TCONS_00008254 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008254
Unique NameTCONS_00008254
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1490

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008254 ID=TCONS_00008254|Name=TCONS_00008254|organism=Clytia hemisphaerica|type=transcript|length=1490bp
ATTCTTCAATGTTATACCTTAGGTGTTTAGAGGAGTGTGGGgaacgaaaa
tgaaaatattagATATTTAGACTttgaacaaaagaaacaaagatgGCACT
GCAGCCGCGAACGGCTTTCATATCTGCACTGgtgatattttttgttgttg
gaGCTCAAGCACGCATCAAAATCCGCAAAATCAAATTACCTCCTCTACCC
AAGAAGCCAGTTTACTTGGTGACCATACCACGAGTGGTATTCCCTGGTGA
AATTACCACAGCCACTTTCAGTATCCCACCTTTGAAGAAAGGTTTCACAC
TAACTGTTCGTCTGAACCATCGAGAATCGATCGATATCAGTCAAGAGGTT
GTGACGGAAGTCATGGCTCGTGATCGCAGACAATTGATTACGATCCCGAT
TAGAGTAGATGAAAGGAAATTTGGATCAGAAAAAAGGATTGTTTTCAAAT
TCTCAACCGACTCAGCCGAGACAGACGAAATGCCCTTTACAGCGAAACCA
CTTAATTTGGAAGTCAAATCGCTAAAAGATCGGTTATTCATACAAACCGA
TAAACCGATTTATAAACCCGGTGGAAAAGTTCGATTTCGGTTGGTCAGTG
TAAACAAGAACTTGAAACCAAATAGTGAGACTATCGATCAAGTTTACATT
TTGAATCCAACTGGGTCACGTGTCATGCAATGGACCAATCATACTCTTGA
TGGGGGAATGTCAAGTTTCGAAATGGCGCTATCCATCAAACCAGTCCTTG
GTACATGGAAGATTGTTGCCAAATCTGAAAAACTAAAAGCAGAAGTCAGT
ATTAAAGTTGAGAAATATGTCTTACCAAAATTCAAAGTGGACATTACGAC
ACCTTCGTATATTATGGATGATGATACTACCATCACCACCAAAATCTGTG
GAAAATATACGTATGGTAAAGAAGTCTCTGGAAAGTTGGAAGCATCACTT
TGCTTGAAACCAAATTCTTATTTACTAAGAATAAGATCAGATGATAAGAA
AACATTCTGCATCAACATTAACAAAAAGATTAAAGGATGTGAAAACATTG
AATTCCCCTTGAAGAAGATGATGAACAAACCTAAACGGCTTCGTTATTCA
GACTCCTACAGTAAATATTCCCTCAAAGTCATTGCAAATCTAACTGAGGA
GGGAACAGCTATCAAGCAAACTGAGGAACACCAATCAAAACACTTCTCGA
GACAACCTTAcgaaatcaaatttgaaattccaaaatattttaaacctgGA
ATGATTTTCCCAGTCAAGATGTTGGTCAACACACCAGATGGTCGACCAAA
ACAAACACCAACCAAAGTCTGGCTAACCATTTCTCCGACTCCCGGCCGCC
GGCAAAAACGTTTAGTCACTGTTATAAATGGTTATGATGAATTCAATGTC
TTCCCCAGAGCTGATTCaaccaaatatattttcaatgCGGAAGGTGTTCT
TCCAACCAAGAAGTCAGaagttatcaaaaagaaaaaggta
Run BLAST on NCBI

protein sequence of TCONS_00008254-protein

>TCONS_00008254-protein ID=TCONS_00008254-protein|Name=TCONS_00008254-protein|organism=Clytia hemisphaerica|type=polypeptide|length=466bp
MALQPRTAFISALVIFFVVGAQARIKIRKIKLPPLPKKPVYLVTIPRVVF
PGEITTATFSIPPLKKGFTLTVRLNHRESIDISQEVVTEVMARDRRQLIT
IPIRVDERKFGSEKRIVFKFSTDSAETDEMPFTAKPLNLEVKSLKDRLFI
QTDKPIYKPGGKVRFRLVSVNKNLKPNSETIDQVYILNPTGSRVMQWTNH
TLDGGMSSFEMALSIKPVLGTWKIVAKSEKLKAEVSIKVEKYVLPKFKVD
ITTPSYIMDDDTTITTKICGKYTYGKEVSGKLEASLCLKPNSYLLRIRSD
DKKTFCININKKIKGCENIEFPLKKMMNKPKRLRYSDSYSKYSLKVIANL
TEEGTAIKQTEEHQSKHFSRQPYEIKFEIPKYFKPGMIFPVKMLVNTPDG
RPKQTPTKVWLTISPTPGRRQKRLVTVINGYDEFNVFPRADSTKYIFNAE
GVLPTKKSEVIKKKKV
Run BLAST on NCBI

transcript from alignment at sc0000084:91541..102199+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008254 ID=TCONS_00008254|Name=TCONS_00008254|organism=Clytia hemisphaerica|type=transcript|length=10659bp|location=Sequence derived from alignment at sc0000084:91541..102199+ (Clytia hemisphaerica)
ATTCTTCAATGTTATACCTTAGGTGTTTAGAGGAGTGTGGGgaacgaaaa
tgaaaatattaggTTGGTGCAATATTGGATAGATAGAgagttgaattgaa
ttgaattgaattgaatatattttcgctgcaacacagcaggataacccctt
acaaaaaaaaatagatttctctaatacaatggggaacctagaagaNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttttgattgacttca
aaattccTGGCGTTATccatggttttgtttttgatctaACTTGACGTTTG
GTAAGTTTGACTGTGGGTAGATGTCTCTCTACAAGTACTTTAATTTTgtc
attaaaaatattgaaacaggaGTCTGGATTAGTTATCGAGAAGAATAGAG
TCTGCTACACTTGATACATTTTACAAATCTATTTTGCAGGCATTTGCATT
TTTTAGAGCCtccttttgagaaattttgaatctgttctttactttttgaa
ttttatgcctaaaagttttcttaaatgttcttactttcaccattttgtga
gtatttctcTGTAATCTCTTAAGACACTGGATGATTTAGAGTCTGTAAAG
CCTTATAATGGTTAATGTACTTCTGTATTTGAtatatcgaagccttatgc
tcttatatattTGTGTGTACAAATAGATATTTAGACTttgaacaaaagaa
acaaagatgGCACTGCAGCCGCGAACGGCTTTCATATCTGCACTGgtgat
attttttgttgttggaGCTCAAGCACGCATCAAAATCCGGTAAGTACATA
TTATTCTGTCGGAAATATCAGAATTTATATTTGATATttcaatgtatagc
aatgtgccctcccataatagctttatggcaactcctaaacttgggcacag
gatgtacggttacacattttgtggattgcattgtggagtcacaagagtgc
tcaaactgcgagcagcgagcaatgcataatgcaaatagtgagcgtcttaa
atgaagactctccacccaatccaagagtgctcaaactacAAAAGCAGTGA
GCCAATATTTGATATTTCAGCgatgtttaaattttcaaaaactataaaaa
atctgTGATCGAGTagtgaaaatttcgaaatacgTTTTAAGGATAAGTCA
ATCCACTCAAAAGTTAGCTTTCACGTACTTCTATTAATGATGCATTTTTC
TACcaaaggcaatttttttaaacatattaCCAAACTGTTTGGAACGAACA
TTACAAGTACGAACCCGGGGGGGGTGCTACCTATGCCGACCGAGGGGGTG
TGTtgctgaagttcgaaaaatgaaccctacgtgggactcgtatttttgaa
aaaagtgaccctgaatgggactgaaattcaaaagttttctcaaaattttc
cctattttttccaatttccccCAAAAAGGTTCCACACGAGGGACCGATTC
TTCTATTTTGGTGCTTTTGCGACCGTACGAGGGGCTGAAGTATACCCTGG
CCAGCGTCAGATCCCCGTACTGCTTTTTGCCCATGTACCCCTCCCCCGGG
AGTAAGAACCCCTCTTAGTTCGATCTATTGTTTAGAACCAAATTATATTT
CAGCAAAATCAAATTACCTCCTCTACCCAAGAAGCCAGTTTACTTGGTGA
CCATACCACGAGTGGTATTCCCTGGTGAAATTACCACAGCCACTTTCAGT
ATCCCACCTTTGAAGAAAGGTTTCACACTAACTGTTCGTCTGAACCATCG
AGAATCGATCGATATCAGTCAAGAGGTTGTGACGGAAGTCATGGCTCGTG
ATCGCAGACAATTGATTACGATCCCGATTAGAGTAGATGAAAGGAAATTT
GGATCAGAAAAAAGGTTTGTCAAAACgtttaatgttttttcataTATAGT
TTAGCAAGCACTAATTTAGACATAGAAGAAAATagagcaaaaagtaatgg
agggaacaattttagttatacaaactaaatccagtaacaataatcgtatt
atcatataacgcctatactactgtattacacgcattataaacgactccag
tcgtATATGAAATAGACTGTATTATTAAAAAAGTTGCTTCGTCTTAAATC
AGTGTCAGCTCTCTTTCTGTACTCGTGAATTTtaaggccaaaatattttt
ataagcttACTTTCTTCAATGTATATTGACCTGAAGAGCTTAAAATCAGC
ATTTTCTTCAATTGTTCTTTATTCACCCCTACAAAGcttggtcgaaatat
attgagatttaacgtttttcagaatttagagTCTTGGAGAGAATTTCAAA
TTTAGTACTTACACTTTATTTTATTGaacatttcgattttggaggggttc
gatggcttctaggctatatttccaGCCTTATTGGAGCAATTTGAGCTTTT
GAGTGAAGGATCCAAGTCTTCAGTCTCTATTTTTCAACCGTACTTTAACG
CGCTTAAAAttatttgtggtgtttaaaattttgcagggaaatctcctttg
tctcaaatattttgtccaagaTTGCAGGTATTGGCCTAAATTGTAACAAG
TTTTAAGCTATTCATAAATTGTTTTCGTAAAGCGTCATTTTACGCTTTTA
TTAATTTCTTTAGAGTAAAACCTAGACTTATCTGGTATTTTATCTGGTTT
CTCTATCATTCATTCCAAGGATTGTTTTCAAATTCTCAACCGACTCAGCC
GAGACAGACGAAATGCCCTTTACAGCGAAACCACTTAATTTGGAAGTCAA
ATCGCTAAAAGATCGGTTATTCATACAAACCGATAAACCGATTTATAAAC
CCGGTGGAAAAGGTATAGTTTCTTAATTCATAATTATCTAAACATAAAGC
AAGTCCTGCATGCGTCTGCACAGTCCCGTACAATCCATAGTTTACCTATA
CCAGACCCGGCAGAAACGGGAAGACTGGGGAGACTCAAGCCTCCCcattt
ttgagcaaatgagttttttttctcgaattcttagggaattttatctcatt
ttgagccttcagcctcctcACTTGTtgttccaccgggtctgtatACCCAA
AGGTGGGGAAGGACACCTTCACTTACCCTTGACAACTGTTTGACGAGAGA
CATCAGGTACCCTTGCCAAATCATTGGTAAGACTTCAAAATACTGTGATA
ACTGAAGTCTGATATACTGATACCATAACTGAAGGCTCTACAGCGTGTCC
TGGAATCGTCCTACGTCAGAACACGACTAacaaagtaattgaaactttag
agcaatccagggagaaagagtggtgccATCCCCTATCTTTGGTTAGATAG
CTATTGAaagagccttcgggtcgcctccgattgcggttgcagacttactt
acttaaacaCTTAACACTTCTTACGATGCAACAAAAACACAATTCACTTA
TAAAcctaataaaaattttaattgtgtAATAAAACATCTTAAAGGAATTT
CTCATATCAGACAAAGAAAAACGACATTAAATAAAACACACAAAttctaa
tttttgacataccacAAAAGCCTTTCTATACTTGAAGTCTGTTCTAACAC
AGGAGTTTTctgggacaccctgtacattcTCCGTAGTGTAAAAGTAAAGT
TCAACCTTCGGGTTGGTGGAGCTATCGACAGAGGAGCCTTCGGATCGCtt
gtgttgattttttttcatttaactcattttttatttacagTTCGATTTCG
GTTGGTCAGTGTAAACAAGAACTTGAAACCAAATAGTGAGGTATAATTTT
TGAATAATCTTAACAATAGAGCTGCCTGGTGCAGCAAATGTCGTAGAATA
AATTTATTGCAGTAGACTCTTGCTAAATCGAATttccattattcgaatct
ttctacaaATTGAACCTCAGTCCCTGGACAATCTTCGTAAAATGCTTTCT
GAAGCTCTAATCCTCATAATACACCCCTgcgtcacagacccgctgggacc
caagccccactggaaaatctggCCCAAATCTCGTTCCCGGTActaaaaat
accccaaaatttcAGGCCCACtgtgaaattgactttgatttcatccccat
tcaaatttcattgtaaaaaattgcactccaaaaccaccccCATTGGATTt
ttaagcttggaacaatagaatctctatccccattggaaaattttaccccc
gatgtggaaaaagtttcacccgaactatgagacaggggtgtcataatctc
tctgtaattcaaacGAATTTCACTTTCCGTTGGacttcgaattagcgaga
ttTAACTGTTCAATTTTAGGACTGATATATCCAAGCTTTTCCAATATAGA
GTGTTATTTTTATAAAACGTTTTAGGACATTAATCGGACGTCATTTATAC
AACATATAGTTCACATTCTTCCCTGGAAACagaagaaattttttccaaag
tgtTTTTAAATGTTTGACGGAAAATTCCGTCCAAGATTTGCGCCAAATAT
cttaactaaaatttacttgtttttgtttcataatCAGACGATTTATATTC
TTTatctttctcctttttattaGACTATCGATCAAGTTTACATTTTGGta
agttttctaataaagtcACTCTTACTTTTCTGTgattaaattaattttaa
aaaacatttttattttccgaGTGAAATACGAAGCTTTTTGGTAAGAGAAA
CTTAAATTATTAATTATCAGAATCGTATTTTTCGGTGACTGTTCACTAAT
TCCATCAAACATCGAATATAGAATTTATATTAACGAAGTAGGCTGAAAAT
GGGCAAAATGGACCCGCTTAGGAGGGTTATAACTTTTGCTCAAAGATAAA
TATAAAAGATCTGATATTATACTTGAAATCAGCTAGGTTCAAACTTTCAG
AAAAggataaattcaaaatttggtGGATTACGAGAAAAGTCATCTTTTTT
TAatgttcatttttcatcttcatgtAATAAGTTCTTAATATCATCCGCTC
TTAAGATTATTATTTCAACGATAGGTATTACTTTTAATTATACTTATTCT
CCTTCCTTCACGTGAAAAATGTACGGACTGCCAAAAAGAATGTACTTTAC
AAATTGACTGTGACGCTTTTTTGGGGAAACTTTTAAAGgaatttttatat
ttaattCATATTCTTTTATCTCCCATTTTTAGAATCCAACTGGGTCACGT
GTCATGCAATGGACCAATCATACTCTTGATGGGGGTAAATTGACTTAGTT
GAATTTTCCGGTTATCAATAGTTTAAATGTTCAATACAACCTTTTTAAac
acaattattttttttataagaacaagttaatttTTGATGAGGCTCGACTG
CTCTTATGATTTAGGCACTTTgaacttcaaatttttcttactcTATAATC
TTAGGACAAAATTTAAGTTCTTCTTCACACCtttaaattgattgaaatgA
CAATTGCAGGCTcagaattgttcttaaattgttcttattttttgacgatt
ttgagcctcgttgttcttatcaattctttcttataaaacaacGATTTTTT
TCTTTAGGAATGTCAAGTTTCGAAATGGCGCTATCCATCAAACCAGTCCT
TGGTACATGGAAGATTGTTGCCAAATCTGAAGTAGGTTTCTTATTTTATT
GATAGAATAATTTCTNATTGTTGCCAAATCTGAAGTAGGTTTCTTATTTT
ATTGATAGGATAATTTCTGATTCTGATTTTCTTgatcaacttttgaaaaa
atcttagCTTGATAGTCATCAAGTACATTCAAGTTAACACTCTTTTTTAC
TACCATgtagaaaccactctcaagggatCAAGTCTTATTGCACTTACCAT
GGTTTCCACATAATAACAAGAAAAGAAGGAATATTGATTctaattttccg
atttttcccACTTTTTTTTAGAAACTAAAAGCAGAAGTCAGTATTAAAGT
TGAGAAATATGGTAAGTCGAAATTTCTAAGCTATTATACTGTGTGTCCTG
ATGAAAAAAGTTGAATCGAATTTATATAAACACACCCCCTTTTCTTACGG
ACCCGGGGGGATTtaatcagccagtgggggtaacaATAACGGACccaaac
tcgatggggattgatagtCACATGTTTctaatggctggggatttgaattc
cattgttttctggtcaaaaaattcagtgtggatggaaaaaatagtacaat
attttgcagtggggatttgctcatctgattattttcagcgggacaaaaat
tagagtataattttccactgaggacgatatttttgccaatttttccagtg
ggaaggggttcccagtgggtctgtgagaagggggtttaTAAACAAAAATC
CTCATAATCTATACACATTTTTATGACCTGATCActaatttttggtaatt
ttttagatttttgtatcATTTATTGATTTCCCTTTTAGTCTTACCAAAAT
TCAAAGTGGACATTACGACACCTTCGTATATTATGGATGATGATACTACC
ATCACCACCAAAATCTGTGGAAAGTACGTTAATTTCATACCGCCATATAC
CTCCCGCCCTTATTAcagctttcgtttttaaatatGAGTGATATCGTTCG
CTTAACTCgtcattttaatttacaagctttttgagaTNGTTAATTTCATA
CCGCCATACCTCCCGCCCTTATTACAGGTTTCGTTTTTAAATCTGAGTGA
TACCGTTCGcttaactcgtcaattttaatttacaagctttttgagattga
attgacacggatgtggagcaaggttggtcagaaagaggaagagaaaaata
ttttttgcttatatcaacaTGTGATATTCATTCGAATTTTTCTTATAGAT
ATACGTATGGTAAAGAAGTCTCTGGAAAGTTGGAAGCATCACTTTGCTTG
AAACCAAATTCTTATTTACTAAGAATAAGATCAGATGATAAGAAAACATT
CTGCATCAACATTAACAAAAAGGTAAAGACAACACCTATGATCAACCTAT
AGACGATCCTATCGATtttatcactaaaaaagggaacagtttaggagagg
cgtgataaattcgggtggagtaagcagtggtgGTGATGTTTACAGTGTAC
AGTGTTCCAAAAACtttaccgccacttttttcccgtaaaccgccctgacg
ccctaactctttcccgcgtttactggcCTCTAAACGGACGAAATAATCGT
CTATTATCAACCTTAATGAGGGGGTAAAGCTCTAGTTAAGCGCTGTTTGC
ATGTCAGTacaacaaatgacgtcattcgaCACTTTCAATCTTGAATCTAG
TACCCTATTTCTACCTCATTTACATTTGGAGAGTAAAAATTTAGAGAGTA
AGGAATTTTGGCATGCGAGAATAAAATTGTAATGTTGTTTTCAATGATTT
TCCAAAACCTTTTCAGGATGAAAAATTAAACAGTGTGTAAGTCTTTTCAG
ACGAGGATGGCTATTTGTTAAATATTTCTTGTTTTTCAATCTTTAGATTA
AAGGATGTGAAAACATTGAATTCCCCTTGAAGAAGATGATGAACAAACCT
AAACGGCTTCGTTATTCAGACTCCTACAGTAAATATTCCCTCAAAGTCAT
TGCAAATCTAACTGAGGAGGGAACAGCTATCAAGCAAACTGAGGAACACC
AATCAAAACACTTCTCGAGACAACCTTAcgaaatcaaatttgaaattcca
aaatattttaaacctgGAATGATTTTCCCAGTCAAGGTAAGTTTCTTTAA
CATTTCATAAGAAGTGAGTAAAAATGTCTTAACTTTGCTTGTTGAGTATT
ATAGGATAGGTTACTTTCCGAAACTaagcaaaaacaacaaaaagtcaaaa
gcAGTCTCTCTAAAAAGCGGGTTTTTTAAATTAGCAAGTCAAGAACGACT
AATGCAATTGAAGAAGTTGTTTAAAAAGGGATCTTTCTAAAGGCCACCTT
TTCAACAGTTTAGTCTCTCAAGAGGTAACATGTTCAGCAGTTGACCATGC
CCAGCATACCATCCCACCGTCGCGTGTACCAAATTTACTGTATTGAAATT
CACTATATTGAAATTTACTTATTCAATCAATTTTAAGATGTTGGTCAACA
CACCAGATGGTCGACCAAAACAAACACCAACCAAAGTCTGGCTAACCATT
TCTCCGACTCCCGGCCGCCGGCAAAAACGTTTAGTCACTGTTATAAATGG
TTATGATGAATTCAATGTCTTCCCCAGAGCTGATTCaaccaaatatattt
tcaatgCGGAAGGTGTTCTTCCAACCAAGAAGTCAGaagttatcaaaaag
aaaaaggta

Coding sequence (CDS) from alignment at sc0000084:91541..102199+

>TCONS_00008254 ID=TCONS_00008254|Name=TCONS_00008254|organism=Clytia hemisphaerica|type=CDS|length=1398bp|location=Sequence derived from alignment at sc0000084:91541..102199+ (Clytia hemisphaerica)
atgGCACTGCAGCCGCGAACGGCTTTCATATCTGCACTGgtgatattttt
tgttgttggaGCTCAAGCACGCATCAAAATCCGCAAAATCAAATTACCTC
CTCTACCCAAGAAGCCAGTTTACTTGGTGACCATACCACGAGTGGTATTC
CCTGGTGAAATTACCACAGCCACTTTCAGTATCCCACCTTTGAAGAAAGG
TTTCACACTAACTGTTCGTCTGAACCATCGAGAATCGATCGATATCAGTC
AAGAGGTTGTGACGGAAGTCATGGCTCGTGATCGCAGACAATTGATTACG
ATCCCGATTAGAGTAGATGAAAGGAAATTTGGATCAGAAAAAAGGATTGT
TTTCAAATTCTCAACCGACTCAGCCGAGACAGACGAAATGCCCTTTACAG
CGAAACCACTTAATTTGGAAGTCAAATCGCTAAAAGATCGGTTATTCATA
CAAACCGATAAACCGATTTATAAACCCGGTGGAAAAGTTCGATTTCGGTT
GGTCAGTGTAAACAAGAACTTGAAACCAAATAGTGAGACTATCGATCAAG
TTTACATTTTGAATCCAACTGGGTCACGTGTCATGCAATGGACCAATCAT
ACTCTTGATGGGGGAATGTCAAGTTTCGAAATGGCGCTATCCATCAAACC
AGTCCTTGGTACATGGAAGATTGTTGCCAAATCTGAAAAACTAAAAGCAG
AAGTCAGTATTAAAGTTGAGAAATATGTCTTACCAAAATTCAAAGTGGAC
ATTACGACACCTTCGTATATTATGGATGATGATACTACCATCACCACCAA
AATCTGTGGAAAATATACGTATGGTAAAGAAGTCTCTGGAAAGTTGGAAG
CATCACTTTGCTTGAAACCAAATTCTTATTTACTAAGAATAAGATCAGAT
GATAAGAAAACATTCTGCATCAACATTAACAAAAAGATTAAAGGATGTGA
AAACATTGAATTCCCCTTGAAGAAGATGATGAACAAACCTAAACGGCTTC
GTTATTCAGACTCCTACAGTAAATATTCCCTCAAAGTCATTGCAAATCTA
ACTGAGGAGGGAACAGCTATCAAGCAAACTGAGGAACACCAATCAAAACA
CTTCTCGAGACAACCTTAcgaaatcaaatttgaaattccaaaatatttta
aacctgGAATGATTTTCCCAGTCAAGATGTTGGTCAACACACCAGATGGT
CGACCAAAACAAACACCAACCAAAGTCTGGCTAACCATTTCTCCGACTCC
CGGCCGCCGGCAAAAACGTTTAGTCACTGTTATAAATGGTTATGATGAAT
TCAATGTCTTCCCCAGAGCTGATTCaaccaaatatattttcaatgCGGAA
GGTGTTCTTCCAACCAAGAAGTCAGaagttatcaaaaagaaaaaggta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004645XLOC_004645Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008254-exon-sc0000084-1491911889:91541..91602TCONS_00008254-exon-sc0000084-1491911889:91541..91602Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1510915933:91541..91602TCONS_00008254-exon-sc0000084-1510915933:91541..91602Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1575043694:91541..91602TCONS_00008254-exon-sc0000084-1575043694:91541..91602Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1491911889:94617..94729TCONS_00008254-exon-sc0000084-1491911889:94617..94729Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1510915933:94617..94729TCONS_00008254-exon-sc0000084-1510915933:94617..94729Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1575043694:94617..94729TCONS_00008254-exon-sc0000084-1575043694:94617..94729Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1491911889:95544..95804TCONS_00008254-exon-sc0000084-1491911889:95544..95804Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1510915933:95544..95804TCONS_00008254-exon-sc0000084-1510915933:95544..95804Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1575043694:95544..95804TCONS_00008254-exon-sc0000084-1575043694:95544..95804Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1491911889:96610..96752TCONS_00008254-exon-sc0000084-1491911889:96610..96752Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1510915933:96610..96752TCONS_00008254-exon-sc0000084-1510915933:96610..96752Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1575043694:96610..96752TCONS_00008254-exon-sc0000084-1575043694:96610..96752Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1491911889:97631..97680TCONS_00008254-exon-sc0000084-1491911889:97631..97680Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1510915933:97631..97680TCONS_00008254-exon-sc0000084-1510915933:97631..97680Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1575043694:97631..97680TCONS_00008254-exon-sc0000084-1575043694:97631..97680Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1491911889:98464..98487TCONS_00008254-exon-sc0000084-1491911889:98464..98487Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1510915933:98464..98487TCONS_00008254-exon-sc0000084-1510915933:98464..98487Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1575043694:98464..98487TCONS_00008254-exon-sc0000084-1575043694:98464..98487Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1491911889:99073..99124TCONS_00008254-exon-sc0000084-1491911889:99073..99124Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1510915933:99073..99124TCONS_00008254-exon-sc0000084-1510915933:99073..99124Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1575043694:99073..99124TCONS_00008254-exon-sc0000084-1575043694:99073..99124Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1491911889:99448..99521TCONS_00008254-exon-sc0000084-1491911889:99448..99521Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1510915933:99448..99521TCONS_00008254-exon-sc0000084-1510915933:99448..99521Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1575043694:99448..99521TCONS_00008254-exon-sc0000084-1575043694:99448..99521Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1491911889:99812..99851TCONS_00008254-exon-sc0000084-1491911889:99812..99851Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1510915933:99812..99851TCONS_00008254-exon-sc0000084-1510915933:99812..99851Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1575043694:99812..99851TCONS_00008254-exon-sc0000084-1575043694:99812..99851Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1491911889:100329..100413TCONS_00008254-exon-sc0000084-1491911889:100329..100413Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1510915933:100329..100413TCONS_00008254-exon-sc0000084-1510915933:100329..100413Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1575043694:100329..100413TCONS_00008254-exon-sc0000084-1575043694:100329..100413Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1491911889:100739..100862TCONS_00008254-exon-sc0000084-1491911889:100739..100862Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1510915933:100739..100862TCONS_00008254-exon-sc0000084-1510915933:100739..100862Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1575043694:100739..100862TCONS_00008254-exon-sc0000084-1575043694:100739..100862Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1491911889:101387..101626TCONS_00008254-exon-sc0000084-1491911889:101387..101626Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1510915933:101387..101626TCONS_00008254-exon-sc0000084-1510915933:101387..101626Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1575043694:101387..101626TCONS_00008254-exon-sc0000084-1575043694:101387..101626Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1491911889:101978..102199TCONS_00008254-exon-sc0000084-1491911889:101978..102199Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1510915933:101978..102199TCONS_00008254-exon-sc0000084-1510915933:101978..102199Clytia hemisphaericaexon
TCONS_00008254-exon-sc0000084-1575043694:101978..102199TCONS_00008254-exon-sc0000084-1575043694:101978..102199Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008254-proteinTCONS_00008254-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084supercontigsc0000084:91541..102199 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
20.9476	22.5367	9.3878	6.42197	0.185963	3.58399	14.4289	12.6839	21.5561	50.0864	37.8961	16.0578	33.1921	39.2956	20.9367	45.496	10.384	13.5164	63.9656	94.1674	61.4285	76.7483	32.9155	45.3038	0.00113492	0.00252806	11.0889	9.57365	55.5424	68.9955
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002890A2M_N
IPR013783Ig-like_fold
Vocabulary: Molecular Function
TermDefinition
GO:0004866endopeptidase inhibitor activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0004866 endopeptidase inhibitor activity
Blast
[Close]
BLAST of TCONS_00008254 vs. Swiss-Prot (Human)
Match: A2MG (Alpha-2-macroglobulin OS=Homo sapiens GN=A2M PE=1 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 3.286e-34
Identity = 92/271 (33.95%), Postives = 142/271 (52.40%), Query Frame = 3 
Query:  513 VKSLKDRLFIQTDKPIYKPGGKVRFRLVSVNKNLKPNSETIDQVYILNPTGSRVMQWTNHTLDGGMSSFEMALSIKPVLGTWKIVA-KSEKLKAEVSIKVEKYVLPKFKVDITTPSYXXXXXXXXXXXXCGKYTYGKEVSGKLEASLCLKPNSYLLRIRSDDKKTFCININKKIKGCENIEFPLKKMMNKPKRLRYSDSYSKYSLKVIANLTEEGTAIKQTEEHQSKHFSRQPYEIKF-EIPKYFKPGMIFPVKMLVNTPDGRPKQTPTKV 1319
            VK+    +F+QTDK IYKPG  V+FR+VS+++N  P +E I  VYI +P G+R+ QW +  L+GG+  F   LS +P  G++K+V  K    + E    VE++VLPKF+V +T P  I   +  +   +CG YTYGK V G +  S+C K  S       +D + FC   + ++         +K  + + KR  Y     +  L   A + EEGT ++ T   QS   +R   ++ F ++  +F+ G+  P    V   DG+    P KV
Sbjct:  122 VKNEDSLVFVQTDKSIYKPGQTVKFRVVSMDENFHPLNELIPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKKSGGRTEHPFTVEEFVLPKFEVQVTVPKIITILEEEMNVSVCGLYTYGKPVPGHVTVSICRK-YSDASDCHGEDSQAFCEKFSGQLNSHGCFYQQVKTKVFQLKRKEY-----EMKLHTEAQIQEEGTVVELTGR-QSSEITRTITKLSFVKVDSHFRQGI--PFFGQVRLVDGKGVPIPNKV 383
The following BLAST results are available for this feature:
BLAST of TCONS_00008254 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
A2MG3.286e-3433.95Alpha-2-macroglobulin OS=Homo sapiens GN=A2M PE=1 ... [more]
back to top