TCONS_00008944 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008944
Unique NameTCONS_00008944
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length567

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008944 ID=TCONS_00008944|Name=TCONS_00008944|organism=Clytia hemisphaerica|type=transcript|length=567bp
AGCAACTTAATCATACTTCAAAACCACAACCGCGAGATATGCAAGATGGC
GGATTTGTTCACAGAAATTTTGGTTAAGAATCATTACACATTGGTATGAG
TGTTGTCATTAAAAATCTGCAGAAGAATGCTGTGCTAAACATATGGTTGG
TTCGAAAAGACATTCATTTACTTCGAAGCATAATGGGACTTTACTCGTTT
GATGTTGGTGTTATTTTCCTATCCAGAAGAAGGATGAAGCAATTAAATTA
TAAATATCGTAGTAAAGAGGAAAGCACAGACATTTTATCCTTCCCTTTCC
ATACTGCTTTGGTAGATAATGGAGGCAATATGAACACTGAGGAAAAAAAT
CTTGgtgatatttttctttgtcctgaatcaataaaatcaaaatattcaat
agATGATGATAAATTACGACAAGTGTTAGTACCCCTTATAGCACATGGAC
TTTGTCATTTGTGTGGATATGTTCATGAGACGGACGCTCAATGGCATaga
atgaatgaaaaagaaagtgaaatatTACGTCTCTTTTCTGAGAAaacgaa
aagaaattttgcaccNN
Run BLAST on NCBI

protein sequence of TCONS_00008944-protein

>TCONS_00008944-protein ID=TCONS_00008944-protein|Name=TCONS_00008944-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MSVVIKNLQKNAVLNIWLVRKDIHLLRSIMGLYSFDVGVIFLSRRRMKQL
NYKYRSKEESTDILSFPFHTALVDNGGNMNTEEKNLGDIFLCPESIKSKY
SIDDDKLRQVLVPLIAHGLCHLCGYVHETDAQWHRMNEKESEILRLFSEK
TKRNFAX
Run BLAST on NCBI

transcript from alignment at sc0000089:16631..37681+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008944 ID=TCONS_00008944|Name=TCONS_00008944|organism=Clytia hemisphaerica|type=transcript|length=21051bp|location=Sequence derived from alignment at sc0000089:16631..37681+ (Clytia hemisphaerica)
AGCAACTTAATCATACTTCAAAACCACAACCGCGAGATATGCAAGATGGC
GGATTTGTTCACAGAAATTTTGGGTAAGAAAGTCTGCCAAATCTTTACAG
GTGCCCATACCTTACCGTGCTTTAACCTTACCCTATAGCAAATTATACAA
TGTATAAATATTAGAAGGAGAGCTTATTAGAAGATTGCAAACGtcaaacc
aaatattttaattgattttctgtgggttttttttaagcagttaggaacat
ttggcgagttcctgtacgcggccgcaatcaaaaaaatcataaccacactc
ataaaaaaaatgtgtttgtgtctttttttatCGTTTATTGCATAGATGAT
ATAGCAAACATTgtaagtataagcagactgtgcctttaattggctgtaaa
aaaattatgcgtcggtagaaatttcttcaactttcaacaatgatagaaca
gacctatttggaaaaaattaaccagcgcatttttcatctttctacttctt
catcttccatgaagctctcaaagtcaaatagaattaagcacataagatat
tcttataattgtgaaatgtcATTCGCGCTTTCGCTagggtggagtgcatg
acgtaactcgcgcggcaacaaactcgccttctgttccagacccccgcgct
cgataggatcgatcatcggaacggctcgatgacggatcgatatgtgatcg
atggattacttatcgatccggataggagatNNNNNNNNNNNNNNNNNNNN
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TAGGAGATcaatagaggatcgatactcaagatttttttaagcttatgatt
agttatcgatctatcatcgatctatcatcgatctatcatcgatctttaaT
CGATCTTATCGAGCCTATCgactctttctaaaaatcgagctctaatatta
atcgatctttctcgctatcgattacctatcgacagtCGAGTACTGAGCGA
TCTTTTCAAGTCATCtctatacaaaaaagaaaagcaaaaagaccTATCGA
ATGAGAACATCATAATGTTCCACCGCAGAGTAACTTNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCGTataaattgaaact
tgaaaatgttattaacaCTTAGTTAATTGGCATAATTAGTGAGATTAGAT
ataaattgatcatttttccgatttcatttttagggcctgCCTTCTGTGGA
ATCAAGATGGAGCAAGAAACgaagactttttataagaacaaaaaaactca
tcaagcatttgctttgcgtttgtttttttttaccaaagctgTGAAGANNN
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NNNNNNNNNNNNNNNNtagacgatgttatcgtccgttacagtgatagtaa
aggcgggaaaaaatggcggtatggcgttatggcagtataaggaaaaaaat
cggcgggagagtttcgaagaaacgactggcaactctaccgactgtaaact
cttttcgacaaaaaaacccgtttgcgaattttcttcggctttgggctttt
ttcttagatagtgattcgttttagactataacatagtctaatTAAAATGG
TATAAAGGATAACGATAAAACCAGGTGAAACATTCGAGAACGAAATACCT
TTTCCTAATTAATGTTGTATGTGCAATATGACGATGCGTTGACTTCTCGA
TCCGGGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNTCCCCTATTGATCGTGATATAAAGAGGGCCT
TAGATAATATCCTTGAACTCATTCGCATGTCAATGACCTTCTTAAAGTAA
CTCTCACAGGAATCTGCAAAGAATCTGCACATCCTAATAGACGTAATAAA
AAACTTACCATTGTTGAAAGaataacttttcgtaatcactTGGGAATATA
ATTACTGCTTGCATCGTGTTTACGTCATATTTCTCATCGCTTCACTTTTT
CTACCGTGTAGGAGTGCCAAACATGAGATTTCTataaggaaatttgaaaa
acttcagatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGGGGAAACTTTCAACATctgctggaaggtttagattacggaa
tttcgcctgagcCCTAGCTCCGAACTTAAAAAAGCGGAGGGGGCCGGCTT
AAAAATGACCAATatggtactctcgggtacctaatataaTAAGCGTCCCC
AACCCGCTaataattggtcagcctaagctgagcattcaaataggtaaaat
tcagTTCTTcttccatcataagacggcaaaaaaaaaatccgatttcccga
tctcactttgatttctaaactttctttcgatcgggttaactttttgggta
cttttagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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gacgtgttttgatgataaggcgaatcgcaaaaaattgtttggttcccgtc
atttctactttaaaaagtgggggtcgttcggtcgtttgaaaatatttttc
tgttaagaagcagctacatcttgttgaaaggaaatacgtgtggactgatc
cgaattaaaaaattgagaaactgtggataaactggttttcggtttattct
ccattagcatgcggctcgttacttcgatttgaaaacttgtaaacacagag
cgtgcagaggtcgacagtggaaatccagcaaagcagcggaaaagcttttc
gactctccaactctaccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNTTGTAGCTTGTtggtttaaagtgttattggagtttta
tcaagtaaaacaaaaagtacagtttctatgtatatttgatggatatcttt
attttggtactgacgtttttgcaattttcttatttttttctagtataaat
aacactttggtcagataatGGATATTGTCTCtgattgtctacatccaaca
gaaaaaatgtatcataactgattggaatgaaattaacaaaaagtttaatt
acactatgtttctcttttattttatagtaatgaactatagcttaattgtt
tgatgtcatagaaacagtgctacaatgctaaagagaagtatacattgagc
ttctcgtggggggaggggggggtggAGGAGCTCTCaagcttgttttaaat
aattttaaatcaagttatcaaatgtttcacagtttgtacattattcaaca
tttttagtctactctgtttcagtacatctcttacatctgttaacccactt
attaaagctatctagctaagctctattggctgaccttccagcctcggctg
gtttattaattttataatcgatgcataatcgatttataatcgatgcatac
tcgattaacgatcgatgacgaatcgagttacgatcgatgacgaatcgatt
aacgatcgatgacgaatcgattaacgatcgatgacgaatcgattaacgat
cgatgacgaatcgattaacgatcgatgacgaatcgattaacaatcgatga
aGAATCGAGCAATGATCGATGatgaatcgatatactcgattgaaattcta
gctcgataatggatcaacgaaggatcgatactcaagactttttaatggct
gaatcttccatcgatctcctatccggatcgataagtaatccatcgatcac
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NNNNNNttgttttcgatggaaaatggtaagaaacttaagtttacaagtgt
cattcagtttttgctggctgatagaatggcaggatcctggatggtttccc
taactgttaAGTCCTTGATTCTAGACATGTATTCCATGCATGGCGGCACT
TCCCTTCCAGTCCCGGTGTTCTGCCGGAGCAAGATTTATCCGCAatatag
agtcccctgcccagttggcgtccaaaattttttgattcaaatttttcact
tctcaagtgagttacggcatgtctAAGGTACCGTAattaagttggtctaa
tgtcgacatccgtcttttaattttgacatccttctttaaagataggaata
ataagagggtcgaaatcactgatagactaaagatttttcctctcatcgcg
ctaatcaaagtcaatcagcgattccgaccttacTCAGAGTTTCTGTTGTT
TCTAACTTTAAacaagggtgtcgaaattagaagacggatgtcgacgacat
tagaccaacttacggtaaaagtgaaccagttccactcactttcaaaatgt
caaacatagctgcTGGAAAGAAGCGCCATATGGCTACTATAGGGTTTATA
GTCACGTATAAAGTAGTACTttattagggagataataatTACTACATAAT
TACTATATATCCCGTACGTTCTAGTCACTAGTGTTCTATACATTCTATGC
GTTCTAATGTTCTACATGTTCTANTCcgtacgttctagtgttctatacat
TCTATGCGTTCTAATGTTCTACATGTTCTATACGTTCtgtgcgttctagt
gttctatacgttctactGTTCTATACATTCTCTAGTGTCCTATACGTttt
agtgttctatacgttatCTAGTGtcctatacgttctagtgttctatacgt
tctgtGCGTTCTAGTGCTCTATACGTTCTAGTATTCTATATGTTCTGTGC
ATTCTAGTATTCTATACGTTCTAtatgttctagtgttctatacgttctgt
GCGTTCTAGTGCTCTATACGTTCTAGTATTCTATATGTTCTGTGCATTCT
AGTATTCTATACGTTCTAtatgttctagtgttctatacgttctagtgttc
tatacgttctatacgttctagtgttctggtGTTCTataggccaggcccaa
ttgattgtttTGTGTGTTCGTGTCCTGTGGATGTTGTTTATAGAAGAATC
AAAACAGCCAGTCAAAAAAGAACCGCGAGATAGTTATCATGTGAAAagga
ggtaattttttttttccgaatcaaagtgaaacactttttctagaAAATTT
AGAGTCGGTCGGGGGACACGAACCAAgctatcaattgggcctggccaaTA
CGTTCTataccaggggatgtcaatcgaaaaattcgattgtcgaaacaatc
gaagtcaatcgaagtcgATCGAAGTGATCAGTCAaatcaatcgaagtgat
tgtcgaatcgatcgaagtcgatcgaagatttaattttttttcctctttat
gaTCGTGGAGATCGACCTTTAGGCTCGAAAGAAAATgtaaatcaaagtca
atcaaagTCCATCGTAGTCTGTCGAAGTCGATCgaagatttacatttttt
ttaaaggtttcatCGACTTCGCTCGATTcgacaatcacttcgattgattT
CGATTGATTTGACCAATCACTTCGATCGACTTTGATCGACTTgcttcgat
tgcttcgattgcTTCAGTCGCTTCTATTGCTTCGATCGCTTCGATTGCTT
CGATCGCTTCAATCgcttcgattgcttcgattgcTTCGATCGCTTCAATC
GTTTCAATTGACATCCTCTGGTCTATACGTAAtgtgcgttctagtgttct
atgcgtcctagtgttctatacgttctagtgttctatacgttctagtgctt
tatacgttctagtgttctatacgttctagtgttctatataTTCTAGTGTT
CTAGTGTTTTATACCTTTAGGCTCGAAAGAAAATATAAATCNTGTTCTAT
ATGTTCTGTGctttctagtgttctatacgttctagtgctttatacgttct
agtgttctatacgttctagtgttctatatattctagtgttctatgttcta
gtgttttatacgttctgtgcgttctagtgttctatgttctagtgttttat
acgttctgtgcgttctagtgttctgtacgttctagtgttctatatgTTCT
GTGctttctagtgttctatacgttctataCATTctttctagtgttctata
cgttttGTGCGTTCTACTGTTCTAcatgttctagtgttctatgcatTCTA
tatgttctagtgttctatacgttctagtgttctatagaACATATAGAAca
tatagaacactagaacgcacaGAACATATAGAACATGTAGAACGTATata
acgtatagaacactaaaacgtatagaacactagaacgtatagaacgcaca
gaacgtatagaacactagaacgcacaGAACGTATAGAACATATAGAACAT
TTATCTGGCACTCAGATGGTGAATTTTCTTCCGACATGCTAAAGCCCTGA
AGGTCAGTAaagttttcaacatctggaaggtttacattacggaattttgc
gagaccacgtcaaaaattttgcagagGGAgttctggtaacccagccctcg
tttttgGGGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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aaaaattgaaaattcaagcttttgtattgagtcaagatattccaaatatc
ttcattttgactgcagacttttatcaaattctttttgtaatggcttgcta
acGCTTCAAGGAAGTTATGAAAAgacatgtttttgaaaaaagaagacatt
gcattgcaaaaaaaacaataaaaacgttttaaaggaaaagcggaagttaa
aattgctgaacgtacctatctttgtaatcaaagcgctgcggaggaaaaat
TCTCCATGGCATttaaataactgttttaggaTAAAAAATGGGActcattt
tcaggctgaaaatgcttgccaaagtataaaaagtaaaaaatgataacttt
aaatgaaagaattaatttcagagcgtagcaccattggatttctcaggtat
tttctgataaatatggtttcactgtctgaacattttttcctccgcagcgc
ttttttagaatttttagacaaaagtgtaAAATATtacctgcatattatat
atggttggaaagctaaaagaaagctctaaattactcaaaaataattaatt
ttatagctcaactacacaaagaacaattgcttgtcaaagttggacctaaa
attgaagattttcatgagcgtaaaataaaaaacaaacaaacccaGAATGG
CTAGTATATCAACGTGATGGGTGTTAGAAAAATTAtgttatgacgtaatg
ttacgtaatgtttatgaAGTCATAATagggccaaattgaaaagtggtcaa
ccaaaacacaaaatcaaaaatcttacaaacaaaataagtaactgtgattt
ttttaaaaataacccttaaattttccaatttcaacttttaaatcaaCTGA
GTCGCACTTTTAGTCTCTGTCATCAGGTGATTATATCGAAACACAACTAG
TGAGGTTTGTCACGGAATGACAAGTGTTAAAATATAATGGaccttctttt
caaaaataaaatgattacTCAAAAATGAAAGTTGTTTTAAAACAAGTACA
TACCCTAGTTAGTTTAATAggtttattggtcagcctaagctgagcattca
aataggtaaaattttccataagacggcaaaaaaaaaatccgatttcccga
tctcactttgatttctaaactatCTTCCGatatcgggttaactttttggg
tacttttagcgtgcgttgtttttacagatcataatgtaatgtggtgtttc
aagatggcggctcaagcgataagtcagatgtgataagtcagtgttgtgcc
aaagtatttccagtgtaaatctgttgcaagcttcaatttctgtcatttat
ttttttaactcggcaaatcaaacacatggttttcatcaaggggattgctt
ttctacatcttttgaaggtttgaagccttttgctcaagtttttgtttatg
ttgaattttctgatactttttattgctgctttttattatagtttttgcaa
taaaaacatatttttcttgtttgcctctaggtgggattgatggtgttata
atgttattggaatttgataNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatcttgttgaaagggaat
tcgtgtggactgatccgaattttaaaattgagaaaccgtggataaactgg
tgttttcggtttactctccattagcatgcggctctctaactcgatttgaa
aacttttaaacacagagcgttcagaggtcgacagtggaaatccagcaaag
cagcggaaaagctttccgactctccagctctacctgctgaccgtaaatca
gatgacgggaaccgaatgatgacatcacatctcctattattggacttgca
aaattatgacaaatggtctttggaatttgatcattcatattaatattaat
atatacagttcttgttgaaattgatcacactatttttcacgcagttccgg
acgcagattgtgtttttctaaccttttctaaccttggcgcacgttttgac
tgaatgatggaatggaataaATGGCAGTTTATATatatatctcttatcag
acttgcagaaagcggactgcagaaagttatgaaaaatggtttctagaatt
taatgaattataccgtcaagttacacaacatgcacacNNNNNNNNNNNNN
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NNNNNNNNNNNggggggagctaaattgttgggggggaccttactttgttg
gggggagctagaaacctggctgaagctatgggcttgttttaaataatttt
aaatcaagttatgaaatgtttcacattttgtacattattcaatattttta
gtctactctttttcagtacatctcttacatctgttaacccacttattaaa
gctatctagctaagctctatcggctgaccttccagcctcggctggtttat
tcatATTGAAATAagtcaaacaacaaaaaagtactgcaagcagaaacttt
tttcaaatatcgaattccttccgtgacaagttcaagacaaaaagtttttt
caccagTTTTGTGCAAGTACACTATTCTTGATATTATTGCAAGTTCTAAC
TAATTGGTACCCcctaacaaaaaatgaaattacattCGAAAGCAACCTCC
TTCATATTCACTTACAAGGTCTCAAATtattgtccttccgtgacactttc
accttgtccttccgtgacggattaaaaatatcttgctatttttagaaatc
ttggacttcaatgggtctaatccattgcaggggagtgtcctacaaggttt
agaaccattgggaaccagctcaaccctgtatggagctcagaataagctta
actaaggctccagtacagcgctgtaagcttacagcgtaagcccagacggc
tctcgaagcctaaaaaccggttttctgccagaactactgttccaagcggg
ttctaaaccctcaaaatcgcttcagcaccatggaaatatgcaaattagag
cctttggaagtagctaactcgcttgtaaggtcgcctttttacgttttttg
cttaaaaaagccttaaaaacgcttaaatagagctttttaagcgtttttaa
gctattttagtaaaaattcgtcggttctgccccctacactggacttcaat
gggtctaatccattgcaggaGAGTGTCCTAcaaggtttagaaccattggg
aaccagctcaaccctgtatggagctcagaataagcttaactaaggctcca
gtacagcgctgtaagcttacagcgtaagcccaggcggctctcgaagccta
aaaaccggttttctggcaaaactactgttcccagccggttctaaaccctc
aaaatcgcttcagcaccatggaaatatgctaattagagtctttggaagta
gctaactcgcttgcaaggtcgcgtttttacgttttttgcttaaaaaagcc
ttaaaaacgcttaaatagagccattgaaattaattttttgactcAGTTCC
TTTTTCAATGACAAGCAGATAGACATAAATTTCTTCTGGtggtattttgg
ttttaaaattctctttaaattcacaggaatctgaatcagcatacttttgt
cttttttaatgtcTTTGCTGCGTTCCTTCCGTGACAGAACCTCCAAAGTT
CAATTATTCAATGAGGAaaaacttttatgaaatttattttggtttGGAAG
TAGTAGTACTATGAAGGCTTTAATTCAGGACTAATACTATTTTCATTGag
tttaccatttttcaaaaatagaccaaaaaaggctctgatttccttccgtg
acagaaacgggacttttcaatttggcccaatacaggtttttgggctataa
cttccTATAGcctcaaattaaatttttctaacacccatcacgttgatcta
catcatatggcgcttctttccagctatgtttgacattttgaaagcgagtg
gaactggttcactttttctttggacatgccgtaactcacttgagttactt
tttacttttttgataaTCCTTTTCCaccaacggttagacaacttttaaca
tgctttTCGTGTTTGTTGGCCCAGCGCTTAGCATACGGGCCTCTCATTAG
CACAGTGCCCCTGTCTGTtagtgtgtgtgtgtgtaacCCATCTTACTAGC
CTTCATACGCGTTTTCAAGCACAGGCTAGTACATATTGTGAAAgatttga
ttggctgaaacATGTCTCTTTAGAACCTGATTGacagaataaaaaacaat
tgcaatcgtctttattggttaaaaacataaaaggagaaaatacaattaac
tatTTAAACTATAAGAATATAACAGATGTAGTACGTTTTAAGCAAAACAA
TGTGATTTACACAGAAATAACCGTAacaaaccttcttctctttaggacaa
gatgttcttttaaaaaagttgtttttacatttctctatcaggccagaaaa
aaaaaagttttgtttccgGAAACAATTTATTtcctttgcagaaaaaaaaa
ctttttatgcGTTTCAAAAGACGAAAATCATAAAGTTTTTGAGCGTAAAA
TATCCTattgtaaaatacaaaatactCCTTCATGCTTTCACTCTCttcct
tttttatcaaaatctctGCGACCAAACGTCTTtgtgaaatataaacaaaa
agtatttttttaaacacaaggaaaataaaattaaaaagaaaggaaaaatc
tATCTCTAATCTGACgtcacaaaaatttaaaaaaatctacttttgtcTTT
TCGTTGTATACCTGTGTATACATGTTATTTTACTCTTTTACACAAAAGAG
GTCGTTTTTTGACGTTTTNTTACTTTCGTCTTTTCGTTGTATACCTGTGT
ATACATGTTATTTTACTCTTTTACAACATTAGGGGTGAAGGGACCcaaca
tagtgtgcagaggggtccagcccccagcatttttcagggggggcTAAGAA
AAATAGCCCCcggctaaattctagaaacatagccAGCCACCTTCACAAgg
caaaaaatcaaagaaattttgcgtGCAAATTCTTGATAGATTAGCAAGCT
AGTTCccagtatttttttaaaaatacagcccccaatcaaacaaaaatggt
ttagcccccctaagctcagggggTGCATTCTATGCCCAATGACACAGATT
TgcgaaaaacttcaaaatgtgatatctcgagtttgaaaaagagTTGAGAG
GTCTGTGAATTTTACGAAGAATACGATGGAAGGGTTTATGAGGCTTCAGT
atgactttgaaatttgactGAATTTTCAGACGTTttcaattgatgacgtc
agcaaaaggAAAAAAgtgatatctcgagattggatagGAGTTAAGAAATG
GCTGACCCCTCATTTGATCGGAAATTTTACATGAAATTAGTTGGGAGGGG
TTAGGGTGGGTATATAAAGATTTTGCAAATTTAATATATTCAAATTGTTA
CCGCAGACAGAGACAGGACGTGAAGGTTGATATTCGCTAAAATATTAGGG
GAAATTTTACTAAGTCACAAAGGTAATTTTACTAAGTTCCACAAAATTAA
AAAGGGCAAAAATATATGTACAAGTCAATGAGTAAAAGATATACTTACTA
AACACGTATAATCCCATGAGCTCTGGTGCGATATAAAAATGTCTTATATG
TTTCCGGGTATCTGGTTCTCAATCTCAAATCAGTTTTCATTAACTCTGAT
TTGTCTATGTAAAATTTGTACCTCACTCTTCTCTCATCAAAGTTCAACTA
ACcgaaaaagcaacaaaaacaaCCACAAAAAATGTGAAAGCGAGAGAAGA
GAAAGTCCCGAGGGACAGAcgcaacaaaacaaagaaaagcaaATGGGAAT
GCGCTTAAATATATAATTACCCTATTATTATAATAAATAATGGCATTTAC
ACAAATTGAGGCATTTTGGGTCTGATGCtgtctgatgacgtcatcaaaaa
ctgaaaaatacaatatcttcagtttgagaaggatttaagaaatggttgac
ccctcattggattgGAAATCATCGAGATAATCTTCTGGGTAAATGATtaa
ttgatttcagtgaagtgaacAATTTATCACCCTTTCGATGTTGTCAtttg
acgtcacaaaacatcaaatttgcaatattttttagttttcaacgatttaa
agtgaaaatcttttgttctttgggcttacaaatcagatctttttaCTCTC
CCCATCATCCAAAGGGCTTCTaatgcgttcagcttatctactcctcaGTG
GGTGCGATGCCGGGTGATGGCTAGTTAAGTTCCTAAAACTCAAAAGAGGG
GGGTGATTCTTGGACCGGAATTTTATACACATAttcatcccctatatcaa
aatataACAGAGGGGACACGTGCAGACTAGTGAAGTGTTTAGACCTAAAC
TATAGATCAAACAAAGCACATTCAAAACTGGAACATAAGCAATTCTACTC
TCTGCAGTTCTCCAATCGTTGTGTTGTTCGCTTCAAGCCAAAATCATGAG
CTTCTACCACTGCATGTAGTTTTTCTTCGCTAAGATAGTAGATGAAACAA
AACACATTTCCAATTCGAAATTTGCTTGCGGACAACAGTATTGTTTTTTC
CTATCACCTTTTAACCATTCAGTGATGAGTGACGtgctttttatttgatt
tttccttCTCATTATGCTATTTGTTTCTGTGCTGGACATTATCATCTCTT
TTTTTAGTTCTATTTTTATCTGACTTTCATAATCaagtaggtccattcag
catgtggCTTGTTTAGTATACTTTGTTTTATCTATAAAACATTTGCCATT
GTGTTTTAGCTCAAGAAACGTTGCTCAAGCATTGAGTTACGTGTTCAGCG
CCATTTTTAGTATTCGTGCAAATAAAGCACATTTGTACTGATTGTCAGCT
GAAGTGGGGGAAGGGGGTGGGttccccctttttcagaaaattaggATTTC
CCAGGTTGATATCAATACTAATTTGGGGGTGGGTctccttttttagaaaa
ttaagattttcaatgttggtattgataccaatttagggggtgggtcccct
ttttttagaaaactagGATTTTCCgtattggtatcaataccaatttaggg
ggttgGGCCCCATTCTTTTTAGAGAATTGGGATTTTCAAGTTGATACCAA
ATTAGGTGTGGTGTTGTCTTCTATTCTACCAGCTTCTACTTTCAAACCTC
GtttattcgaggatttacggtacTTTTTATCTTGGGTCTTTATCTGAACC
TTCTGCATACAATGTGGAATGTGTATTCCCCTACTCaatttgttatgcta
aaatgaGATTTTGAATGTCCTAAAATAAAAGGATATAAAAATTACATTGT
TTTACAGTTAAGAATCATTACACATTGGTATGAGTGTTGTCATTAAAAAT
CTGCAGAAGAATGCTGTGCTAAACATATGGTTGGTTCGAAAAGACATTCA
TTTACTTCGAAGCATAATGGGACTTTACTCGTTTGATGTTGGTGTTATTT
TCCTATCCAGAAGAAGGATGAAGCAATTAAATTATAAATATCGTAGTAAA
GAGGAAAGCACAGACATTTTATCCTTCCCTTTCCATACTGCTTTGGTAGA
TAATGGAGGCAATATGAACACTGAGGAAAAAAATCTTGgtgatatttttc
tttgtcctgaatcaataaaatcaaaatattcaatagATGATGATAAATTA
CGACAAGTGTTAGTACCCCTTATAGCACATGGACTTTGTCATTTGTGTGG
ATATGTTCATGAGACGGACGCTCAATGGCATagaatgaatgaaaaagaaa
gtgaaatatTACGTCTCTTTTCTGAGAAaacgaaaagaaattttgcaccN
N

Coding sequence (CDS) from alignment at sc0000089:16631..37681+

>TCONS_00008944 ID=TCONS_00008944|Name=TCONS_00008944|organism=Clytia hemisphaerica|type=CDS|length=471bp|location=Sequence derived from alignment at sc0000089:16631..37681+ (Clytia hemisphaerica)
ATGAGTGTTGTCATTAAAAATCTGCAGAAGAATGCTGTGCTAAACATATG
GTTGGTTCGAAAAGACATTCATTTACTTCGAAGCATAATGGGACTTTACT
CGTTTGATGTTGGTGTTATTTTCCTATCCAGAAGAAGGATGAAGCAATTA
AATTATAAATATCGTAGTAAAGAGGAAAGCACAGACATTTTATCCTTCCC
TTTCCATACTGCTTTGGTAGATAATGGAGGCAATATGAACACTGAGGAAA
AAAATCTTGgtgatatttttctttgtcctgaatcaataaaatcaaaatat
tcaatagATGATGATAAATTACGACAAGTGTTAGTACCCCTTATAGCACA
TGGACTTTGTCATTTGTGTGGATATGTTCATGAGACGGACGCTCAATGGC
ATagaatgaatgaaaaagaaagtgaaatatTACGTCTCTTTTCTGAGAAa
acgaaaagaaattttgcaccN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005023XLOC_005023Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008944-proteinTCONS_00008944-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008944-exon-sc0000089-1491911889:16631..16703TCONS_00008944-exon-sc0000089-1491911889:16631..16703Clytia hemisphaericaexon
TCONS_00008944-exon-sc0000089-1510915933:16631..16703TCONS_00008944-exon-sc0000089-1510915933:16631..16703Clytia hemisphaericaexon
TCONS_00008944-exon-sc0000089-1575043694:16631..16703TCONS_00008944-exon-sc0000089-1575043694:16631..16703Clytia hemisphaericaexon
TCONS_00008944-exon-sc0000089-1491911889:37188..37681TCONS_00008944-exon-sc0000089-1491911889:37188..37681Clytia hemisphaericaexon
TCONS_00008944-exon-sc0000089-1510915933:37188..37681TCONS_00008944-exon-sc0000089-1510915933:37188..37681Clytia hemisphaericaexon
TCONS_00008944-exon-sc0000089-1575043694:37188..37681TCONS_00008944-exon-sc0000089-1575043694:37188..37681Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:16631..37681 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.296	32.2498	10.6177	4.18083	6.97648	7.83799	5.02701	11.6741	0	3.48619	4.04389	1.23852	0.140966	0	3.99688	0.999501	0.460872	0.037773	1.31628	0	4.24272	8.12831	43.9609	30.6022	1.82577	12.9445	4.54247	6.35308	14.0263	17.0647
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002036YbeY
IPR023091MetalPrtase_cat_dom_prd
Vocabulary: Molecular Function
TermDefinition
GO:0004222metalloendopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006364rRNA processing
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006364 rRNA processing
molecular_function GO:0004222 metalloendopeptidase activity
Blast
[Close]
BLAST of TCONS_00008944 vs. Swiss-Prot (Human)
Match: YBEY (Putative ribonuclease OS=Homo sapiens GN=YBEY PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.310e-27
Identity = 58/161 (36.02%), Postives = 88/161 (54.66%), Query Frame = 3 
Query:   96 MSVVIKNLQKNAVLNIWLVRKDIHLLRSIMGLYSFDVGVIFLSRRRMKQLNYKYRSKEESTDILSFPFHTALVDNGGNMN----TEEKNLGDIFLCPESIKSKYSIDDDKLRQVLVPLIAHGLCHLCGYVHETDAQWHRMNEKESEILRLFSEKTKRNFAP 566
            MS+VI+NLQ+   +    +R  I ++R I+G+  FD+G+I +  + ++ +N  YR +   TD+LSFPFH  L    G        ++ NLGDIFL  E I  +   ++D    VL     HGLCHL G+ H T+A+W +M +KE  +L     +T     P
Sbjct:    1 MSLVIRNLQRVIPIRRAPLRSKIEIVRRILGVQKFDLGIICVDNKNIQHINRIYRDRNVPTDVLSFPFHEHL--KAGEFPQPDFPDDYNLGDIFLGVEYIFHQCKENED-YNDVLTVTATHGLCHLLGFTHGTEAEWQQMFQKEKAVLDELGRRTGTRLQP 158
The following BLAST results are available for this feature:
BLAST of TCONS_00008944 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
YBEY1.310e-2736.02Putative ribonuclease OS=Homo sapiens GN=YBEY PE=1... [more]
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