TCONS_00009998 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00009998
Unique Name	TCONS_00009998
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1285

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000101:505133..512386+
coding sequence from alignment at sc0000101:505133..512386+

transcript sequence

>TCONS_00009998 ID=TCONS_00009998|Name=TCONS_00009998|organism=Clytia hemisphaerica|type=transcript|length=1285bp
CTCAACTCTCGGTGACATTGGTAAGGTATCCATTTTTCTGCTCAAACTTC
CATCATGTCAAACCCTCCCAATGTTAGGGTCTTGTTTCGTCAACGGTATC
GTCTCACCTAGCATCTCGCGTGCGAATAGCGTGACTTTTTGTAGCAATGC
AGATGGTGGTTCAAGTTTGTTATTTGGTCGCTTTACCGGCAACGACTTTA
TTGATATATTTTGCCACCGCAATTCGACCGGAGGAATGACGTTGTTCAAC
ATGAACTCCATCCAGGTGTTGAGTATTGCACGGACTTTCTGTGAAGGAGG
GTGGAGATTAATGACCGCTGATCTCAACGGTGATTCGAACCAAGATTTAG
TATGCTTACGAGCGGACGGAAGTGTCAGCTACTTGTTAAACACAGATGGA
GGAACATTTTTGACAGcGGCCGAGCAAAATATCAATGCATCGTTTACGTG
TAACAAGACCCTAATATTTGGTGACATCAACGGCGATAACAAAGACGATA
TTGTTTGTCAAAATGAAGATGGAATCATCCACTTTGCTTTGACTAACTCA
TCCAATTTAGCAACGGGTTTGTTTACATCACAACAGACATTTCCAACGAG
CTGGTGTAATGGAACAATGGATCAAATTATGAAAGGTGACCTGAATGGAG
ACGGTAAGATTGATCTTTTGTGTCACGCCGAGCGAACTTATTTGAGGAGC
GCGCTCATTTCTTCGGGAGCAAGTTTTGAAGAAGAATTATTTGAGATGGA
GTTGGAAGTGTGTGGCGATGAAAATCAATTTCTATTAGTTCGTGATATCA
ACGGTGACGGATACGCTGATCTGGTCTGTAAATCTTCCGACCTCACTGGT
ACCACTAAAATCATCCATAACAAGCCTGGtgaatattttacagaccagtc
tgtaCGCAATGAGTTCCGTTTTTGTGTAAATGGTGGACCGACAAATTTTT
ATGTGGAAGATGTGAACAGGGATGGCTTTGATGATTTGGTTTGTCAGACC
AGCATCGCAAAAAGATATATCTTCATCAGTCGATGCTACTTTTAAAATCT
AACACTTCTATCAATATAAACATTTGAAAGacttaaaatttcgaaaagta
ATACAGTCCCAAAAATTGGTTTCTCTCTTTGATATGAAGtgaattttaaa
agttgaaCCTTTTGGAAAGGGAATATATAAACTTAAATTGATGGGTTGTT
TATCGATTGGGCCATTACATCAAATGTTACGATTCTGCAGTTACATTGGT
TTCTTTGCTCACTGAGAAGTCATTTTGATCATaat

Run BLAST on NCBI

protein sequence of TCONS_00009998-protein

>TCONS_00009998-protein ID=TCONS_00009998-protein|Name=TCONS_00009998-protein|organism=Clytia hemisphaerica|type=polypeptide|length=347bp
STLGDIGKVSIFLLKLPSCQTLPMLGSCFVNGIVSPSISRANSVTFCSNA
DGGSSLLFGRFTGNDFIDIFCHRNSTGGMTLFNMNSIQVLSIARTFCEGG
WRLMTADLNGDSNQDLVCLRADGSVSYLLNTDGGTFLTAAEQNINASFTC
NKTLIFGDINGDNKDDIVCQNEDGIIHFALTNSSNLATGLFTSQQTFPTS
WCNGTMDQIMKGDLNGDGKIDLLCHAERTYLRSALISSGASFEEELFEME
LEVCGDENQFLLVRDINGDGYADLVCKSSDLTGTTKIIHNKPGEYFTDQS
VRNEFRFCVNGGPTNFYVEDVNRDGFDDLVCQTSIAKRYIFISRCYF

Run BLAST on NCBI

transcript from alignment at sc0000101:505133..512386+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00009998 ID=TCONS_00009998|Name=TCONS_00009998|organism=Clytia hemisphaerica|type=transcript|length=7254bp|location=Sequence derived from alignment at sc0000101:505133..512386+ (Clytia hemisphaerica)
CTCAACTCTCGGTGACATTGGTAAGGTAAGAATCTTTCCAACGCGCAAca
ttcttttgaataaaaattttcaaccttttttttgaaattcaaaacttcga
ACTAGCATAATAGCTTGTAATTCGAGAGTGAGACAATGTTTTTGGTTCTG
TTAGAAaggtattttataaaaagtattcTGTTTATGCTCTTTTTAAGCAA
GTGATCAGGAAGCTATGGCCTTAAGCCTAGGACTTTTTTTATTAGCTAGT
TTTAACTTATGTACTTACACTTCTCCGCACACCTCTGTGCCATAGTGTCG
GTCAGATCCGCCCCGGTAGATAACCCACTGAAAGAAAACACCAAAAAAGG
GAAAACCAGACTTGCTTATGCTTGAAAGCATAGACCCTAGTCAGTTTTTG
AGACCTCTACCcggtaaaattttacttttcttcATAGAAACCCTGGTGAA
TTTCAAAACCTAGTCGGGTCACTGAGACTGGGCTGTTCTTTGTGGCTTCT
GAGTGTGTGAAtgcatttttaaagttttcctTTGTGATATCACTCAGTGA
CGCGGCATACATTGGCTATATTGTTGTTTAGCGCGTTATTTCGATCTCTT
TAGGTTCTCTGTTTACTTGACCTTGAAATGTATCAATGGTCCCTCGTTAT
CGATTCCAATTGCGAATGTTTTAGTTGATTCATGATCtttatgatgtaat
gttttttacggaaacgccccggtttttgccagtagttaCAAATTTTAAAC
AGTTTTTCTCTATCTTacatttgccactactggcgaAAACTGGTATtttc
gtagaaaacattacgaaATTAATATCACGAATCCGGTGATATTAACCCTA
TCAACTCTTATAGGGGAAATCCGCTTTTGAGGGGTTTGGTAGTGAATTTA
CAAGGAAGTGACGTCAAATTTCTTTGTTTGTAAGGATGTCAATACAACGA
CTTCAGGGATTTTGACGTCATCACGTCTTCCTAGTAAACTCGAACCCAGC
CTCCTTACGCTTTCAAGGTTGATTGGTGTATTCATACCGGGTACGGCAGA
TAccagattttaacaaaaaatcccgaaattttccttttcgtcggtaaaat
cgcttaaatttcctcttTTGCCGTACCGGatttaaaaagcttccgtcgtg
catGACCAGCctcagaccatgttcacacgctACGGTTCCGTTTTTTTCCG
GTATggttttcgttacggatcgagtgtgtccatattggtttcggaacgtt
tcggagcaagaaaacggagcagttccATTCCTGATGAAAAAGTGGAgtga
aaccgtttcgatctgttttgctttgtaatgtcttcttttttgacgtttcg
aattttgacgttcacacttgtttcggaaccgttttgtTTCGTAatggaac
ggaaccgtaacgtctgagcATGGTCTTATTGCAAACCCTTTCGCAACACa
acatttcatcatgaatatgaTTCTGTTGTTTTTTGAGAGATCTGTGTGTG
TGTCATCACACAGCTCGTTTTTGAAAGCACAGAGGATCTAAAACATGAGA
TAAACATGGTTTCCTTATCTCGTTAAAATCTTGGTCTGTCAATGTCATAG
ATTCATTTCATATTGACATGTTTAACTGATATGTTCTGAGTATAttaaca
tttttgatttttttggacaaaaaaatgtGGCTTATTTTTGGGGTAAGTTG
ATATTTGTAAATCGCGATAAATatccattttgttttgttttgttgttaac
ATACCGCAAACCTAGTAGCTTTCAAATTGATTTAAAGCCACCAGCTAAAA
AGAATCTACACTTGGAGTACGTGGTTTCCATTATCTCATTACAGTTTTCA
TTAAGTcttttcaaaactgaaaatcaGTTCCAATACTGAGGCAAGTAATG
TAGCCTAGAAACCACTGAACAcctccaaaattgaaatatcccagacggca
cacaacgtcaaatcaacgtccatgtgacattcataacgtccaaataacgt
tatttgaacgttaaaacaacgttgtgtgccagctgggatctaATGAAATA
AAGTAGAAGTACTAAAATCACAATTCTTgcccgagctttaaattctgcga
aaacgttaaaatacccaaaatatctcaaacttGATTCTAATTAAAACTTG
TACTCTCTTTTTTTTAACAGGTATCCATTTTTCTGCTCAAACTTCCATCA
TGTCAAACCCTCCCAATGTTAGGGTCTTGTTTCGTCAACGGTATCGTCTC
ACCTAGCATCTCGCGTGCGAATAGCGTGACTTTTTGTAGCAATGCAGATG
GTGGTTCAAGGTAATCTTTGATGTTATTCTTCGGAAATTCATGCAGTGGA
GTTAGTCTCTTTAAATCGAACATCtgtaaatttttcattcacAACAATAC
CTTATAAATAAACCCCAAgtttccttaattcgaacaaatttgtgtttccc
gtgcgtgttcgagttacggagactcCACTGTGTTTCGTTTTGCGTGTATG
TAATTATGGATGGTTAAACGGCCTAGTTATTCTCTAGAAATCCGAATTTC
TATGGATCAATTCGAATGGATTCTTTGTAAACAGTCTCGTCCCGTGTATC
CTGTAtttcaggctttatttacgttactgatggacgcTAGAGATAATTAC
CTGGCGTTATCAGTAAGCATCGGAAAGGCGATAATGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaaaaaaaaca
tgtagtacgtacgcactaaggggggaggggggtcttctcaaaagcgtatg
cttgcgtacaggggggaggAGGGGTCAAaagaaaatgtacgtacgcagag
aaaattttttcatagcctcttttcgcttgttttttgtcgacttttacgct
tgttatacgcatcaaggaaaagttgataaacattgagtttcatgtatgaa
ataaaggtcggaaccaaacgatttgaattcgaaattttcttcaaccgagg
gggggtgaatgaaaaagtacgtaatTACCAGAGGAGGGTATAGCCaattg
cgtacagggggagggatTCCtcaattttcgacattttagtgtgtacgtac
tatgtggacggcccccgCCCCAGAGAGATAAAGCTCGAATCAAAGGTCGA
AAGAATCCTTCTGTAAAACTTTCCATAATTACTGCCTGTACACCTTTTTT
TCAGTTTGTTATTTGGTCGCTTTACCGGCAACGACTTTATTGATATATTT
TGCCACCGCAATTCGACCGGAGGAATGACGTTGTTCAACATGAACTCCAT
CCAGGTGTTGAGTATTGCACGGACTTTCTGTGAAGGAGGGTGGAGATTAA
TGACCGCTGATCTCAACGGTGATTCGAACCAAGATTTAGTATGCTTACGA
GCGGACGGAAGTGTCAGCTACTTGTTAAACACAGATGGAGGAACATTTTT
GACAGGTAATCCACTGAATCCAAACATTTCTGAAGAGTTTTCACCTTTTC
GAATGGAAAGTTTGAGCCTTTTAGAATATGAGGTCAGAAAACAAAGTCTC
ACAGAAATAGTGCAGTCAAATCTTTTCTACATCCTTGTCTCGTTGATCTG
GTGAGAATTTACTAATAGGATATAGAATGAAGGTTCTGGATGCCAATGGG
GCTGAATAATGAATTTTATCTTGTGTTTAGTTGGTGGCGGGAACTTCAAA
ATTCTATTGTGTACAGTTCAAACTtacaattttaattaaaaaactttGCT
ATCTTTCCTGGCGAGGATAGGCCTTGAAAATGGGATTGGATTTTTATCAC
CTGGAAGAGTTTTTCAGGATGAAGGGGTCCGATcttttgtgacacagggg
tgttttctcTGACTAAAAAAAGTACCCGGACAGAACTTTGACATAGATGT
GGgtctttttcagaaattgatcatttcttttatgaaatcggcattttttt
ctttcacagcGGCCGAGCAAAATATCAATGCATCGTTTACGTGTAACAAG
ACCCTAATATTTGGTGACATCAACGGCGATAACAAAGACGATATTGTTTG
TCAAAATGAAGATGGAATCATCCACTTTGCTTTGACTAACTCATCCAATT
TAGCAACGGGTTTGTTTACATCACAACAGACATTTCCAACGAGCTGGTGT
AATGGAACAATGGATCAAATTATGAAAGGTATTTACTTGGTTTCCCTGTC
AACTGACATACCATAATTAGTGTCAAGGGGGCATACCATAATTAGTTGCG
ATGGGATAATTTTGAcaacttttcttttatttatcgcgcaatttttcaTA
CActaaatatttttccttttaatCCCATGCTAGAGATAAAACTTTATCAA
GCCATTCAAGAAAGTACAGTTGGCATTGATTTACCGTAGCCTTACCCCGC
GGAAAAtttggtatttctatttttacGTTTTCTTTGTGGGAAAACAATAT
GATATGCCAATAAATGCCAGGAATATGACAAAGCAACTGTCAAGTTTGTT
TTTCACTGATTGCGAAATGTGAAGCGCGTATAAAGTTTGTTTTCAGTGTC
GAAAGTAAGAGTCTGACGTAAAAAAACACTGCTTTTGAACCGTGAATTTA
TTCTCTTCATGAAATTAAGCAAAAAAGCAGCTGCTTTTGTGACAGACCCC
AGTCCGCTCAAAAATCCAGTAAGAATTCTTTCTGGGATGGCTTTCCCAGT
GGATTTCTAACTTTGAAGTTTGAAGAATTTCCGATGACCAGCCTATTTTC
TCACCGGGACGATTTCTGGCTGATTTCTTTTCAGTGAGAAAAGAGGGTCC
CATGGGGTCTTTCacaaccggttgggaacagtaattttgccggaaaaccg
gtttttaggcctacagagccgtctggGCATATATGAACCCTCTTTCTCTT
AGGTGACCTGAATGGAGACGGTAAGATTGATCTTTTGTGTCACGCCGAGC
GAACTTATTTGAGGAGCGCGCTCATTTCTTCGGGAGCAAGTTTTGAAGAA
GAATTATTTGAGATGGAGTTGGAAGTGTGTGGCGATGAAAATCAATTTCT
ATTGTAAGTATTGTAAGTTATGATATGTTGTTAACCGTTTACTATTTCGA
ATAGGGTTacacgactttttgcgcaatgcaattggttcttttcgcatgac
gacgggcctacactgcccagagttgcccgtcgttaggaaaatttattgtg
acgtcactttttcaaaggaaaatgaacaacgCGTTGatatcatttctctc
atttttttatttcctcGGTCAaagcaacaacctcgcaagcttggtcgtta
cttgaccttgGGCAATATTTCTCTGCCCTccctaaccggtcattattgta
ttaataacattagcagaaaaaaaacatcatctTTTTAACGAACAATTTCA
GCCTCTGGTTCTTTAAACAATATGTCTGGGAAAGAcgactgaaaaaaata
aagatttgtgTGAATTTCtgacatgaaaaatgaaaacaaatgatgtcaac
gtagtgttcattttctttgaaaataattggcgtcacaatgaattttctta
ACAACGGGCACATCGTGCTATGTAAGCCCGTCGTCATGTGAAAAGAACCA
ATCGCGTTGCGTAAAAACTCGCACAGCCCgcacaaaaaataacaataatt
aataatataatttttagcagattaagaataattttttttccaaaacttca
CCTACACCTATATTCACCTACATTTATAGTCAACAAGCTAACGGTCAAAT
TTGGATCAATGACCTCCTTACCGGAcataatatttacaaaaatattctaa
attcTATGTCAAATAGAAGTTTCCATTTCAACAAAGTCCACCACTTTTAA
ACCAAAATAGCCCAAATTATATCATCAATAGCTATCATTTCCCGCCAAGT
TTTCTCCATAACTCAACTGGAATAATTATTACTTTCCCTTGTCGTTCGAG
TTGTTAGACTCAACTTTATTTATCACGGAGACTTACCATAGTTTTGCATA
CATAAGATTTCTTTTCCCAAGATTCTCCAGCCACTTTTCTACTGGAAAAA
GACCAGAACTCCGGGTAGCTGAGAAATGATcttcggaaagttaggcagtt
tcgtgagtaaacacaagattttccgtacctttagaagaaaatcctttcca
atctcatgccggtTATCCCGGGAAAAATACGTGGAAAAAACCCCGGAATA
GTGGCAAATCAATCTTAATGCGAGAATtggaatcttatgcaaaacgacgg
cacgcgtttttttataagaacaaactatataagaacataaggcttcgcag
actagaaaacacccaatttcttagaaaaattgacaaaaatagtcaaaaaa
tgaattgtttgaatgttcttataaagaaaacgtatATTCTACTGTCATTT
TTTAGAGTTCGTGATATCAACGGTGACGGATACGCTGATCTGGTCTGTAA
ATCTTCCGACCTCACTGGTACCACTAAAATCATCCATAACAAGCCTGGtg
aatattttacagaccagtctgtaCGCAATGAGTTCCGTTTTTGTGTAAAT
GGTGGACCGACAAATTTTTATGTGGAAGATGTGAACAGGGATGGCTTTGA
TGATTTGGTTTGTCAGACCAGCATCGCAAAAAGATATATCTTCATCAGTC
GATGCTACTTTTAAAATCTAACACTTCTATCAATATAAACATTTGAAAGa
cttaaaatttcgaaaagtaATACAGTCCCAAAAATTGGTTTCTCTCTTTG
ATATGAAGtgaattttaaaagttgaaCCTTTTGGAAAGGGAATATATAAA
CTTAAATTGATGGGTTGTTTATCGATTGGGCCATTACATCAAATGTTACG
ATTCTGCAGTTACATTGGTTTCTTTGCTCACTGAGAAGTCATTTTGATCA
Taat

Coding sequence (CDS) from alignment at sc0000101:505133..512386+

>TCONS_00009998 ID=TCONS_00009998|Name=TCONS_00009998|organism=Clytia hemisphaerica|type=CDS|length=1044bp|location=Sequence derived from alignment at sc0000101:505133..512386+ (Clytia hemisphaerica)
TCAACTCTCGGTGACATTGGTAAGGTATCCATTTTTCTGCTCAAACTTCC
ATCATGTCAAACCCTCCCAATGTTAGGGTCTTGTTTCGTCAACGGTATCG
TCTCACCTAGCATCTCGCGTGCGAATAGCGTGACTTTTTGTAGCAATGCA
GATGGTGGTTCAAGTTTGTTATTTGGTCGCTTTACCGGCAACGACTTTAT
TGATATATTTTGCCACCGCAATTCGACCGGAGGAATGACGTTGTTCAACA
TGAACTCCATCCAGGTGTTGAGTATTGCACGGACTTTCTGTGAAGGAGGG
TGGAGATTAATGACCGCTGATCTCAACGGTGATTCGAACCAAGATTTAGT
ATGCTTACGAGCGGACGGAAGTGTCAGCTACTTGTTAAACACAGATGGAG
GAACATTTTTGACAGcGGCCGAGCAAAATATCAATGCATCGTTTACGTGT
AACAAGACCCTAATATTTGGTGACATCAACGGCGATAACAAAGACGATAT
TGTTTGTCAAAATGAAGATGGAATCATCCACTTTGCTTTGACTAACTCAT
CCAATTTAGCAACGGGTTTGTTTACATCACAACAGACATTTCCAACGAGC
TGGTGTAATGGAACAATGGATCAAATTATGAAAGGTGACCTGAATGGAGA
CGGTAAGATTGATCTTTTGTGTCACGCCGAGCGAACTTATTTGAGGAGCG
CGCTCATTTCTTCGGGAGCAAGTTTTGAAGAAGAATTATTTGAGATGGAG
TTGGAAGTGTGTGGCGATGAAAATCAATTTCTATTAGTTCGTGATATCAA
CGGTGACGGATACGCTGATCTGGTCTGTAAATCTTCCGACCTCACTGGTA
CCACTAAAATCATCCATAACAAGCCTGGtgaatattttacagaccagtct
gtaCGCAATGAGTTCCGTTTTTGTGTAAATGGTGGACCGACAAATTTTTA
TGTGGAAGATGTGAACAGGGATGGCTTTGATGATTTGGTTTGTCAGACCA
GCATCGCAAAAAGATATATCTTCATCAGTCGATGCTACTTTTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_005609	XLOC_005609	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00009998-protein	TCONS_00009998-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000101	supercontig	sc0000101:505133..512386 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.975875	2.29112	2.25294	3.17355	0.126787	0.311007	0	0.373271	0.98374	0.962826	1.03555	1.11665	0.710611	1.17433	0.474513	0.55661	1.18809	0.937464	0.245349	0	1.5113	0.670139	207.206	169.175	11.49	1.5324	113.459	144.065	1672.19	1490.64

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00009998 vs. Swiss-Prot (Human)

BLAST of TCONS_00009998 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00009998 (transcript) - C. hemisphaerica