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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007477 ID=TCONS_00007477|Name=TCONS_00007477|organism=Clytia hemisphaerica|type=transcript|length=3301bpRun BLAST on NCBI protein sequence of TCONS_00007477-protein >TCONS_00007477-protein ID=TCONS_00007477-protein|Name=TCONS_00007477-protein|organism=Clytia hemisphaerica|type=polypeptide|length=773bp MAVDPRFERLPEHEGPAFRTWQLIMQTTMGSVVQQQATGGHIQLSNVPKPRun BLAST on NCBI transcript from alignment at sc0000077:698606..717378+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00007477 ID=TCONS_00007477|Name=TCONS_00007477|organism=Clytia hemisphaerica|type=transcript|length=18773bp|location=Sequence derived from alignment at sc0000077:698606..717378+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000077:698606..717378+ >TCONS_00007477 ID=TCONS_00007477|Name=TCONS_00007477|organism=Clytia hemisphaerica|type=CDS|length=2322bp|location=Sequence derived from alignment at sc0000077:698606..717378+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00007477 vs. Swiss-Prot (Human)
Match: PAPD5 (Non-canonical poly(A) RNA polymerase PAPD5 OS=Homo sapiens GN=PAPD5 PE=1 SV=2) HSP 1 Score: 348.977 bits (894), Expect = 1.124e-106 Identity = 169/328 (51.52%), Postives = 232/328 (70.73%), Query Frame = 1
Query: 511 PWKTHDHYPEDPVGLHLEISDFHKYMKPTIEEEKMRQNVVDRISALIVHIWPSAKVEVFGSFRTKLYLPTSDIDLAVFGKWEKLPLNTLKKELVNHGFADEETIKVLDKASVPIIKLTDKKSKIRVDISFNVESSIKSAELIKKYIEEFRILPSLFLIIKHFLVQRDLNEVFTGGISSYCLMLLTISFLQRHRKVDVRKTKNVNLGVLLMEFLELYGRNFNYQRIAVKIKDDGCYANKEMLAKELGEGTFLPLLCIEDPITHSCEIGKSSYGILRVKDAFEYGFNIIDRAIRN-KSYFKVNPNSTYLSRIVSVAREVEEYRQWIRTSY 1491
PWK + Y + VGLH EISDF++YM P EEEKMR VV+RI ++I +WPSA V++FGSF+T LYLPTSDIDL VFGKWE LPL TL++ L H ADE+++KVLDKA+VPIIKLTD ++++VDISFNV++ +++A+LIK + +++ +LP L L++K FL+QRDLNEVFTGGI SY L L+ +SFLQ H + D N N GVLL+EF ELYGR+FNY + ++IKD G Y K+ + K + +G +L IEDP+ ++G+SSYG ++VK AF+Y + ++ A+ Y+ N + L RI+ V EV YR WI +
Sbjct: 107 PWKRRN-YNQGVVGLHEEISDFYEYMSPRPEEEKMRMEVVNRIESVIKELWPSADVQIFGSFKTGLYLPTSDIDLVVFGKWENLPLWTLEEALRKHKVADEDSVKVLDKATVPIIKLTDSFTEVKVDISFNVQNGVRAADLIKDFTKKYPVLPYLVLVLKQFLLQRDLNEVFTGGIGSYSLFLMAVSFLQLHPREDA-CIPNTNYGVLLIEFFELYGRHFNYLKTGIRIKDGGSYVAKDEVQKNMLDGYRPSMLYIEDPLQPGNDVGRSSYGAMQVKQAFDYAYVVLSHAVSPIAKYYPNNETESILGRIIRVTDEVATYRDWISKQW 432 The following BLAST results are available for this feature:
BLAST of TCONS_00007477 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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