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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00007921 ID=TCONS_00007921|Name=TCONS_00007921|organism=Clytia hemisphaerica|type=transcript|length=2546bp
ttttttttatcagaagAGCAGTGCACGCAAAATTTCCATTCCATCAGTTT
ATCCATTAAGctttaagaaataaaataatttcaagaAGGAAGAATTATGA
GAGATGTTCCGACGAAAGAGACTGGTTTTCACCTTCTTACCTTTATTGGC
TTGCTTGTTTGTGTTATGGCAAATGACAACCAGGTCAGAGGACGATCCTT
TGATGCGACGTTTAAATAAAGGCATGGCAGAATCACTCCTTCTATCAGAA
AATatccaatctttttttccaTCTAAAGAACTATTTACCGCTAACAAAAA
CGCACGCAACTTTAAAAGACGTCGGAAAATGCGTAAAAGATCGATACCAT
CAGATGAAATATTCGACAAATTATATAGAGATTTTTTAGACTGTATGCTG
AAAAGTCAACGCAGTctagctttatttttgaacGATCAATATCAAAAGCA
GTTTAGACGTGATTTTCGGAGACGTCCCTCGGTAGAAAGTCCAATACTCG
AACCTGAATGCAAAGCAGACTTAGATCTTGTTATCGTTGTGACCACACGA
CCGGGAAACTTTTTAGAAAGGACATCTATCCGGTATTCATGGGGACGACC
GGGAGCTTACATTAACAGGTTTCTTATCAAACAAAAATCATTCACTTACA
AGACCATTTTTACACTGGGACGTGATCAGAATAATGTTATTGAAGATGTA
GTGTCCAAAGAAAACAGTCGGTACCGAGATATTCTACGTCTCGATTACCA
AGACACTTATGAGAATCTCGCTAAGAAAACCATACTGACTTTGAAATGGG
TTAACGAGGCATGCGCACCAAGATTTGTTCTCAAAACGGACGATGATTGT
TATGTTAATTTGCATAATTTATCACCATGGTTACTTCGGTTAAGCCCCTA
TGTAAACTACGTTGGaaagaaaaatgatttgatgCCTGTAATAAGGGACC
CAACACACCGTAATTACGTACCCTTTGACCTATTTAGTGAAGAATATTAC
AAAGTATATTGTTCAGGGGGCGGTTATATTCTACGTGGAACAGTGCTCGG
TAATATCACATCAAAAGCCAAAGAAATACCTGAAATTATAAACGAAGACG
CTTATCTTGGCATGATAACAAACGCGTTAGATATCATCCCATACGACGAC
GAGCGATTTCTTCCCTTCATCTTCGGTGATATAAACTTACGGAAACGACA
CATGTGTGACTGGGGCGATAAATTTTTGATGCACGGAGCGTCACCTAGAA
GACAGCTGCTTATGCATTGGCAAAAATTAGCAATGGTCAAATATAGCGTT
TTATGCGATTTGTAACGTCCATTTTTTCCTGATCCATCTTAATTTTTTGC
taatagtttttttttgaaattagttAGTTTCTAGACATTTTTACAATCTA
ACagacaaaaaaaacattatagATCTCGATAAAACATTCAGCTCGCTTTA
TCACAAAAGTATACAATATCAACGCACATTTATTTACAACTGTCTAAAAC
ACATAGTAAATCATTGAAAGTTAATTTTTCTAGCGGAGCCACGCCATGGT
AAGAGCGGCACCACAAATCGGTATCTTTCATTTTCCTCAAATCGCTGTAT
ACTTGAAGCTCTTTTCTTGAGGATTCCATTTCTCGTTGAAATTTGACACC
CCTGAACGTTTTTGAATCCATGTAAGTTTTATAAACCTCCTCAAAAGTTA
GCTGTTCTTTAGTTTTTAGCTCTTTGCAAACGTGACCTTTCTCAGATATG
TCAATGCTCGataaatcaaaataatcttgATTCAGTTCTTTGTCCATCAA
GTGGGAATAGCTCTCGACCAGTTTGCTGATATTGTCAGCAGTACCCACCT
CGTTATCACGTTTGCTACCATCATCTTGACAATTCCCTTTAATTTGACTC
GATTTTTCAACCCAACGCGAAGGGCGATTGAAAGTGACAGGATGGGCGCC
TTCGGGCGGCATTAAGGGCGCGGTCTCTTCATTTTTGATAGAAAGAGCAA
GTTTTTTGTCATCATATTGACCGTATTGATATTTGACGAAAGAGTCAGAC
TTCGGTCGCTTTTCTTTAAATAATGAAATTCGGTTGTCTTGCTTTGGACG
GCTGTCTTCGAAAGGCCTCACTTTTAAATGACGAGCCTTTTTCATAGGTG
TTGGAAACCTATGAGAAACTTTGAACTCTGcagtttcaaaataaatatca
ttcttcatttgagcaagttttttgatttcttcGTTGACAAGATGGGCATT
GGGTCCGTCTATGCAATAGCCATTCGGATTGTAACGTACGCTGACGAATT
TCTGTAACAACTTCCGGCGACCATCCATCGCAAAATAAAACTAAATCTAA
CTGAAGATGAAGTTTTAATGAAAAAGTAGCATAAGTCtagattttgtgat
ttgaaaagtgaaaaaatagaATGGATACACTTTTGAAATAGATGGTGaga
gaatgaaaaagaaattgttcCATTAAAGTAGGAATTATTCGCAGTTTGAA
GAATACAGAGTTGAGagagaaaaaatagaaaaaaataggGAATACA Run BLAST on NCBI protein sequence of TCONS_00007921-protein >TCONS_00007921-protein ID=TCONS_00007921-protein|Name=TCONS_00007921-protein|organism=Clytia hemisphaerica|type=polypeptide|length=403bp
MFRRKRLVFTFLPLLACLFVLWQMTTRSEDDPLMRRLNKGMAESLLLSEN
IQSFFPSKELFTANKNARNFKRRRKMRKRSIPSDEIFDKLYRDFLDCMLK
SQRSLALFLNDQYQKQFRRDFRRRPSVESPILEPECKADLDLVIVVTTRP
GNFLERTSIRYSWGRPGAYINRFLIKQKSFTYKTIFTLGRDQNNVIEDVV
SKENSRYRDILRLDYQDTYENLAKKTILTLKWVNEACAPRFVLKTDDDCY
VNLHNLSPWLLRLSPYVNYVGKKNDLMPVIRDPTHRNYVPFDLFSEEYYK
VYCSGGGYILRGTVLGNITSKAKEIPEIINEDAYLGMITNALDIIPYDDE
RFLPFIFGDINLRKRHMCDWGDKFLMHGASPRRQLLMHWQKLAMVKYSVL
CDL Run BLAST on NCBI transcript from alignment at sc0000080:500675..503709- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00007921 ID=TCONS_00007921|Name=TCONS_00007921|organism=Clytia hemisphaerica|type=transcript|length=3035bp|location=Sequence derived from alignment at sc0000080:500675..503709- (Clytia hemisphaerica)
TTTTTTTTATCAGAAGAGCAGTGCACGCAAAATTTCCATTCCATCAGTTT
ATCCATTAAGGTATACTAACTTTAAATCATAATTTATTCCAAGCCAAACA
TTACATATTTGAACACACTTGACTCTAACAAGCCACAAACTGTCAAATAC
ATACTTAACTCGATTTGAAAAGTTGTTTGCTTCTTATTCATGATATTCAT
GACGTAATGTTTTCTAAGGAAAGACCCCGGTTTTTGCCAGTAGTGGCAAG
TTTAATACAACTTTTGTCTAGTTTAAATTTGCCACTACTGGCTTAAACCG
GGCTTTTTCCGTAGAAAACATTACGTCATGAATATCATGAATTGCATCCT
GTCTTATTCAATTTTTCCGCATTTTTCTAACATTAAAAGAGTCTTACCAT
GAGTTTGGGCGAGAATATGTCTTCCTAGAACACCATCCTTCTTGTACGGG
CTAGAAATAGAAGAGAAGGTTAGCATGTAATGCGACACAACATTTTACAC
GATTAGAGCAGATTTCCTTGACAATTTATCACTTACTCTCTCATTTTAGC
TTTAAGAAATAAAATAATTTCAAGAAGGAAGAATTATGAGAGATGTTCCG
ACGAAAGAGACTGGTTTTCACCTTCTTACCTTTATTGGCTTGCTTGTTTG
TGTTATGGCAAATGACAACCAGGTCAGAGGACGATCCTTTGATGCGACGT
TTAAATAAAGGCATGGCAGAATCACTCCTTCTATCAGAAAATATCCAATC
TTTTTTTCCATCTAAAGAACTATTTACCGCTAACAAAAACGCACGCAACT
TTAAAAGACGTCGGAAAATGCGTAAAAGATCGATACCATCAGATGAAATA
TTCGACAAATTATATAGAGATTTTTTAGACTGTATGCTGAAAAGTCAACG
CAGTCTAGCTTTATTTTTGAACGATCAATATCAAAAGCAGTTTAGACGTG
ATTTTCGGAGACGTCCCTCGGTAGAAAGTCCAATACTCGAACCTGAATGC
AAAGCAGACTTAGATCTTGTTATCGTTGTGACCACACGACCGGGAAACTT
TTTAGAAAGGACATCTATCCGGTATTCATGGGGACGACCGGGAGCTTACA
TTAACAGGTTTCTTATCAAACAAAAATCATTCACTTACAAGACCATTTTT
ACACTGGGACGTGATCAGAATAATGTTATTGAAGATGTAGTGTCCAAAGA
AAACAGTCGGTACCGAGATATTCTACGTCTCGATTACCAAGACACTTATG
AGAATCTCGCTAAGAAAACCATACTGACTTTGAAATGGGTTAACGAGGCA
TGCGCACCAAGATTTGTTCTCAAAACGGACGATGATTGTTATGTTAATTT
GCATAATTTATCACCATGGTTACTTCGGTTAAGCCCCTATGTAAACTACG
TTGGAAAGAAAAATGATTTGATGCCTGTAATAAGGGACCCAACACACCGT
AATTACGTACCCTTTGACCTATTTAGTGAAGAATATTACAAAGTATATTG
TTCAGGGGGCGGTTATATTCTACGTGGAACAGTGCTCGGTAATATCACAT
CAAAAGCCAAAGAAATACCTGAAATTATAAACGAAGACGCTTATCTTGGC
ATGATAACAAACGCGTTAGATATCATCCCATACGACGACGAGCGATTTCT
TCCCTTCATCTTCGGTGATATAAACTTACGGAAACGACACATGTGTGACT
GGGGCGATAAATTTTTGATGCACGGAGCGTCACCTAGAAGACAGCTGCTT
ATGCATTGGCAAAAATTAGCAATGGTCAAATATAGCGTTTTATGCGATTT
GTAACGTCCATTTTTTCCTGATCCATCTTAATTTTTTGCTAATAGTTTTT
TTTTGAAATTAGTTAGTTTCTAGACATTTTTACAATCTAACAGACAAAAA
AAACATTATAGATCTCGATAAAACATTCAGCTCGCTTTATCACAAAAGTA
TACAATATCAACGCACATTTATTTACAACTGTCTAAAACACATAGTAAAT
CATTGAAAGTTAATTTTTCTAGCGGAGCCACGCCATGGTAAGAGCGGCAC
CACAAATCGGTATCTTTCATTTTCCTCAAATCGCTGTATACTTGAAGCTC
TTTTCTTGAGGATTCCATTTCTCGTTGAAATTTGACACCCCTGAACGTTT
TTGAATCCATGTAAGTTTTATAAACCTCCTCAAAAGTTAGCTGTTCTTTA
GTTTTTAGCTCTTTGCAAACGTGACCTTTCTCAGATATGTCAATGCTCGA
TAAATCAAAATAATCTTGATTCAGTTCTTTGTCCATCAAGTGGGAATAGC
TCTCGACCAGTTTGCTGATATTGTCAGCAGTACCCACCTCGTTATCACGT
TTGCTACCATCATCTTGACAATTCCCTTTAATTTGACTCGATTTTTCAAC
CCAACGCGAAGGGCGATTGAAAGTGACAGGATGGGCGCCTTCGGGCGGCA
TTAAGGGCGCGGTCTCTTCATTTTTGATAGAAAGAGCAAGTTTTTTGTCA
TCATATTGACCGTATTGATATTTGACGAAAGAGTCAGACTTCGGTCGCTT
TTCTTTAAATAATGAAATTCGGTTGTCTTGCTTTGGACGGCTGTCTTCGA
AAGGCCTCACTTTTAAATGACGAGCCTTTTTCATAGGTGTTGGAAACCTA
TGAGAAACTTTGAACTCTGCAGTTTCAAAATAAATATCATTCTTCATTTG
AGCAAGTTTTTTGATTTCTTCGTTGACAAGATGGGCATTGGGTCCGTCTA
TGCAATAGCCATTCGGATTGTAACGTACGCTGACGAATTTCTGTAACAAC
TTCCGGCGACCATCCATCGCAAAATAAAACTAAATCTAACTGAAGATGAA
GTTTTAATGAAAAAGTAGCATAAGTCTAGATTTTGTGATTTGAAAAGTGA
AAAAATAGAATGGATACACTTTTGAAATAGATGGTGAGAGAATGAAAAAG
AAATTGTTCCATTAAAGTAGGAATTATTCGCAGTTTGAAGAATACAGAGT
TGAGAGAGAAAAAATAGAAAAAAATAGGGAATACA Coding sequence (CDS) from alignment at sc0000080:500675..503709- >TCONS_00007921 ID=TCONS_00007921|Name=TCONS_00007921|organism=Clytia hemisphaerica|type=CDS|length=1212bp|location=Sequence derived from alignment at sc0000080:500675..503709- (Clytia hemisphaerica)
ATGTTCCGACGAAAGAGACTGGTTTTCACCTTCTTACCTTTATTGGCTTG
CTTGTTTGTGTTATGGCAAATGACAACCAGGTCAGAGGACGATCCTTTGA
TGCGACGTTTAAATAAAGGCATGGCAGAATCACTCCTTCTATCAGAAAAT
ATCCAATCTTTTTTTCCATCTAAAGAACTATTTACCGCTAACAAAAACGC
ACGCAACTTTAAAAGACGTCGGAAAATGCGTAAAAGATCGATACCATCAG
ATGAAATATTCGACAAATTATATAGAGATTTTTTAGACTGTATGCTGAAA
AGTCAACGCAGTCTAGCTTTATTTTTGAACGATCAATATCAAAAGCAGTT
TAGACGTGATTTTCGGAGACGTCCCTCGGTAGAAAGTCCAATACTCGAAC
CTGAATGCAAAGCAGACTTAGATCTTGTTATCGTTGTGACCACACGACCG
GGAAACTTTTTAGAAAGGACATCTATCCGGTATTCATGGGGACGACCGGG
AGCTTACATTAACAGGTTTCTTATCAAACAAAAATCATTCACTTACAAGA
CCATTTTTACACTGGGACGTGATCAGAATAATGTTATTGAAGATGTAGTG
TCCAAAGAAAACAGTCGGTACCGAGATATTCTACGTCTCGATTACCAAGA
CACTTATGAGAATCTCGCTAAGAAAACCATACTGACTTTGAAATGGGTTA
ACGAGGCATGCGCACCAAGATTTGTTCTCAAAACGGACGATGATTGTTAT
GTTAATTTGCATAATTTATCACCATGGTTACTTCGGTTAAGCCCCTATGT
AAACTACGTTGGAAAGAAAAATGATTTGATGCCTGTAATAAGGGACCCAA
CACACCGTAATTACGTACCCTTTGACCTATTTAGTGAAGAATATTACAAA
GTATATTGTTCAGGGGGCGGTTATATTCTACGTGGAACAGTGCTCGGTAA
TATCACATCAAAAGCCAAAGAAATACCTGAAATTATAAACGAAGACGCTT
ATCTTGGCATGATAACAAACGCGTTAGATATCATCCCATACGACGACGAG
CGATTTCTTCCCTTCATCTTCGGTGATATAAACTTACGGAAACGACACAT
GTGTGACTGGGGCGATAAATTTTTGATGCACGGAGCGTCACCTAGAAGAC
AGCTGCTTATGCATTGGCAAAAATTAGCAATGGTCAAATATAGCGTTTTA
TGCGATTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00007921-exon-sc0000080-1575043694:503650..503709 | TCONS_00007921-exon-sc0000080-1575043694:503650..503709 | Clytia hemisphaerica | exon |
| TCONS_00007921-exon-sc0000080-1575043694:500675..503160 | TCONS_00007921-exon-sc0000080-1575043694:500675..503160 | Clytia hemisphaerica | exon |
| TCONS_00007921-exon-sc0000080-1510915933:503650..503709 | TCONS_00007921-exon-sc0000080-1510915933:503650..503709 | Clytia hemisphaerica | exon |
| TCONS_00007921-exon-sc0000080-1510915933:500675..503160 | TCONS_00007921-exon-sc0000080-1510915933:500675..503160 | Clytia hemisphaerica | exon |
| TCONS_00007921-exon-sc0000080-1491911889:503650..503709 | TCONS_00007921-exon-sc0000080-1491911889:503650..503709 | Clytia hemisphaerica | exon |
| TCONS_00007921-exon-sc0000080-1491911889:500675..503160 | TCONS_00007921-exon-sc0000080-1491911889:500675..503160 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000080 | supercontig | sc0000080:500675..503709 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002659 | Glyco_trans_31 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008378 | galactosyltransferase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006486 | protein glycosylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006486 |
protein glycosylation |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0008378 |
galactosyltransferase activity |
Blast
BLAST of TCONS_00007921 vs. Swiss-Prot (Human)
Match: B3GT1 (Beta-1,3-galactosyltransferase 1 OS=Homo sapiens GN=B3GALT1 PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 2.605e-25 Identity = 77/246 (31.30%), Postives = 123/246 (50.00%), Query Frame = 2
Query: 461 DFRRRP----SVESPILEP-ECKADLD-LVIVVTTRPGNFLERTSIRYSWGRPGAYINRFLIKQKSFTYKTIFTLGRDQNNVIEDVVSKENSRYRDILRLDYQDTYENLAKKTILTLKWVNEACA-PRFVLKTDDDCYVNLHNLSPWLLRLSP------YVNYVGKKNDLMPVIRDPTHRNYVPFDLFSEEYYKVYCSGGGYILRGTVLGNITSKAKEIPEIINEDAYLGMITNALDIIPYDDERF 1159
+ R RP S E I EP +C+ ++ LVI+++T F R +IR +WG + K T+F LG++ + V+ +V +E+ + DI+ D+ D+Y NL KT++ ++WV C+ ++V+KTD D +VN+ NL LL+ S + YV IRD + Y+P DL+ + Y +CSG GYI V I + + ED Y+G+ L I P+ + F
Sbjct: 52 NIRTRPINPHSFEFLINEPNKCEKNIPFLVILISTTHKEFDARQAIRETWGDENNF--------KGIKIATLFLLGKNADPVLNQMVEQESQIFHDIIVEDFIDSYHNLTLKTLMGMRWVATFCSKAKYVMKTDSDIFVNMDNLIYKLLKPSTKPRRRYFTGYVINGGP----IRDVRSKWYMPRDLYPDSNYPPFCSGTGYIFSADVAELIYKTSLHTRLLHLEDVYVGLCLRKLGIHPFQNSGF 285
The following BLAST results are available for this feature:
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