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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008587 ID=TCONS_00008587|Name=TCONS_00008587|organism=Clytia hemisphaerica|type=transcript|length=2845bpRun BLAST on NCBI protein sequence of TCONS_00008587-protein >TCONS_00008587-protein ID=TCONS_00008587-protein|Name=TCONS_00008587-protein|organism=Clytia hemisphaerica|type=polypeptide|length=697bp VYKIDVMSQTSHWFVFKRYKEFYNLHQKLIKQYKIPKDLLPPRKITNNMARun BLAST on NCBI transcript from alignment at sc0000086:892776..902965+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00008587 ID=TCONS_00008587|Name=TCONS_00008587|organism=Clytia hemisphaerica|type=transcript|length=10190bp|location=Sequence derived from alignment at sc0000086:892776..902965+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000086:892776..902965+ >TCONS_00008587 ID=TCONS_00008587|Name=TCONS_00008587|organism=Clytia hemisphaerica|type=CDS|length=33504bp|location=Sequence derived from alignment at sc0000086:892776..902965+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00008587 vs. Swiss-Prot (Human)
Match: NISCH (Nischarin OS=Homo sapiens GN=NISCH PE=1 SV=3) HSP 1 Score: 180.644 bits (457), Expect = 3.366e-46 Identity = 140/463 (30.24%), Postives = 219/463 (47.30%), Query Frame = 3
Query: 3 VYKIDVMSQTSHWFVFKRYKEFYNLHQKLIKQYKIPKDLLPPRKITNNMAKETLENRREALEHYLQKLLNSCNTGVRRSEDLAEFLDVKSHDVPHVTHDLTRYICKHGQSILLSKEMFRMSPSQLYCITKQLQLPHP---SGRNSVDLGYLYEFVSELKRLSITDFISQMSNGEQHEISFTFDLSIFTKLQELQMDAINVESLKGVQSLNSKLVKLTARHCINSMKSILIDAAIEKRNAPQVSHPGENWRIQAAYRLAENRIIFQPWHTLTHINFSHNNIISFDSSMSLLPALRQLDLSHNK------------LTHLDLDLVTAPXXXXXXXXXXXXXXXXXXTKTIDNLRHLNLSHNKVNCLEGLFCCQGLEELNLTYNNIAAINEVTKXXXXXXXXXXXVEGNHFAKKKRHRIIIFAYFRER--QLLLDKRPITQKEMAKLNSKLAALQRFEDIDDSLSN 1340
VY I V + W V RY +F++LH+KL+ + KI K+LLPP+KI ++ +E R + LE YLQKLL + R LA FL +++ +T L + + G+ +L + E+F + P QLY +T+QLQ P SG DLG++ +F LK L ++ E FDLSIF L ++++ + + ++G+ + L L+ R SMK +L+ A E + W + + W LT ++ SHN++ D S+ L+P + LDLSHN L HLDL N L TK + N++ LNL+ N + L GL L L+L N I + EV + SL L ++ + N + +R + A F ER ++ LD T+KE+ + L A+Q+ +++ LSN
Sbjct: 32 VYIIQVTDGSHEWTVKHRYSDFHDLHEKLVAERKIDKNLLPPKKIIGKNSRSLVEKREKDLEVYLQKLLAAFPGVTPRV--LAHFLHFHFYEINGITAALAEELFEKGEQLLGAGEVFAIGPLQLYAVTEQLQQGKPTCASGDAKTDLGHILDFTCRLKYLKVSGTEGPFGTSNIQEQLLPFDLSIFKSLHQVEISHCDAKHIRGLVASKPTLATLSVRFSATSMKEVLVPEASEF----------DEWEPEGTTLEGPVTAVIPTWQALTTLDLSHNSVSEIDESVKLIPKIEFLDLSHNGLLVVDNLQHLYNLVHLDLSY------------NKLSSLEGLHTK-LGNIKTLNLAGNLLESLSGLHKLYSLVNLDLRDNRIEQMEEVRSIGSLPCLEHVSLLNNPLSIIPDYRTKVLAQFGERASEVCLDDTVTTEKELDTVEV-LKAIQKAKEVKSKLSN 468 The following BLAST results are available for this feature:
BLAST of TCONS_00008587 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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