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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008254 ID=TCONS_00008254|Name=TCONS_00008254|organism=Clytia hemisphaerica|type=transcript|length=1490bpRun BLAST on NCBI protein sequence of TCONS_00008254-protein >TCONS_00008254-protein ID=TCONS_00008254-protein|Name=TCONS_00008254-protein|organism=Clytia hemisphaerica|type=polypeptide|length=466bp MALQPRTAFISALVIFFVVGAQARIKIRKIKLPPLPKKPVYLVTIPRVVFRun BLAST on NCBI transcript from alignment at sc0000084:91541..102199+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008254 ID=TCONS_00008254|Name=TCONS_00008254|organism=Clytia hemisphaerica|type=transcript|length=10659bp|location=Sequence derived from alignment at sc0000084:91541..102199+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000084:91541..102199+ >TCONS_00008254 ID=TCONS_00008254|Name=TCONS_00008254|organism=Clytia hemisphaerica|type=CDS|length=16776bp|location=Sequence derived from alignment at sc0000084:91541..102199+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00008254 vs. Swiss-Prot (Human)
Match: A2MG (Alpha-2-macroglobulin OS=Homo sapiens GN=A2M PE=1 SV=3) HSP 1 Score: 138.272 bits (347), Expect = 3.286e-34 Identity = 92/271 (33.95%), Postives = 142/271 (52.40%), Query Frame = 3
Query: 513 VKSLKDRLFIQTDKPIYKPGGKVRFRLVSVNKNLKPNSETIDQVYILNPTGSRVMQWTNHTLDGGMSSFEMALSIKPVLGTWKIVA-KSEKLKAEVSIKVEKYVLPKFKVDITTPSYXXXXXXXXXXXXCGKYTYGKEVSGKLEASLCLKPNSYLLRIRSDDKKTFCININKKIKGCENIEFPLKKMMNKPKRLRYSDSYSKYSLKVIANLTEEGTAIKQTEEHQSKHFSRQPYEIKF-EIPKYFKPGMIFPVKMLVNTPDGRPKQTPTKV 1319
VK+ +F+QTDK IYKPG V+FR+VS+++N P +E I VYI +P G+R+ QW + L+GG+ F LS +P G++K+V K + E VE++VLPKF+V +T P I + + +CG YTYGK V G + S+C K S +D + FC + ++ +K + + KR Y + L A + EEGT ++ T QS +R ++ F ++ +F+ G+ P V DG+ P KV
Sbjct: 122 VKNEDSLVFVQTDKSIYKPGQTVKFRVVSMDENFHPLNELIPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQKKSGGRTEHPFTVEEFVLPKFEVQVTVPKIITILEEEMNVSVCGLYTYGKPVPGHVTVSICRK-YSDASDCHGEDSQAFCEKFSGQLNSHGCFYQQVKTKVFQLKRKEY-----EMKLHTEAQIQEEGTVVELTGR-QSSEITRTITKLSFVKVDSHFRQGI--PFFGQVRLVDGKGVPIPNKV 383 The following BLAST results are available for this feature:
BLAST of TCONS_00008254 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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