TCONS_00007010 (transcript) - C. hemisphaerica

Overview
NameTCONS_00007010
Unique NameTCONS_00007010
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length794

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00007010 ID=TCONS_00007010|Name=TCONS_00007010|organism=Clytia hemisphaerica|type=transcript|length=794bp
CTAATCGTCTAATATCTTAATAACTGTATTTCAGTTGaatctctttaatt
cgattttaTGCGACTGCTTCGTAAGTACTAACTTAAACTTCCTTTCCATT
TACAGTGAATTCTAAACAATGATATAAAGCACAaactataaataaaaaac
actTTGAGAGATGGGTAAAGGAGGTGGCAAAGGCAACAGTAGTGGCGGCG
GTGGCGGTGCAAAAGGTGGAAAGGGCGGAGCAAAGGGCGGTAAAGGTGCT
AAAGGTGGAGATGATGGCGAGACCAAAAGTGCGAAGACAATCAAAGGAGG
AATTACAGTGAAGGTTCGCCATATCTTATGTGAGAAGCACGGGAAATGCA
TGGAAGCAATGGAACAGATCAAAGCAGGAAAGAAATTCAATGAAGTTGCC
ACACAGTTTAGTGAAGATAAAGCTAGATCAGGGgGTGATCTTGGCTGGAT
GACAAGAGGGTCTATGGTTGGGCCATTTCAAGACGCGGCCTTCGCTTTGA
CCCCGAGTACAGTTGACAAGCCGGTGTATACCGACCCTCCAGTGAAGACC
AAATTCGGCTATCACATTATAATGATTGAAGGGAAGAAATGATGTGTTTT
GGCGATCACTTTGGAAGAACAATTCGTGGATAAAAAAACAAGcacatttt
ataattttttacattATCTGGTTTGTATTCTACATTTCGACGCATATATT
GTCTTGAGAAAGATATAACTCTTTGTATAAagaagaatttttaaattttt
tctaaaacccAAACCCCCTTCTCAACACATTGACAAAATTCAAC
Run BLAST on NCBI

protein sequence of TCONS_00007010-protein

>TCONS_00007010-protein ID=TCONS_00007010-protein|Name=TCONS_00007010-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
MGKGGGKGNSSGGGGGAKGGKGGAKGGKGAKGGDDGETKSAKTIKGGITV
KVRHILCEKHGKCMEAMEQIKAGKKFNEVATQFSEDKARSGGDLGWMTRG
SMVGPFQDAAFALTPSTVDKPVYTDPPVKTKFGYHIIMIEGKK
Run BLAST on NCBI

transcript from alignment at sc0000073:97288..99558+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00007010 ID=TCONS_00007010|Name=TCONS_00007010|organism=Clytia hemisphaerica|type=transcript|length=2271bp|location=Sequence derived from alignment at sc0000073:97288..99558+ (Clytia hemisphaerica)
CTAATCGTCTAATATCTTAATAACTGTATTTCAGTTGaatctctttaatt
cgattttaTGCGACTGCTTCGTAAGTACTAACTTAAACTTCCTTTCCATT
TACAGTGAATTCTAAACAATGATATAAAGCACAaactataaataaaaaac
actTTGAGAGATGGGTAAAGGAGGTGGCAAAGGCAACAGTAGTGGCGGCG
GTGGCGGTGCAAAAGGTGGAAAGGGCGGAGCAAAGGGCGGTAAAGGTGCT
AAAGGTGGAGATGATGGCGGTAAGAGACTTTTGTACACTTCCCAACGCTG
AAAGATGTTTTATCATATGTAAGGCACAAATTGAAAGATGCATCTTTGCC
TAAAATTCAGTAGCTTAGTAACAGCGTCCACTTCTCCGGTAACTTATTAA
GAGCCAATTTCTGTAAGAATGGGGCAAAATTTGAGTAtcctgaaattttt
tatgaTCTCATCTTTAGATATTTTGTTCTTCAAagtgaaaaaatgagaaa
tccaAAAGGACAAGCAACGCTTAATTTGATTAATATGATATGTCGTATTT
TCTCTACAGAGACCAAAAGTGCGAAGACAATCAAAGGAGGAATTACAGTG
AAGGTATAACTACAATAAACTCCAtctacaatcggcgccgaaatatattg
ccAATTtcgagaattgcagtttcagtttgttttttttctactttgcttca
ttgaatttttcgatttgggcggggttaagtggcttccaggctatattctc
agccttactggaacattttttagcttttagatcctgagatcttgagtcta
atgttaaaactcttaaaccgtactttaaagcacttaaaaatcacttgcgc
ttttaaagttttgagggaattcccttTTTGTGCTAAATATTTCAGCGCCG
ATTGTAGTTTCTATATAGAAAGTGCTCttccaaatttgtttttctaaaaa
gcgAAAGCAAACGTGTTTACAGTTTTAGCGGGACTATAGaataaaaattt
tggaaatacaATTCATCTAAAATATGTATTATAAATACTATCATATCTTT
AACATTTATATCTCcttcatcaaaacaaaacagagcgCACTATGCCAGTT
CATtgttttatttgaatattttccatCGCTCTTGCGAGATTAGCAAACAG
TTAAGATCGGCTTTAACATTGTTATCTCCTTTATGCAGGTTCGCCATATC
TTATGTGAGAAGCACGGGAAATGCATGGAAGCAATGGAACAGATCAAAGC
AGGAAAGAAATTCAATGAAGTTGCCACACAGTTTAGTGAAGATAAAGCTA
GATCAGGGGTAGGTTTTAATTGTCACTTCAGATATATTACTCTCAGAATC
CAAACTCAGTGCTGTGCCATCCCATTTTATAACAAGGGATTGACGAACAT
TGCCAAGGGggtaatccaaaaaaaattaccagggggtcaaaagaaatgtt
ttttcaaataTCTCGAGAGTAAAGGAGGTTAAAGGACCTTCACTTTGTGG
CCCTTCTTTCTAAGGGTTTGTTTGaaagttttgcattttccaggGGTTAT
CCACACAATTTGTTTGTCAACCCCCTGTTCGGAAACTTTATGGAGCAGCA
CATTATCCTGAACTATCATCTTCTTAGATCTTTAAAATATCTCGAAACTT
TTTAGCTCTTGTCTCAACTACTGAACAAATGTCTGGTACAGACTAGGACA
CTCCACGGCATGATTGTAAACTTTTTGGATAGTTAGGAATTttatgtaat
ttttctttttttgtaggGTGATCTTGGCTGGATGACAAGAGGGTCTATGG
TACGTAAAATCTTTTCATCGTTTTTTCTATATGAAGTATTTTCAACTAAT
ATTTTGATCTAGAGAGAAAATTTTATCCCACTTGACGATTGGCATTTATG
TCAATTTCGTTTCTGTAACCCATTGAAATGATTTGTTCTTTAGGTTGGGC
CATTTCAAGACGCGGCCTTCGCTTTGACCCCGAGTACAGTTGACAAGCCG
GTGTATACCGACCCTCCAGTGAAGACCAAATTCGGCTATCACATTATAAT
GATTGAAGGGAAGAAATGATGTGTTTTGGCGATCACTTTGGAAGAACAAT
TCGTGGATAAAAAAACAAGcacattttataattttttacattATCTGGTT
TGTATTCTACATTTCGACGCATATATTGTCTTGAGAAAGATATAACTCTT
TGTATAAagaagaatttttaaattttttctaaaacccAAACCCCCTTCTC
AACACATTGACAAAATTCAAC

Coding sequence (CDS) from alignment at sc0000073:97288..99558+

>TCONS_00007010 ID=TCONS_00007010|Name=TCONS_00007010|organism=Clytia hemisphaerica|type=CDS|length=2160bp|location=Sequence derived from alignment at sc0000073:97288..99558+ (Clytia hemisphaerica)
ATGGGTAAAGGAGGTGGCAAAGGCAACAGTAGTGGCGGCGGTGGCGGTGC
AAAAGGTGGAAAGGGCGGAGCAAAGGGCGGTAAAGGTGCTAAAGGTGGAG
ATGATGGCGAGACCAAAAGTGCGAAGACAATCAAAGGAGGAATTACAGTG
AAGGTTCGCCATATCTTATGTGAGAAGCACGGGAAATGCATGGAAGCAAT
GGAACAGATCAAAGCAGGAAAGAAATTCAATGAAGTTGCCACACAGTTTA
GTGAAGATAAAGCTAGATCAGGGgGTGATCTTGGCTGGATGACAAGAGGG
TCTATGGTTGGGCCATTTCAAGACGCGGCCTTCGCTTTGACCCCGAGTAC
AGTTGACAAGCCGGTGTATACCGACCCTCCAGTGAAGACCAAATTCGGCT
ATCACATTATAATGATTGAAGGGAAGAAATGAATGGGTAAAGGAGGTGGC
AAAGGCAACAGTAGTGGCGGCGGTGGCGGTGCAAAAGGTGGAAAGGGCGG
AGCAAAGGGCGGTAAAGGTGCTAAAGGTGGAGATGATGGCGAGACCAAAA
GTGCGAAGACAATCAAAGGAGGAATTACAGTGAAGGTTCGCCATATCTTA
TGTGAGAAGCACGGGAAATGCATGGAAGCAATGGAACAGATCAAAGCAGG
AAAGAAATTCAATGAAGTTGCCACACAGTTTAGTGAAGATAAAGCTAGAT
CAGGGgGTGATCTTGGCTGGATGACAAGAGGGTCTATGGTTGGGCCATTT
CAAGACGCGGCCTTCGCTTTGACCCCGAGTACAGTTGACAAGCCGGTGTA
TACCGACCCTCCAGTGAAGACCAAATTCGGCTATCACATTATAATGATTG
AAGGGAAGAAATGAATGGGTAAAGGAGGTGGCAAAGGCAACAGTAGTGGC
GGCGGTGGCGGTGCAAAAGGTGGAAAGGGCGGAGCAAAGGGCGGTAAAGG
TGCTAAAGGTGGAGATGATGGCGAGACCAAAAGTGCGAAGACAATCAAAG
GAGGAATTACAGTGAAGGTTCGCCATATCTTATGTGAGAAGCACGGGAAA
TGCATGGAAGCAATGGAACAGATCAAAGCAGGAAAGAAATTCAATGAAGT
TGCCACACAGTTTAGTGAAGATAAAGCTAGATCAGGGgGTGATCTTGGCT
GGATGACAAGAGGGTCTATGGTTGGGCCATTTCAAGACGCGGCCTTCGCT
TTGACCCCGAGTACAGTTGACAAGCCGGTGTATACCGACCCTCCAGTGAA
GACCAAATTCGGCTATCACATTATAATGATTGAAGGGAAGAAATGAATGG
GTAAAGGAGGTGGCAAAGGCAACAGTAGTGGCGGCGGTGGCGGTGCAAAA
GGTGGAAAGGGCGGAGCAAAGGGCGGTAAAGGTGCTAAAGGTGGAGATGA
TGGCGAGACCAAAAGTGCGAAGACAATCAAAGGAGGAATTACAGTGAAGG
TTCGCCATATCTTATGTGAGAAGCACGGGAAATGCATGGAAGCAATGGAA
CAGATCAAAGCAGGAAAGAAATTCAATGAAGTTGCCACACAGTTTAGTGA
AGATAAAGCTAGATCAGGGgGTGATCTTGGCTGGATGACAAGAGGGTCTA
TGGTTGGGCCATTTCAAGACGCGGCCTTCGCTTTGACCCCGAGTACAGTT
GACAAGCCGGTGTATACCGACCCTCCAGTGAAGACCAAATTCGGCTATCA
CATTATAATGATTGAAGGGAAGAAATGAATGGGTAAAGGAGGTGGCAAAG
GCAACAGTAGTGGCGGCGGTGGCGGTGCAAAAGGTGGAAAGGGCGGAGCA
AAGGGCGGTAAAGGTGCTAAAGGTGGAGATGATGGCGAGACCAAAAGTGC
GAAGACAATCAAAGGAGGAATTACAGTGAAGGTTCGCCATATCTTATGTG
AGAAGCACGGGAAATGCATGGAAGCAATGGAACAGATCAAAGCAGGAAAG
AAATTCAATGAAGTTGCCACACAGTTTAGTGAAGATAAAGCTAGATCAGG
GgGTGATCTTGGCTGGATGACAAGAGGGTCTATGGTTGGGCCATTTCAAG
ACGCGGCCTTCGCTTTGACCCCGAGTACAGTTGACAAGCCGGTGTATACC
GACCCTCCAGTGAAGACCAAATTCGGCTATCACATTATAATGATTGAAGG
GAAGAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003924XLOC_003924Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007010-exon-sc0000073-1491911889:97288..97556TCONS_00007010-exon-sc0000073-1491911889:97288..97556Clytia hemisphaericaexon
TCONS_00007010-exon-sc0000073-1510915933:97288..97556TCONS_00007010-exon-sc0000073-1510915933:97288..97556Clytia hemisphaericaexon
TCONS_00007010-exon-sc0000073-1575043694:97288..97556TCONS_00007010-exon-sc0000073-1575043694:97288..97556Clytia hemisphaericaexon
TCONS_00007010-exon-sc0000073-1491911889:97847..97890TCONS_00007010-exon-sc0000073-1491911889:97847..97890Clytia hemisphaericaexon
TCONS_00007010-exon-sc0000073-1510915933:97847..97890TCONS_00007010-exon-sc0000073-1510915933:97847..97890Clytia hemisphaericaexon
TCONS_00007010-exon-sc0000073-1575043694:97847..97890TCONS_00007010-exon-sc0000073-1575043694:97847..97890Clytia hemisphaericaexon
TCONS_00007010-exon-sc0000073-1491911889:98476..98595TCONS_00007010-exon-sc0000073-1491911889:98476..98595Clytia hemisphaericaexon
TCONS_00007010-exon-sc0000073-1510915933:98476..98595TCONS_00007010-exon-sc0000073-1510915933:98476..98595Clytia hemisphaericaexon
TCONS_00007010-exon-sc0000073-1575043694:98476..98595TCONS_00007010-exon-sc0000073-1575043694:98476..98595Clytia hemisphaericaexon
TCONS_00007010-exon-sc0000073-1491911889:99054..99086TCONS_00007010-exon-sc0000073-1491911889:99054..99086Clytia hemisphaericaexon
TCONS_00007010-exon-sc0000073-1510915933:99054..99086TCONS_00007010-exon-sc0000073-1510915933:99054..99086Clytia hemisphaericaexon
TCONS_00007010-exon-sc0000073-1575043694:99054..99086TCONS_00007010-exon-sc0000073-1575043694:99054..99086Clytia hemisphaericaexon
TCONS_00007010-exon-sc0000073-1491911889:99231..99558TCONS_00007010-exon-sc0000073-1491911889:99231..99558Clytia hemisphaericaexon
TCONS_00007010-exon-sc0000073-1510915933:99231..99558TCONS_00007010-exon-sc0000073-1510915933:99231..99558Clytia hemisphaericaexon
TCONS_00007010-exon-sc0000073-1575043694:99231..99558TCONS_00007010-exon-sc0000073-1575043694:99231..99558Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00007010-proteinTCONS_00007010-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000073supercontigsc0000073:97288..99558 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
178.082	178.672	184.659	199.838	93.2339	73.8686	69.9388	75.0381	65.9579	70.3395	57.9121	70.3181	59.0105	63.3668	89.7077	109.477	87.1969	85.5954	33.5038	33.8653	54.5056	55.6312	127.854	102.726	59.0571	57.9952	74.7382	69.3133	79.9015	85.9921
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000297PPIase_PpiC
Vocabulary: Molecular Function
TermDefinition
GO:0016853isomerase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016853 isomerase activity
Blast
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BLAST of TCONS_00007010 vs. Swiss-Prot (Human)
Match: PIN4 (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 OS=Homo sapiens GN=PIN4 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.878e-53
Identity = 79/98 (80.61%), Postives = 89/98 (90.82%), Query Frame = 2 
Query:  296 GGITVKVRHILCEKHGKCMEAMEQIKAGKKFNEVATQFSEDKARSGGDLGWMTRGSMVGPFQDAAFALTPSTVDKPVYTDPPVKTKFGYHIIMIEGKK 589
            GG  VKVRHILCEKHGK MEAME++K+G +FNEVA Q+SEDKAR GGDLGWMTRGSMVGPFQ+AAFAL  S +DKPV+TDPPVKTKFGYHIIM+EG+K
Sbjct:   34 GGNAVKVRHILCEKHGKIMEAMEKLKSGMRFNEVAAQYSEDKARQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVFTDPPVKTKFGYHIIMVEGRK 131
The following BLAST results are available for this feature:
BLAST of TCONS_00007010 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PIN41.878e-5380.61Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
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