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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010074 ID=TCONS_00010074|Name=TCONS_00010074|organism=Clytia hemisphaerica|type=transcript|length=4966bpRun BLAST on NCBI protein sequence of TCONS_00010074-protein >TCONS_00010074-protein ID=TCONS_00010074-protein|Name=TCONS_00010074-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1267bp MTNFIQFFFLVCFLKIIFCNDGCPGGWNEWTECKGCFRTQTRTCKDGDSNRun BLAST on NCBI transcript from alignment at sc0000102:280562..299044+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010074 ID=TCONS_00010074|Name=TCONS_00010074|organism=Clytia hemisphaerica|type=transcript|length=18483bp|location=Sequence derived from alignment at sc0000102:280562..299044+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000102:280562..299044+ >TCONS_00010074 ID=TCONS_00010074|Name=TCONS_00010074|organism=Clytia hemisphaerica|type=CDS|length=76080bp|location=Sequence derived from alignment at sc0000102:280562..299044+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00010074 vs. Swiss-Prot (Human)
Match: VWDE (von Willebrand factor D and EGF domain-containing protein OS=Homo sapiens GN=VWDE PE=2 SV=4) HSP 1 Score: 165.622 bits (418), Expect = 8.499e-41 Identity = 124/462 (26.84%), Postives = 217/462 (46.97%), Query Frame = 3
Query: 2307 LPTFPTKSGTTRAEAESNCTKAIEESTFGKACLDMFPSLNLTTLVEECVTDIEIMDDLAGPTASVVDSITELCKFTVINEIXXXXXXXXXXXXXXXXXDGAGNSGEM--VIPDVLKNNLCPSDCSGNGKCVNGTCQCDYDFISLDCSIRRNSPLQINSLANGGLCDIRKRDCLRARMLGWNFVDSLNLQSRSVEVEIPTEGQGYTKTKKVNVDDAFVLSLSEIVVEIPHDPTEINNVEIADNVGRPVGGFLVSVSSNGFNSTSNQSLFVVYDGKCLDCKSKNLQICTQKTDTCLVNGYCFGSKEVHPNDWCQICDPQANVF--AARKDNKAPIFR--KDKSVKAIKGQRNRFNIIAEDPENKTITYSLNVGASSMYKITNGGLLSFTPTEVGVSRVTIRATDICGAYIDQEFTFETLKCPCEGLNGGSC----RFNETDRMQLECVCPQGCTGERCDQPLKG 3662
P++PT SG T + C + + S+ G+ CL F L +++E CV D+ + DDL+ A V E C+ ++ E G N+ E I D+L CP+ CSGNG+C+ C C F S DCS + +I L N G CD++K +C+ R+ G F + +++ +++ + + + F S + + ++P D + + +++ G+P G + + VS++G+ SN + V+YDG C C CT K + C+++G C+ + +P C IC P+ + F + ++N+ P+ + +DK ++ G+ + +A DPE I ++L+ G +++ GL + + ++T+R D C A + T E C+ LNGGSC F+ + L CVC G G C+ + G
Sbjct: 792 FPSWPTPSGLTEYSTLTLCQETLANSSIGRLCL-AFLGKRLDSVIEMCVKDVLLKDDLSWAEAGVALLENE-CEKRIVEE-------------------GKYNTEEYGTSIEDILSVLKCPNLCSGNGQCMEWGCACSPSFSSYDCSDSYDKAPEITELGNAGFCDVQKYNCMMVRVFGKGFKELPSIKCEVTKLQY--NSSEWMPGEPIYTQTVFHNSRA-VDCQLPTDVQQFDTMDLVG--GKPTGKWQLKVSNDGYK-FSNPKITVIYDGACQVCGLYKNDSCTIKENVCIIDGLCYVEGDKNPTSPCLICRPKISRFTWSFLENNQPPVIQALQDK-LQTFYGENFEYQFVAFDPEGSDIHFTLDSGPEGA-SVSSAGLFMWKTDLLTTQQITVRLNDDCDA--ETRVTIEVTVKSCDCLNGGSCVSDRNFSPGSGVYL-CVCLPGFHGSLCEVDISG 1221 HSP 2 Score: 107.071 bits (266), Expect = 6.490e-23 Identity = 151/651 (23.20%), Postives = 253/651 (38.86%), Query Frame = 3
Query: 372 RSTAFILKQGS-QQYKCDLGMRHFWYRFT---SPAGGKMPTTEPQQNACGATQSIWLDGSHPVDIGNETTLQARVVSQIRAYTPWSV---KAKKC-------QSKNYKDETFFIYYLESVPTCPMVYCAG--SEKRCPGQLSSKNGFTPGCSDNYPKYNNPP-----TINIKLQDNKIRMTCIIDPLEKTPNVKHEVSF---YQGANNKLIKMVVVRGDETDVAPYVENPENWGEATIFNLGNEFFCQVISYFEDKVNVTGKGSPQKSNVKFAGIKVEPERLVFKSNEDVKSIKIYSTVGISQMDGCSLQSIFHETQDDAVPMLCTKCLTNDFYGREN--------AWELNVTRTS-FTNGLSEHMFIRIITMPNGNLRDWDQGTH-------------------EVMVIVNKAGPKRCQATGDPHFTTFDGLYFHMYHVGDYVMMGTHGGRTMVHMRTHVCNGR---VSCICGIAVRYGDDVVTIDMCRGGV----SVRFPSKKPLNPAFKVTRVGSGRNYNIFTPDGVSIRFDGHLYWWTGRPYYANVYIQTTS-DYRDKTFGMCGNNNDDIEDDHMTKDGKKLESHFNIVASELYTAEWKIPRGHSLFYY---------QPGWTECDIERKKFCSCRGKDTIECKEVT 2117
R ++ L+Q + Q CD + WYRF PA +MPT + N CG IWL +ET + Q+ A W K C +N + F +Y L+ C M YCA S+ R S + C PP + ++L ++++ C D P K+ V F + +++ +K + + +E + LG+ FC +F + +V + +S FAG K++PE + ++I STV I + S F E + L K + GRE+ + +++ +TS NG H F+ + + + RD D+ ++ + + V C DPH TFDG + + G +V+ + VH+R C VSC CG + G D+VT DMC G + F + + K++ GR I+ G IR D L W ++ I+ S DYR+ T G+CG +++ E+D K+G +++ +FN + + EW+I G S+ +P + C ++ + S D++ E+
Sbjct: 39 RFDSWHLQQSAVQDLICDHSLSPGWYRFLILDRPA--EMPTKCVEMNHCGTQAPIWLSLRD-----SETLPSPGEIKQLTACATWQFLFSTTKDCCLFQIPVSVRNCGN--FSVYLLQPTQGC-MGYCAEAISDARLHPCGSDETETGGDCVRQLAASLPPPPAGRPEVLVELIESRLFCRCSFD----VPATKNSVGFHIAWSRLSSQEVKEELTQETTVQAFSLLEL-----DGINLRLGDRIFCSASVFFLENPHV--QSVAIESQEFFAGFKLQPELSTISEDGKEYYLRIESTVPI-------ICSEFSELDQECKISLKLKTIGQ---GREHLGLNLALSSCHVDLLQTSSCANGTCSHTFVYYTAVTDFS-RDGDRVSNIVVQPIVNEDFLWNNYIPDSIQIKVKDVPTAYCYTFTDPHIITFDGRVYDNFKTGTFVLYKSMSRDFEVHVRQWDCRSLHYPVSCNCGFVAQEGGDIVTFDMCNGQLRESQPYLFIKSQDVTRNIKISESYLGRKVTIWFSSGAFIRAD--LGEWG-----MSLTIRAPSVDYRN-TLGLCGTFDENPENDFHDKNGMQIDQNFNNYVA--FINEWRILPGKSMSDTLPVSMTSPGKPSYCSCSLDTAAYPSSEDLDSVSRSEIA 647 The following BLAST results are available for this feature:
BLAST of TCONS_00010074 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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