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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008757 ID=TCONS_00008757|Name=TCONS_00008757|organism=Clytia hemisphaerica|type=transcript|length=2431bp
attttaaataataaaaaaaaagaaacaatattATGAAATCCAGAATCTGG
TTTATGCTTTTTGGACTTGCATCTACTGTCGCCCTCTTGGTGAACAAGTA
TGTCCTCTGGAAATTGAAATTCACTTATCCAACAGTCTATCAAAGCTGGC
AAATGTCTTTCGCATCTGTGATGTTCTTCTCGGCTCACATGTTTGATGGA
AATATCAAAAGAATTATTAACAGGTTTCCCATTGCGTCGACATAAATTAC
CTACGGATCCTTTCTTCGACGATGGAAACCAAATATTTAGTTTCCATGAA
AAGACTGTGAACTCTGATATTGATTTCTTGGTAGATTCCATCTCAGCTGT
TCATATTGAAGAGTTTGGATGTTCTGTTAAGGGTTGTCGGGAGACTTTTA
CAGATCCAATGCAATATAATCGACATTATGATATGCTTCATCGATACAGC
TGTGAAACTTGTCACCGTAATTTCTCATCCAATCATTTGCTATCACTGCA
TATAAGTGAAAGTCACGATGCTTTCTTTAAAGCACAAAGAGATAAAGGCA
TTGCTGTTTTTCATTGTCTGATCGAATCTTGTGGAAGATCTTTTAAAGCT
GTTGAAACGAGGAGACGACATTTAGTTGAAAAGCATAAATATCCACCTGA
CTTTCGTTTCAATATGGCTAGAAGACCACACCAGAAATATCAGAAGAATA
AGAAATCGAACAATACAAATTCTTCCAACGGGAATGTTCTAATTGAGGCT
GAATCTGATGTAACAATGGAAATGGAATATGAATCTAAAAAAACGAAGAC
AAAACCTAAAACCCAACAGCAAGATTCTTCTGGGAAAGCAACTGATATCC
AAATGGTCGATCATGCAATTGGTATGTGTGTTGAATCTGGAGAAATCGAC
ATTGGAAATCGACATTCGGATTCCACTGGTGAGGGAAGTAacacacaaaa
taaaaaaccgaaacctaaaaataaaaacagaaaacagaaagggaAAGGAC
ATAAAAAACTCcctaaagatgaaaaaataaccatAGATTTTCCTGCTGTC
GAGGATAAAGTCACTACCTTGTCAAATGAAAAGCCAAAAGAATTAAAGAC
AGCACATAGAATTGACGACACCTCAAGTAAAGAACCATCAAGTAATCTAC
CAATGGATAAAGACGTTGATTCAGTGCCTTGTAAGCAAGAATTGAAAGAG
GCAGGAACTACTAGTTTCACTATGAACACAAAAATGGTTCCTCGCTCAGT
ATCTTTTGGTAGATACCGGATGACCACTAAAGGATTAACGAAGTGATTCT
TTAGAATCCCAATCAGTAGCGTGGTAGCTTGGCAAACACCGGGGAGAAAA
ATGACGTGctcgaagcgagcgcgaaaatatTTCGACATTTCACCATTTTC
TAGGGTTAGAAACTGCCATTTGTGAGGTAAAAAAGGGAAAGGGGCGCTGA
AATCAGTGTTTTGAAGAGCCTTTTTACGCCCCTTATTTTCTCCCCCCAAC
CTGTCACCACGCTAGTGATCCCAATAAAATTATTTCAGAAATAAGTGtta
aatagaaaaatagaaaaattacttATTCTgtatttgttactttttttaga
atttattttgtgGTAAATATAATgatatgattttttaaaatctatttaCG
TTTTCACCTGCAACTACTGGCCTAGAAATGCTGAAATAAtactttttcag
tattttaaCTCTaggagttttttttaaagagtcgATCTTTCGACAATCCA
AGTCAATTCAATTATGAGAATAACAATGGAATCTGTTGTATTTGTAGATT
TTTACAATCGGTTTTTAATTGAACTACTGTGGAccatttttcattctttg
agtCATTCTTCCATTTAGATCTCAATCATATAAAAATATGTTGCTTTCAA
TCATCTCAAATTCTTTATCTCGTTTAGTTGAAAATGAACAGATTCCATCA
TCAAGAGGTCGCTGCTGTACCATCATCATCACCATCAGAGTTGTCAGCAA
CAACAATCAAAGGCGTCATTTCAATTCCACCATTTTGAACTGGTCTCATA
TCACCATTGCTGCCTAAATTCACTTTACTTCCTTTCACATTTTCATTATC
ATCGACAGGTAGCTCCTGGCTTCCTTTTATCACACCATCACTACTTTTGG
CGCTTATACTATGATAGCTGTGCCGTACACTAGACGGTGTTTGTCTTCCT
GAAATATATGACGTCATTTGAGGAATTCCGTCACCggagatgacgtcatc
actagGATGTCGTTGGTTGAGATCGTAAAGTCGTTTGTTGCCACGGATAC
TGTCGTGATGTCGCTCCCCGTCGTCCTCGAAATCGTCATCGGTATAAACA
TCAATACATGTCGACTCCTGTGAAAAGAAAAGTAAGATTGTATGTGTTAT
ATTGTCACACATTTACCACTCGACTTTAAAG Run BLAST on NCBI protein sequence of TCONS_00008757-protein >TCONS_00008757-protein ID=TCONS_00008757-protein|Name=TCONS_00008757-protein|organism=Clytia hemisphaerica|type=polypeptide|length=366bp
MEISKELLTGFPLRRHKLPTDPFFDDGNQIFSFHEKTVNSDIDFLVDSIS
AVHIEEFGCSVKGCRETFTDPMQYNRHYDMLHRYSCETCHRNFSSNHLLS
LHISESHDAFFKAQRDKGIAVFHCLIESCGRSFKAVETRRRHLVEKHKYP
PDFRFNMARRPHQKYQKNKKSNNTNSSNGNVLIEAESDVTMEMEYESKKT
KTKPKTQQQDSSGKATDIQMVDHAIGMCVESGEIDIGNRHSDSTGEGSNT
QNKKPKPKNKNRKQKGKGHKKLPKDEKITIDFPAVEDKVTTLSNEKPKEL
KTAHRIDDTSSKEPSSNLPMDKDVDSVPCKQELKEAGTTSFTMNTKMVPR
SVSFGRYRMTTKGLTK Run BLAST on NCBI transcript from alignment at sc0000087:98030..102491- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008757 ID=TCONS_00008757|Name=TCONS_00008757|organism=Clytia hemisphaerica|type=transcript|length=4462bp|location=Sequence derived from alignment at sc0000087:98030..102491- (Clytia hemisphaerica)
ATTTTAAATAATAAAAAAAAAGAAACAATATTATGAAATCCAGAATCTGG
TTTATGCTTTTTGGACTTGCATCTACTGTCGCCCTCTTGGTGAACAAGTA
TGTCCTCTGGAAATTGAAATTCACTTATCCAACAGTCTATCAAAGCTGGC
AAATGTCTTTCGCATCTGTGATGTTCTTCTCGGCTCACATGTTTGGTAAA
ATGCCTTCCAAAGCTTTAAATAGTGGAATTATTTATCCCTGGTTTCCAGC
CATACTTCTTTTCTCTACCAGTATTTATAGTGGTTCAGTAAGTCTATCAC
GGCTGCCTATCCCTGTTTTTTTATTTTTGCAACAAGGGGTTTTACAAAGC
ATAATAGTATTGATGAAATTTCAACAACAAAATGGACCTGAAAAGTTGGT
ATCCCTTTTAATGAATTCAAAGAAAGGTTTATTAATGATAGTTAATTGTT
TTTGTATTGTTGGCATAATTTTTCTAATGAAAACTGAACTGGTATTCAAT
TTTAAGTGGATGTTGATACACTGTATAGCAAGTTGCAGTTATTCGGTGTT
TGCCATCAGACATCAACATTTAGAACTTCAAGAATCGGATAAACTTCTGA
TCAACTCTATATTCAGCATAATAGTGTTGTTAACAGTTGGCATGACTACT
GGGGAAACGAGCGTCGTCTTTAAATTTCCGTTTTTATATCACCGTATATT
TTTGTTGGCTTGTCTTTGTAGTGGAGTATTTGGTGCACTTCTTATGGTCA
GTTATTCTAAGCTATGTAGCGAACTCAAGATCGAAAAAGTACGATTTGGG
AATACTATAATCATGTTATGGGTGTCCGGTATATCCTTTTTTGTTTTTGA
GAATGAATTGACTGCTCAATTGACATTCTTGGCTTTCTTTGGACTGTGCT
CTACTTGTTACTTGTGTTATTTGATTCAAAATGAATTGCAGCAACAATCT
ACACCTATTCCTATAAAGGAAATTGTTATATGATGGTGGTTTTGTAATTA
TTTCTTTAAATATTAGTTTTTCTATTCAACCCTATTATAGTTTTGCCTAC
TAAAAGAGCCTCGAATTCAAATTTTGACTAGTTTTTTGACTAGTTTTGCT
CTTCTATCTTTGTAGGTATCCAGTAACTTAGTTTACTATTAAAATTCTTA
TCTTTAAAACTAGATCAGCTATATTGATGGAATTTTCAGGGAATGCTCCA
AATAGGTTATTGGTTGAGTACACCTGTATAGTTTAAAGAGGGGACTTTAA
CGAGTATAATCTAGCAAAAAAAAATCTACATCCAATTTCAATTTAAGAGG
CTTTTTTGGCACACCCTGGTAATCTATAATTATTAGCTGTAGCTATAAAT
ATTATAAGGTAGTTGGTTTTATACAACCATTGCCCTGGAAAGTTTAAAAC
AAAAACTGAAACTTTGATTGAATATTTTTGTTGTTTTTCCTACGCCAGGA
TTATGGAACTTTTTTAGAAATAGCATTCAACACAACTTGTATTAATATCA
TCAAGATAGTGTATTTATTTTTGGAAATTATTTATTATTTATTAAATCCA
TTTTTCAGATCATTTTTCTTCTAGTAGGGAGAATTCTGTTTCACTAGCTA
CCTGGGGAAGGGGCACTGGATTTAAGAACGATCGTATGCGCGACTCAAAA
TTATTCCTTTAAAACGGACCCACTATGCCTCGTAACAAAGTGAAATTTTT
CAAAGATCATTTACTATGACATAAAAATTCGTTCATTTTCCAGCTTTTTT
ACTTGAGTTTAGACCCCTTTTCAGAGTTTTAGAACTATTCCTTACCATTA
TACCAAATTTTTCATTTGTTTTAAAACGCAATTAAAATAATGGTTTTCGT
CTAAACAGCCTACATCACTTTATGCAGCTTAAAAATAGCCTGAATCATGG
TCAGCATGTTTCACCAGGGTCAACGCCATGGTCTGGAAACAGGAGGGGCA
GAAAATATAATGAATACTTAGGTGCAACCATCGCTTTTGAAAGTATGAAT
TGTAATATCGCAAAAAAACTTTCTTTAAAAAAATGAGGTGGCTTTGACCC
CCATGGGTCCCGCCAAAAGTTGGTTTGTTTGGTGTCTTTTTTTGAACTAT
TTTAAGTCTATCCACGAAAATGTCAGCTTGTTATAATGAGAACTAATATA
AGTATTTCCATCAATTTGCGTTGTTTTTGTTTACAGATTTTGACTTAACA
TACTTTTCCTTTCTTCTCGTTTACAGATGGAAATATCAAAAGAATTATTA
ACAGGTTTCCCATTGCGTCGACATAAATTACCTACGGATCCTTTCTTCGA
CGATGGAAACCAAATATTTAGTTTCCATGAAAAGACTGTGAACTCTGATA
TTGATTTCTTGGTAGATTCCATCTCAGCTGTTCATATTGAAGAGTTTGGA
TGTTCTGTTAAGGGTTGTCGGGAGACTTTTACAGATCCAATGCAATATAA
TCGACATTATGATATGCTTCATCGATACAGCTGTGAAACTTGTCACCGTA
ATTTCTCATCCAATCATTTGCTATCACTGCATATAAGTGAAAGTCACGAT
GCTTTCTTTAAAGCACAAAGAGATAAAGGCATTGCTGTTTTTCATTGTCT
GATCGAATCTTGTGGAAGATCTTTTAAAGCTGTTGAAACGAGGAGACGAC
ATTTAGTTGAAAAGCATAAATATCCACCTGACTTTCGTTTCAATATGGCT
AGAAGACCACACCAGAAATATCAGAAGAATAAGAAATCGAACAATACAAA
TTCTTCCAACGGGAATGTTCTAATTGAGGCTGAATCTGATGTAACAATGG
AAATGGAATATGAATCTAAAAAAACGAAGACAAAACCTAAAACCCAACAG
CAAGATTCTTCTGGGAAAGCAACTGATATCCAAATGGTCGATCATGCAAT
TGGTATGTGTGTTGAATCTGGAGAAATCGACATTGGAAATCGACATTCGG
ATTCCACTGGTGAGGGAAGTAACACACAAAATAAAAAACCGAAACCTAAA
AATAAAAACAGAAAACAGAAAGGGAAAGGACATAAAAAACTCCCTAAAGA
TGAAAAAATAACCATAGATTTTCCTGCTGTCGAGGATAAAGTCACTACCT
TGTCAAATGAAAAGCCAAAAGAATTAAAGACAGCACATAGAATTGACGAC
ACCTCAAGTAAAGAACCATCAAGTAATCTACCAATGGATAAAGACGTTGA
TTCAGTGCCTTGTAAGCAAGAATTGAAAGAGGCAGGAACTACTAGTTTCA
CTATGAACACAAAAATGGTTCCTCGCTCAGTATCTTTTGGTAGATACCGG
ATGACCACTAAAGGATTAACGAAGTGATTCTTTAGAATCCCAATCAGTAG
CGTGGTAGCTTGGCAAACACCGGGGAGAAAAATGACGTGCTCGAAGCGAG
CGCGAAAATATTTCGACATTTCACCATTTTCTAGGGTTAGAAACTGCCAT
TTGTGAGGTAAAAAAGGGAAAGGGGCGCTGAAATCAGTGTTTTGAAGAGC
CTTTTTACGCCCCTTATTTTCTCCCCCCAACCTGTCACCACGCTAGTGAT
CCCAATAAAATTATTTCAGAAATAAGTGTTAAATAGAAAAATAGAAAAAT
TACTTATTCTGTATTTGTTACTTTTTTTAGAATTTATTTTGTGGTAAATA
TAATGATATGATTTTTTAAAATCTATTTACGTTTTCACCTGCAACTACTG
GCCTAGAAATGCTGAAATAATACTTTTTCAGTATTTTAACTCTAGGAGTT
TTTTTTAAAGAGTCGATCTTTCGACAATCCAAGTCAATTCAATTATGAGA
ATAACAATGGAATCTGTTGTATTTGTAGATTTTTACAATCGGTTTTTAAT
TGAACTACTGTGGACCATTTTTCATTCTTTGAGTCATTCTTCCATTTAGA
TCTCAATCATATAAAAATATGTTGCTTTCAATCATCTCAAATTCTTTATC
TCGTTTAGTTGAAAATGAACAGATTCCATCATCAAGAGGTCGCTGCTGTA
CCATCATCATCACCATCAGAGTTGTCAGCAACAACAATCAAAGGCGTCAT
TTCAATTCCACCATTTTGAACTGGTCTCATATCACCATTGCTGCCTAAAT
TCACTTTACTTCCTTTCACATTTTCATTATCATCGACAGGTAGCTCCTGG
CTTCCTTTTATCACACCATCACTACTTTTGGCGCTTATACTATGATAGCT
GTGCCGTACACTAGACGGTGTTTGTCTTCCTGAAATATATGACGTCATTT
GAGGAATTCCGTCACCGGAGATGACGTCATCACTAGGATGTCGTTGGTTG
AGATCGTAAAGTCGTTTGTTGCCACGGATACTGTCGTGATGTCGCTCCCC
GTCGTCCTCGAAATCGTCATCGGTATAAACATCAATACATGTCGACTCCT
GTGAAAAGAAAAGTAAGATTGTATGTGTTATATTGTCACACATTTACCAC
TCGACTTTAAAG Coding sequence (CDS) from alignment at sc0000087:98030..102491- >TCONS_00008757 ID=TCONS_00008757|Name=TCONS_00008757|organism=Clytia hemisphaerica|type=CDS|length=1101bp|location=Sequence derived from alignment at sc0000087:98030..102491- (Clytia hemisphaerica)
ATGGAAATATCAAAAGAATTATTAACAGGTTTCCCATTGCGTCGACATAA
ATTACCTACGGATCCTTTCTTCGACGATGGAAACCAAATATTTAGTTTCC
ATGAAAAGACTGTGAACTCTGATATTGATTTCTTGGTAGATTCCATCTCA
GCTGTTCATATTGAAGAGTTTGGATGTTCTGTTAAGGGTTGTCGGGAGAC
TTTTACAGATCCAATGCAATATAATCGACATTATGATATGCTTCATCGAT
ACAGCTGTGAAACTTGTCACCGTAATTTCTCATCCAATCATTTGCTATCA
CTGCATATAAGTGAAAGTCACGATGCTTTCTTTAAAGCACAAAGAGATAA
AGGCATTGCTGTTTTTCATTGTCTGATCGAATCTTGTGGAAGATCTTTTA
AAGCTGTTGAAACGAGGAGACGACATTTAGTTGAAAAGCATAAATATCCA
CCTGACTTTCGTTTCAATATGGCTAGAAGACCACACCAGAAATATCAGAA
GAATAAGAAATCGAACAATACAAATTCTTCCAACGGGAATGTTCTAATTG
AGGCTGAATCTGATGTAACAATGGAAATGGAATATGAATCTAAAAAAACG
AAGACAAAACCTAAAACCCAACAGCAAGATTCTTCTGGGAAAGCAACTGA
TATCCAAATGGTCGATCATGCAATTGGTATGTGTGTTGAATCTGGAGAAA
TCGACATTGGAAATCGACATTCGGATTCCACTGGTGAGGGAAGTAACACA
CAAAATAAAAAACCGAAACCTAAAAATAAAAACAGAAAACAGAAAGGGAA
AGGACATAAAAAACTCCCTAAAGATGAAAAAATAACCATAGATTTTCCTG
CTGTCGAGGATAAAGTCACTACCTTGTCAAATGAAAAGCCAAAAGAATTA
AAGACAGCACATAGAATTGACGACACCTCAAGTAAAGAACCATCAAGTAA
TCTACCAATGGATAAAGACGTTGATTCAGTGCCTTGTAAGCAAGAATTGA
AAGAGGCAGGAACTACTAGTTTCACTATGAACACAAAAATGGTTCCTCGC
TCAGTATCTTTTGGTAGATACCGGATGACCACTAAAGGATTAACGAAGTG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008757-exon-sc0000087-1575043694:102297..102491 | TCONS_00008757-exon-sc0000087-1575043694:102297..102491 | Clytia hemisphaerica | exon |
| TCONS_00008757-exon-sc0000087-1575043694:98030..100265 | TCONS_00008757-exon-sc0000087-1575043694:98030..100265 | Clytia hemisphaerica | exon |
| TCONS_00008757-exon-sc0000087-1510915933:102297..102491 | TCONS_00008757-exon-sc0000087-1510915933:102297..102491 | Clytia hemisphaerica | exon |
| TCONS_00008757-exon-sc0000087-1510915933:98030..100265 | TCONS_00008757-exon-sc0000087-1510915933:98030..100265 | Clytia hemisphaerica | exon |
| TCONS_00008757-exon-sc0000087-1491911889:102297..102491 | TCONS_00008757-exon-sc0000087-1491911889:102297..102491 | Clytia hemisphaerica | exon |
| TCONS_00008757-exon-sc0000087-1491911889:98030..100265 | TCONS_00008757-exon-sc0000087-1491911889:98030..100265 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000087 | supercontig | sc0000087:98030..102491 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
BLAST of TCONS_00008757 vs. Swiss-Prot (Human)
Match: ZN511 (Zinc finger protein 511 OS=Homo sapiens GN=ZNF511 PE=1 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 5.369e-19 Identity = 48/138 (34.78%), Postives = 67/138 (48.55%), Query Frame = 1
Query: 262 FFDDGNQIFSFHEKTVNSDIDFLVDSISAVHIEEFGCSVKGCRETFTDPMQYNRHYDMLHRYSCETCHRNFSSNHLLSLHISESHDAFFKAQRDKGIAVFHCLIESCGRSFKAVETRRRHLVEKHKYPPDFRFNMARR 675
FF+DG+ + + V I + D + F C V GC + F Y HY LH C C R F S HLL HI E HD+ F+ ++ ++ CL+E C FK R+ H+V H YP DFRF+ ++
Sbjct: 49 FFEDGDVQRHLYLQDV---IMQVADVPEKPRVPAFACQVAGCCQVFDALDDYEHHYHTLHGNVCSFCKRAFPSGHLLDAHILEWHDSLFQILSERQ-DMYQCLVEGCTEKFKTSRDRKDHMVRMHLYPADFRFDKPKK 182
The following BLAST results are available for this feature:
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