAAATCCGCCATGTTGCCTAGT
GACGTCACTGATGTCCGCCACGTGGGCATTCGAATCGGGTTAGTACTTGG
GCGTGATGGTGGTTTTATACAGCAATCTTATTTACCGTTTTGGCTTGGTC
TTGGTGGAACGGTAGGCTCTGGTGATCAGAAATTCCCTTGGATTCATATT
AAAGACACTGCTAATATATTTGTCCATGCTATTGAGAATGATAACATGAC
TGGCTTCTATAATGCTATTAGCCCTGGACAATGCAACTCTTCTGACTTTT
CGCGTGCTTTTGGTGCCGCCTTGAATCGACCTAGTTTTATGTGGGTACCT
AGTTTCGTGATTCAATTAATGACCGGGCGAGATCGTGCGCCATTTATATT
GGAAGGGTCACGAATTAAACCTACACGAACTTTGGAGTCTGGTTTTCAAT
TTGAGTTCGAAGACATTGAACAAGCTATGGTTGATATTGTGAATACGAAA
TGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003878XLOC_003878Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006932-proteinTCONS_00006932-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006932-exon-sc0000072-1575043694:332767..333003TCONS_00006932-exon-sc0000072-1575043694:332767..333003Clytia hemisphaericaexon
TCONS_00006932-exon-sc0000072-1575043694:325473..325658TCONS_00006932-exon-sc0000072-1575043694:325473..325658Clytia hemisphaericaexon
TCONS_00006932-exon-sc0000072-1575043694:323801..325117TCONS_00006932-exon-sc0000072-1575043694:323801..325117Clytia hemisphaericaexon
TCONS_00006932-exon-sc0000072-1510915933:332767..333003TCONS_00006932-exon-sc0000072-1510915933:332767..333003Clytia hemisphaericaexon
TCONS_00006932-exon-sc0000072-1510915933:325473..325658TCONS_00006932-exon-sc0000072-1510915933:325473..325658Clytia hemisphaericaexon
TCONS_00006932-exon-sc0000072-1510915933:323801..325117TCONS_00006932-exon-sc0000072-1510915933:323801..325117Clytia hemisphaericaexon
TCONS_00006932-exon-sc0000072-1491911889:332767..333003TCONS_00006932-exon-sc0000072-1491911889:332767..333003Clytia hemisphaericaexon
TCONS_00006932-exon-sc0000072-1491911889:325473..325658TCONS_00006932-exon-sc0000072-1491911889:325473..325658Clytia hemisphaericaexon
TCONS_00006932-exon-sc0000072-1491911889:323801..325117TCONS_00006932-exon-sc0000072-1491911889:323801..325117Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000072supercontigsc0000072:323801..333003 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
36.9608	36.472	47.2539	50.3376	14.125	10.9889	12.7214	13.7225	13.884	13.8354	11.3865	10.6642	6.6578	6.86618	10.7372	10.4212	33.4522	29.705	4.23693	4.63986	18.4168	19.8021	30.9536	25.9432	13.0619	13.6336	12.2968	8.91854	21.2191	20.3611
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001509Epimerase_deHydtase
IPR010099SDR39U1
IPR013549DUF1731
IPR016040NAD(P)-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0050662coenzyme binding
GO:0003824catalytic activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity
molecular_function GO:0050662 coenzyme binding
Blast
[Close]
BLAST of TCONS_00006932 vs. Swiss-Prot (Human)
Match: D39U1 (Epimerase family protein SDR39U1 OS=Homo sapiens GN=SDR39U1 PE=1 SV=2)

HSP 1 Score: 232.261 bits (591), Expect = 2.719e-70
Identity = 119/275 (43.27%), Postives = 165/275 (60.00%), Query Frame = 3 
Query:  207 HTVQLISRSKGADRVSWSELKEEQKLPECDALVNLSGEYILNPFRLWNASYKKDIYDSRIGTNQLLTDLVTKATTRPSVWVSAHAEGIYPRSHHKTYDDHYQPESKEGNYG--QQLCYDWEKSAMLPSDVTDVRHVGIRIGLVLGRDGGFIQQSYLPFWLGLGGTVGSGDQKFPWIHIKDTANIFVHAIENDNMTGFYNAISPGQCNSSDFSRAFGAALNRPSFMWVPSFVIQLMTGRDRAPFILEGSRIKPTRTLESGFQFEFEDIEQAMVDIV 1025
            H V L+SR  G  R++W EL     LP CDA VNL+GE ILNP R WN +++K++  SR+ T QLL   +TKA   P  WV       Y  S    YD+    +S  G++     L   WE +A LP D T  R V +R G+VLGR GG +    LPF LGLGG +GSG Q FPWIHI D A I  HA+E +++ G  N ++P    +++F++  GAAL R +F+ +PS V+Q + GR RA  +LEG ++ P RTL +G+Q+ F ++  A+ +IV
Sbjct:   51 HEVTLVSRKPGPGRITWDELAAS-GLPSCDAAVNLAGENILNPLRRWNETFQKEVIGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLTAEYDE----DSPGGDFDFFSNLVTKWEAAARLPGDST--RQVVVRSGVVLGRGGGAMGHMLLPFRLGLGGPIGSGHQFFPWIHIGDLAGILTHALEANHVHGVLNGVAPSSATNAEFAQTLGAALGRRAFIPLPSAVVQAVFGRQRAIMLLEGQKVIPQRTLATGYQYSFPELGAALKEIV 318
The following BLAST results are available for this feature:
BLAST of TCONS_00006932 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
D39U12.719e-7043.27Epimerase family protein SDR39U1 OS=Homo sapiens G... [more]
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