TCONS_00008689 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00008689
Unique Name	TCONS_00008689
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1871

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000087:29578..39781+

transcript sequence

>TCONS_00008689 ID=TCONS_00008689|Name=TCONS_00008689|organism=Clytia hemisphaerica|type=transcript|length=1871bp
aattttcattttaaacaatAACAGAATTTAGGCAAAATGCCAATGCAGAA
AACTTATAAAAGATATGCCTCCCTTGGCTCATTTGGTGTGGTTGGTAGCA
CACGTTCTAACTTATTGATGATCAATCAGATCCCTTATTTATCACATTCG
AAGAAAGAGAACACAACTTGTTGTGTGACTGCAGCTTTAGAGAGTGTAAT
CATTTGGGATGTTAGAAGAGGAGAGAAGattgcttttttgaagggcAATG
AGGATGAGGTTACATCAATTGCCCATTCTAAAAAAACATCACTCATTGCT
GTTGGTTACAGCAATGGTACAATTAAGTTATGGGACCTTAAAAACAATAC
CAGTGATGTGTTATTCAGTGGGCACAGATCGGCTATTTCTTGTTTGTGTT
TCGAGAAATCTGGCACAAAGCTCATCTCTGGATCCACAgataCTGATATT
ATTGTTTGGGACATAGTCGGTGAAACTGGCTTGTATAGATTGAAAGGACA
CAAAGGAATGATAACTGACTGTGTTTTCATGACCACGCACAATGTAATGA
TATCAAGCTCCAAGGACATGCTTGTTAAATTCTGGGACTTGGACAATCAA
CATTGCTTTTTAACAATAGTTGGCCACAAGACAGAGGTTTGGAAATTGTG
CTTATTGAACAATGAAACAAGGCTTATCACTGGTTCTGGTGACGCTGAGT
TACGATCTTATGAAATTAAAGAGGCTAGTGATAAAGAATCTTCAGGACTG
TTGAGTTGTGAATTGCTTGGCTCGATTTTGAGAGGTGGAAAAGGACGAGT
CATCTCATTATATTTAGAAGAAAAAGGGCAATACTTAGCATGTCATGGTG
TAGATTCAACATTAGATTTATTTGAAATTGTCGATGAAGATGATATACAA
AAAGCTTTGAAGAAAAGACgcaagaaaattataaaaaagcaaaagaaaat
gcCAGAAGCAGAACAAATTGACGAGGATAAGATATTGGTGGAGCGAGAAG
TGACAGATGAAATTAAGAAGGTCCAGTCATTCAGAATGTCACAAAAATTA
AGATCAGCCGCAATATCCTACAATAATACCAAAGAAGAGATCAAAGTTTT
GTCTATGTTCATCAATAACTCGTTTGGATATTACAAGATCGACTTGAGCG
CTCTCCCTACAAAATGTCAACTGCAATCCTTGATTTCAAACATGGGTCAC
CGTTCTGATGTCAGGACAGTGGGGTTCAATTCAGATGCTACCTTGATAAT
GACTGCTTCTGGAGAAAGTGTCAAAATTTGGAATAGgagtACACAAAAAT
GTATACGCACGATGGACTCtgattattgtctttgttcaaTGTTTGTGCCT
GGCGAACGACACGTGATCGTCGGAACAAAAACTGGTAAATTGCAATTGTT
CGACATCAGTTCTGGAATTCTCTTGGAAGCTGTTGATGCACACGAAGAAG
CTGTATGGAGTATTGCACTTTCTCCTGATAAAAACGGGTTTGTATCAGGA
AGTGCTGACCACGAAGTCAAATTTTGGGAATTCGATTTGATCATCGACGA
AGAATACTCCTCAATGGGTAAACGGCTAAGTATATCACACACTCAGACAT
TGAAAATGACAGAAGAAGTTCTTGCATTGAAATATAGcCCCGATGGTCGA
TTCTTAGCCGTGTCTTTACTGGACAGCACagttaaagttttctttgctGA
TACTCTAAAgTTCTTCTTATCATTATATGGACATAAGTTTCCTGTGCTTT
GTATGGATATCTCGCTGGACAGCACACTTTTAATCACTGGATCGGCtgat
aaaaacatcaaaatttgggGATTAGATTTCGGTGATTGCCACAAATCCAT
ATTTGCCCATGATGACAGGTT

Run BLAST on NCBI

transcript from alignment at sc0000087:29578..39781+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00008689 ID=TCONS_00008689|Name=TCONS_00008689|organism=Clytia hemisphaerica|type=transcript|length=10204bp|location=Sequence derived from alignment at sc0000087:29578..39781+ (Clytia hemisphaerica)
aattttcattttaaacaatAACAGAATTTAGGCAAAATGCCAATGCAGAA
AACTTATAAAAGATATGCCTCCCTTGGCTCATTTGGTGTGGTTGGTAGCA
CACGTTCTAACTTATTGATGATCAATCAGATCCCTTATTTATCACATTCG
AAGAAAGAGAACACAACTTGTTGTGTGACTGCAGCTTTAGAGAGTGTAAT
CATTTGGGATGTTAGAAGAGGAGAGAAGGTAATTTTGACCTCTTCTTATT
TTATAGAATGCTGTATAGCTTTAAAATTGTACTTTTTAATAAGTAcatta
acttttttaataaataagAATTGCCACTAATTGTAGCCTCAAATTGTTCG
CATTCTGGTCTTATGTTTAGGACTAAGATCAATTACCCTAGGCTTACTCT
AATTTATACGAATTTTACCCTTAATTTGCTTAAAGTTCTGTAATTCCAGG
CCCAACTTTGTTCTCAAAATGATCCTTAATCCTATGGCCTTTTGCGGCCT
TATTTTTAAGAAGAGcatttatatatttattatttctaaaaattattgtt
ttaaaaattttcatttagattgcttttttgaagggcAATGAGGATGAGGT
TACATCAATTGCCCATTCTAAAAAAACATCACTCATTGCTGTTGGGTAAA
TACTCATTAAACATCAGTGCTATAGAAACTATATTTGTTTATAATGAAAT
CTGATTTTTGCTAGCTGATCTATGGTAACAATGTTATAATACCGGTTGAc
ccagaaaaaagtaaaagGGTTTGATGGCtaactgttttcaaaaaatatac
agttgacgctctctaatttgacgttctaTAATTCAATAAGCTCCCCTTTT
CAATCAAATCGATAGTCATCGtcaaatttcttaagaaactctcataaaaa
aCACTCTACTATTCTACATTCTATGTTTCGATAAGTTcccattttcaatg
aaaatttgaagtccctTCAAGGTTTTCTGCTCCCTAATTCAATTTCTGGC
ATTTATGGttgatttcttttcaaatttttgaatttttttgtccaaacatt
caaattttccaaaacgaaatttaaaacaaaaacagacaGTCAGAAGATGT
TAGCCTAAAAACTCGAGTCTTATCTATACTTTCCCAGCTCTATAATCTGA
TATTTGCCTTGTTTTATTGAATTAGAGAGACttcctactattcgatacgc
tcctgTATTTGATGAAATTggaattccccttgaaaatctaATTAGTGAGT
GTCAACTGTAAtaacttttgatgattttttttttatcattgtaaagtgga
aaggcaaacttaaaacttggtatataactttttaaatttggttgaGTGGT
TCTCAAATTGTAAGCTTTggaagtcaaaatttagtttgGGAAAAGTCCAA
AAACACATTAAAAATGGGGTatcaaattaatgcaattctatGCAGAAAAc
ctcttattttcactattttgatAACTTTTACGACTCAATTAAAGCTGATT
TTTATAAATTATCCTAACAAAGAAAAGTTATGGCGAAAATTAGGAAATCA
GTTATTATgagcgatttaaaaaaatatttagtgaaaaatgttaaaaaatg
cttaatttgattttgattcgtttttggactttttcaaaagtgacttttga
ctttaaaagcttataacttgagaaCCACTGTACCAACTTTAAAAAGCCCC
CAGTAGTAATAGTGTTATCTCTTTTGAATAATGGTTTGAGATATTATATT
ATAATCGTCTTGAGCAAaaccttttttctcaaaagtttcCAAAGTTTAAT
ATCCAAGTTTAAGTATTTGTTGCATGTCCCTGATCTTTGTAATTTATAAT
GGTGTTTTCTGGGCctatcaaaaatttatttatttcattatatttgttgA
TTATTTCAATACTTCAAGAATGATGGTTTACATTATCAGtgattttaaat
taaaataatatttccATTTTTAATAATAGTTACAGCAATGGTACAATTAA
GTTATGGGACCTTAAAAACAATACCAGTGATGTGTTATTCAGGTTGGCCA
TTTTGATTATCTCTTCTTGCATAGTACCATCAACtaaatatttgtttatt
tttaactGTTAATTCAGACTCCTACACTTGAGGAATGTGATAGCAGTCAT
GTGCTTGCACACACATGCCTGAAATTTCCCCAGGGGTGTGATCAATCACA
CAACAGAAATTTAGATCCCCCCATCCTGTACTGCACACTTTTAGACAGCA
CTCCTTGTCACAATCCCTAATCTCAAAACTAACAATAGTAAAAAGGTAAC
TCTTACCAGATGTATGTATATACTATGTAAATGACCCAGTTACCAGCaca
tctaatttttttttttttaatatcatATTATTGTTTTAGTGGGCACAGAT
CGGCTATTTCTTGTTTGTGTTTCGAGAAATCTGGCACAAAGCTCATCTCT
GGATCCACAGTAAGCTAGACATTAAATTATAtgattgactttaaaattta
gaaaactaATGAAATGTGTAATCACTGGGAACTGTTTCAAACTGTTAAgg
gttttttttcaagtcatctattataaactacttttttttttttttaggat
aCTGATATTATTGTTTGGGACATAGTCGGTGAAACTGGCTTGTATAGGTA
ATATTTCACAAAAGGCATAATGACGTAGATTGAAGGAAGATAGAGAAATT
TCTTTGTATTCATTAAAACATTAATCTAAGGTCTTTCCTCTAAACATTTT
TTGCATTCTCGCGGGCAACCTTCCTAATTTAGCTAGCAGCATGAGAttgt
tatttataaaaaatttattcattaaACTTATTTAGATTGAAAGGACACAA
AGGAATGATAACTGACTGTGTTTTCATGACCACGCACAATGTAATGATAT
CAAGGTAAAATGGCTCTCaaattattattaattataCACTGCCACATTAA
TCATAATGCTTtgctttgaaaagtttttattcAATCGATATCTGTACAAA
AATTAGCTGCTTGaataaatttttcgaatttGTTCTAGCTCCAAGGACAT
GCTTGTTAAATTCTGGGACTTGGACAATCAACATTGCTTTTTAACAATAG
TTGGCCACAAGACAGAGGTATATCTCCCTTTTGATaagtatttttcaaat
tatttgatAATTCTAAAATAGATTGACCTCAAAACTGCTGGATGATAAAG
AAGTTTTTCAGGTTATTTAATCTACAAAATTCTGCTATTATAGGAAAAAT
TGAGCAAATTGAATCTTTTCTTCCATAAAGGAGAACCTGCAGGAAAAGTT
ACATAGTTTTAGTCAAACTAAAAATTGTTGCCTTTTTATAACAATTCTTT
ACAtaataatattatattgttttttaaattgtaaGGTTTGGAAATTGTGC
TTATTGAACAATGAAACAAGGCTTATCACTGGTTCTGGTGACGCTGAGTT
ACGATCTTATGAAATTAAAGAGGCTAGTGATAAAGAAGTAAGAAAATTAT
TTGTCCAGTTTGATTTTATACTCCTTTTTAGATCTTAAAACGTGGGATTT
TTTCTGCCTTGGTCAAGTTTataaaaagtacattttttGTCTCAAAGTTA
TTAGAATTTCGAAGATTCTATATTTTCAGGCAACTTGTATGAAAATTTGA
CATTCAACATACTCttctaaaagaaattaaaaattggaaattttctcATA
CTTTTAGTCTTCAGGACTGTTGAGTTGTGAATTGCTTGGCTCGATTTTGA
GAGGTGGAAAAGGACGAGTCATCTCATTACATTTAGAAGAAAAAGGGCAA
TACTTAGCATGTCATGTACGGATACTTTATTTTGTCTTGcttatttggta
tttttaaacATATATTTTGCTTCAAATTCAAGCCATTGaactttctaata
ttttttctgaACTTAAGCTTATTAATTAAATTTGATAGGAGTTCTTTTAA
GTTTTAGCATAATTTTCTATCAAAACCCTTCAATAAGAATTATTGAAAAA
TCACTATCACCGTTACAGTAGAATCCTGGATTTCTTGCCCGCTGTCTAAT
TAATACAATGCATATTTTATTTTAGGGTGTAGATTCAACATTAGATTTAT
TTGAAATTGTTNTTTCAGGTTATTTAATCTACAAAATTCTGCCATTATAg
gaaaaatcaatcaaattgaATCTTTTCTTCCATAAAGGAGAACCTGCCAG
GATAAGTTACATAGTTTTAGTCAAACTAAAAATTGTTGCCTTTTTATAAC
AATTCTTTACAtaataatattatattgttttttaaattgtaaGGTTTGGA
AATTGTGCTTATTGAACAATGAAACAAGGCTTATCACTGGTTCTGGTGAC
GCTGAGTTACGATCTTATGAAATTAAAGAGGCTAGTGATAAAGAAGTAAG
AAAATTATTTGTCCAGTTTGATTTTATACTGCTTTTTAGATCTTAAAACG
CGGAATTTTTTCTGCCTTGGTCAAGTTtataaaaattacatttttgtctC
AAAGTTATTAGAATTTCGAAGGTTCTATATTTTTAGGCAACTTGTATGAA
AATTTGACATTCAACATACTCTTCTAAAAGAAATTggaaattggaaattt
tttcatacTTTTAGTCTTCAGGACTGTTGAGTTGTGAATTGCTTGGCTCG
ATTTTGAGAGGTGGAAAAGGACGAGTCATCTCATTATATTTAGAAGAAAA
AGGGCAATACTTAGCATGTCATGTACGGATACTTTATTTTGTCTTGctta
tttggtatttttaaacATATATTTTGCTTCAAATTCAAGCCATTGaactt
tctaatattttttctgaACTTAAGCTTATTAATTACATTTGATAGGAGTT
CTTTTAGCATAATTTTCTATCAAAACCTTTCAATAAGAATTATTGAAAAA
TCACTATCACCGTTACGGTAGAATCCTGGATTTCTTGCCCGCTGTCTAAT
TAATAATACAATGCATATTTTATTTTAGGGTGTAGATTCAACATTAGATT
TATTTGAAATTGTCGATGAAGATGATATACAAAAAGCTTTGAAGAAAAGA
Cgcaagaaaattataaaaaagcaaaagtaaaaagttttttaaaatgaaaa
atctatGTTTGAAATCGACGTCCATAACAGAGAAATCCAAGAGAGAAATC
CAAATCTctgcaaaatattttggaatgaagtatacattagtaaaataaga
ATACTGAAAATTTTGGTCGTTACAAAAAGCAGAATCTGATTTATTCCAAG
TGTGAATTGATTATTGATTGGTTCATTATTCCTTGATTTTAAAAGCAGGG
TATAATCTGgtataatattttgttttttaggaaaatgcCAGAAGCAGAAC
AAATTGACGAGGTATTAACAAGGAAGTTGAAATCTCAGCAAAGTTTTTTC
AATAGAGATTATGCATTTGAAGAATAATAATATACAAATATGACTTGCAA
TTGAAGAACAatcaattttgacatttttccaAACTTTTTTACTAGGATAA
GATATTGGTGGAGCGAGAAGTGACAGATGAAATTAAGAAGGTCCAGTCAT
TCAGAATGTCACAAAAATTAAGGTAtgttttcttgtaatttttttttttc
gccaATCAAACTTCTTTTTGTACAGTAAAATCTGAAAGTTTGACATTTCA
CAATTGACCTTCAATCTTATACTTATAGGATATTATAgtacaaatcaaaa
cattgagtcCTTCAAAATGAATACCTTTCTAAATTCATAGATCAGCCGCA
ATATCCTACAATAATACCAAAGAAGAGATCAAAGTTTTGTCTATGTTCAT
CAATAACTCGTTTGGATATTACAAGATCGACTTGAGCGCTCTCCCTACAA
AATGTCAACTGCAATCCTTGATTTCAAACATGGGTCACCGTTCTGATGTC
AGGTACAAATAAGTTGGAATGGTTTTtcagaataaattttttttcttaca
taTAAAAAAGATACTGTATTTCTGACTaaccaaaaataaggtaaattatt
aaaaaacgtTAATCCCATAACTTTGTGCGGCCTCCTTACCCTTTctgtgc
cgatgtcgtatatatccgacatgcaaattttcactctacttgccaatgtc
ggatatatccgacatcaaatttatttttttttatatccgacataaaaaaa
tccaaatagtAATAGTGACAGTATATATTAAGTGCTCAAAAGATTTATTT
CAGGTTTATTTTAGTCTATCATAAAATATATATNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TTGGGATTTAGGTATAAATTATTGGGATTTAGGTATAAATTATTGGGATT
TAGGTATAAATTATTGGGATTTAGGTATAAATTATTGGGATTTAGGTATA
AATTGGGCATTTCAACCAATTGCCTCAAGACTCTATGTTTGGAAAATAAC
AGATTATTTTATCCCTCTATTCAATATTCAGGACAGTGGGGTTCAATTCA
GATGCTACCTTGATAATGACTGCTTCTGGAGAAAGTGTCAAAATTTGGAA
TAGGTATATTAAAACTTCTTATTATCAGCCATTGAAAATCGTGAAGCTCA
ACAAGAAAtagaaaattgctcaaattggTGAATGGTTGAAGACACTCTTA
GCTCGTTATTAAACAAGTGTTTCCAGTCCCTGAACGCGGGCTTAGTATGA
TTGAGTGTAAGCGGtgtaaaacattttcacatcTCCGTCATGCCCTTTTT
ATAATGCAATCAAATGCTAGCACTCGCTCTGTAGTTGTCTTCTGACCAAC
AAGCAGAACCATTAGAAAGCCAATGATCCAGCATAACTCAAACTTGCAAA
TCATGCCATTCGCCGACATttgctttattttattttaaattttaacatct
aatttttttttcaggagtACACAAAAATGTATACGCACGATGGACTCtga
ttattgtctttgttcaaTGTTTGTGCCTGGCGAACGACACGTGATCGTCG
GAACAAAAGTAAGTCGGGTTGTCCGAAAGCAATCCAATTTTTGTGGACAA
TTTGAAACTtattaatgaaaatttaaagCTTTCAAAGATTCAGaatttac
cttattacacgaatattactagtcaatTTATTaaaacgaattgaaaaatt
tcgtgttaataaaaaacccttaattaaaaccagccgtggtctccttaaaa
aagcattttttgcgTGTTAAATTCAAGGaagttgaatacttgcctagtaa
tatttgtgtaataaggtatttggAGGTCAACCCTTTTTTTATACATGAAG
ATACAGCAAGATGTCACTAATTCCCAGTTCAGAACTCCCGAACCcccaaa
atgtgaaaatattAGAACCTTAGCTTTAGAATCATTAACCCACAACTCTA
TATAGCAACATTTTTACTGCATCCCATAGGTCTAAAGaatgaaatctaaa
aatttattACTCAAAATGGGTATTGATTTGAAAATGGCTTTTAGTTTCTT
GACCAGAACCTTAGGTGAAAAAAGAAGTTGTTTGACAGGATGTAGAAATT
TGTTGTATTGAAAATCTTTTCTGTTTGAGATAAAGGGCTATTAACAGGCG
CTGTTTTCAAACACCCTCTAAATAGTAGTAGCACTCCCGTGTCTCTTGAG
TTTCAGCTCAACAGTGAAGACCTACTGTAAATAATCAGTTGCTTTTAAAA
CTGCCAGTTGCAAAACAAACAGTGATAACACTTTGTCACCATTTTTAGAC
TGGTAAATTGCAATTGTTCGACATCAGTTCTGGAATTCTCTTGGAAGCTG
TTGATGCACACGAAGAAGCTGTATGGAGTATTGCACTTTCTCCTGATAAA
GTAAGTCTGTATGACAATGCTGTCAATTTCTTAATACAGTGGAGTGTCTT
GAATAAGTTAAATGGATGCATTCAATACACTTTACTTCATTACATTTGTT
TTCTTAAACCTCGATAATTACTTTCAGTTTATCAAATACATTCcgtgttg
ttgttgtttctcAATAGAACGGGTTTGTATCAGGAAGTGCTGACCACGAA
GTCAAATTTTGGGAATTCGATTTGATCATCGACGAAGAATACTCCTCAAT
GGGGTACGGTTTTTTtatatactctcgggtacctaatagccgggggattt
ggaataagcgggggtggttggaaaaaatcgaaaaacttatgtaataagcg
gggggagttggaataaaaatgtcctgggtggaaaatttttgaaaaggagg
ctaatacagcagaattaggacaaaagagggaactttcaaaaatatttttc
caaaaattaataagcggggggttggaataaaaatgtcctgggtggaaaat
ttttgaaaaggaggctaatacagcagaattaggacaaaagagggaacttt
caaaaatatttttccaaaaattaataagcggggggctggaataagaatgt
cctgggtggaaaattttcgaaaaattaattagcagggggggggacggcta
ttaggtacccgagagtacctttgattttttttctcaatattcTTATTTCC
ACTATCAAGTTTAAATCAACAGTTTTTCTTTCCACAAATAAATCATTATG
TAGGAACCATGATAAGCTTTTCCTTACGTGAGACCTAGTTTAGCGTCCAT
GCAACACTTATTCTAGAAGATGAGTTTTGTTACTTATTTATTGAATTTCT
TTACAATGTTGATAATGCTCTTATTGTCGTTTTGGTTTTTAGTAAACGGC
TAAGTATATCACACACTCAGACATTGAAAATGACAGAAGAAGTTCTTGCA
TTGAAATATAGGTAGgtacttcattttttttctgatcCTGCTTATGTTAA
CTCAAGTTTAAAACAGTAATCACGACCGAGTGGTCTCCAATCTATCAATC
AGGAAAGATTCTTTGTAGTTATGATTTTAGAAATATCACAattgataaaa
agtaaaaaaaatcttttattttatttaagcCCCGATGGTCGATTCTTAGC
CGTGTCTTTACTGGACAGCACagttaaagttttctttgctGATACTCTAA
AggtaaaaagaagaaatatcTTCTTGAGTTTTATTTATACTTAAAATTcc
tattttctttgattctcTAACTACATTCACAACAACTCGATCTTATTGTT
TACTTCTTGGTCTAAACGACTTCTAAACAACTTCCAGTTTGATACAACTA
TAATTAACAGATCAAGTTCATatattttgttttacttttcagTTCTTCTT
ATCATTATATGGACATAAGTTTCCTGTGCTTTGTATGGATATCTCGCTGG
TAAGTTGTTACCATTACCCATAAGCTTTACACTTGCCTTGACGTAATGTG
GTATCTTTTCACACAACCTTATTCAAAGTTATCTGacactcgatgtagaa
atttcttccaatacgctaaagctctgaatgTCGGGAAAACTTTCAACATT
TGGAAAGCGGAATTTCGCCAGACTGCGTAGAGGATTTTACGGGTTGAGGC
CTAAACCCAAGCCCCCGTTTTTGAGGAATTTCTGGTCCAAGCACAGTATT
TTCAGGGCCGTTGAGCCCGACTGGAGGGAATGTGGTTCATCACAGGCCGA
CTGGTATTCCGGGAAATTAGCCCACTCCATTAGAGCCTTAGCGTGGGTaa
ccgccaatccgccatcggaatatcagatattATTCAAAGCAGTTCAAAGG
CTGGTTTGCAGGAATATGATAAAAATACCGTTTATTCTCAAATCATATAG
GACAGCACACTTTTAATCACTGGATCGGCtgataaaaacatcaaaatttg
ggGATTAGATTTCGGTGATTGCCACAAATCCATATTTGCCCATGATGACA
GGTT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_004885	XLOC_004885	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000087	supercontig	sc0000087:29578..39781 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.85986	8.37671	3.90276	3.09296	11.452	7.48188	12.2358	13.1518	8.17938	8.61239	7.65765	6.00595	10.1642	12.0387	8.90002	11.1249	7.07706	11.0082	2.59183	2.03862	7.75827	7.51425	10.4796	11.9226	8.43886	8.2559	2.85635	1.99739	8.20639	8.99872

Blast

[Close]

BLAST of TCONS_00008689 vs. Swiss-Prot (Human)
Match: WDR3 (WD repeat-containing protein 3 OS=Homo sapiens GN=WDR3 PE=1 SV=1)

HSP 1 Score: 568.54 bits (1464), Expect = 0.000e+0
Identity = 303/645 (46.98%), Postives = 431/645 (66.82%), Query Frame = 1

Query:   37 MPMQKTYKRYASLGSFGVVGSTRSNLLMINQIPYLSHSKKENTTCCVTAALESVIIWDVRRGEKIAFLKGNEDEVTSIAHSKKTSLIAVGYSNGTIKLWDLKNNTSDVLFSGHRSAISCLCFEKSGTKLISGSTDTDIIVWDIVGETGLYRLKGHKGMITDCVFMTTHNVMISSSKDMLVKFWDLDNQHCFLTIVGHKTEVWKLCLLNNETRLITGSGDAELRSYEIK----------------------------------EASDKXXXXXXXXXXXXXILRGGKGRVISLYLEEKGQYLACHGVDSTLDLFEIVDEDDXXXXXXXXXXXXXXXXXXMPEAEQIDEDKILVEREVTDEIKKVQSFRMSQKLRSAAISYNNTKEEIKVLSMFINNSFGYYKIDLSALPTKCQLQ-SLISNMGHRSDVRTVGFNSDATLIMTASGESVKIWNRSTQKCIRTMDSDYCLCSMFVPGERHVIVGTKTGKLQLFDISSGILLEAVDAHEEAVWSIALSPDKNGFVSGSADHEVKFWEFDLIIDEEYSSMGKRLSISHTQTLKMTEEVLALKYSPDGRFLAVSLLDSTVKVFFADTLKFFLSLYGHKFPVLCMDISLDSTLLITGSADKNIKIWGLDFGDCHKSIFAHDD 1866
            M + K Y RY +   FGV+GS + N++ +         + E        A E V IWD+R+GEKI  L+G + EVT +  S     +AVGY +G+I+++ L +   +V F+GH++AI+ L +++ G +L SGS DTDIIVWD++ E+GLYRLKGHK  IT  +F+   N++++S KD +VK+WDLD QHCF T+VGH+TEVW L LL+ E RLITG+ D+ELR ++I                                   E  +     +LSC   GSI+R G+ RV++L +++ G+ LACHG DS L+LF I+ + +IQK + K+ KK  KK K      + ++ ++ VE  + DEI++V + + S K++S  +  ++   E+K + +  NN    Y ++ S LPT   ++ S I+  GHRSDVRT+ F+SD   +++A+ +S+KIWNRST +CIRTM  +Y LCS FVPG+R V++GTKTGKLQL+D++SG LLE +DAH+ A+WS++LSPD+ GFV+G AD  VKFW+F+L+ DE  +S  KRLS+  T+TL++ E+VL + YSP+ + LAVSLLD TVK+F+ DTLKFFLSLYGHK PV+CMDIS D  L+ TGSAD+N+KIWGLDFGDCHKS+FAHDD
Sbjct:    1 MGLTKQYLRYVASAVFGVIGSQKGNIVFVTL-------RGEKGRYVAVPACEHVFIWDLRKGEKILILQGLKQEVTCLCPSPDGLHLAVGYEDGSIRIFSLLSGEGNVTFNGHKAAITTLKYDQLGGRLASGSKDTDIIVWDVINESGLYRLKGHKDAITQALFLREKNLLVTSGKDTMVKWWDLDTQHCFKTMVGHRTEVWGLVLLSEEKRLITGASDSELRVWDIAYLQEIEDPEEPDPKKIKGSSPGIQDTLEAEDGAFETDEAPEDRILSCRKAGSIMREGRDRVVNLAVDKTGRILACHGTDSVLELFCILSKKEIQKKMDKKMKKARKKAKLHSSKGEEEDPEVNVEMSLQDEIQRVTNIKTSAKIKSFDL-IHSPHGELKAVFLLQNNLVELYSLNPS-LPTPQPVRTSRITIGGHRSDVRTLSFSSDNIAVLSAAADSIKIWNRSTLQCIRTMTCEYALCSFFVPGDRQVVIGTKTGKLQLYDLASGNLLETIDAHDGALWSMSLSPDQRGFVTGGADKSVKFWDFELVKDE--NSTQKRLSVKQTRTLQLDEDVLCVSYSPNQKLLAVSLLDCTVKIFYVDTLKFFLSLYGHKLPVICMDISHDGALIATGSADRNVKIWGLDFGDCHKSLFAHDD 634

The following BLAST results are available for this feature:

BLAST of TCONS_00008689 vs. Swiss-Prot (Human)

BLAST of TCONS_00008689 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
WDR3	0.000e+0	46.98	WD repeat-containing protein 3 OS=Homo sapiens GN=...	[more]

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TCONS_00008689 (transcript) - C. hemisphaerica