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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011275 ID=TCONS_00011275|Name=TCONS_00011275|organism=Clytia hemisphaerica|type=transcript|length=2315bpRun BLAST on NCBI protein sequence of TCONS_00011275-protein >TCONS_00011275-protein ID=TCONS_00011275-protein|Name=TCONS_00011275-protein|organism=Clytia hemisphaerica|type=polypeptide|length=604bp MKCQQTIKSKNRLSASLAFRKEMKRKHVGKKDNPQPTLVKVKNKDLEDETRun BLAST on NCBI transcript from alignment at sc0000124:262301..266404+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011275 ID=TCONS_00011275|Name=TCONS_00011275|organism=Clytia hemisphaerica|type=transcript|length=4104bp|location=Sequence derived from alignment at sc0000124:262301..266404+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000124:262301..266404+ >TCONS_00011275 ID=TCONS_00011275|Name=TCONS_00011275|organism=Clytia hemisphaerica|type=CDS|length=5445bp|location=Sequence derived from alignment at sc0000124:262301..266404+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011275 vs. Swiss-Prot (Human)
Match: ZNF57 (Zinc finger protein 57 OS=Homo sapiens GN=ZNF57 PE=2 SV=3) HSP 1 Score: 175.252 bits (443), Expect = 9.894e-47 Identity = 100/290 (34.48%), Postives = 148/290 (51.03%), Query Frame = 3
Query: 912 NGISEIGKKVQERIKQRKNVTCKVCGKS-VKDYFLDRHMKAH--EKPDFKCNACGKMFSYRSKLQEHQRLHSGEKPPRKAGKTPRKAEKSPRKAKKTHYCQFCSAKYTTSYEFKRHMKSHNGGKDIFQCPNCGKEFSTITYFNEHERTRCGTKPYTCKICSKALFSAKSLKDHALIHEPEKHLSCTVCGKTFPHRKNLKQHMMIHPDYNVFKCKICGEPFSILSEYQKHVKSHLNLPIFVCKVCGKNFNREIQLKGHEKRVHGGEKPYECTVCGKRFSLSGNLKNHLKTH 1772
NG + + V+ K R C+ CG++ + RHM H EKP +KC CGK F+Y Q H++ H+GEKP + C+ C ++ S + HM+ H G K +++C +CGK F++ F H RT G KPY CK C KA + + ++H IH E+ C CGK F ++ + H+ H ++CK CG+ F+ S +++HV+ H + C+ CGK F +GH R+H GEKPYEC CGK F+ S L NH++ H
Sbjct: 234 NGFASFTRHVRTHTKDRP-YKCQECGRAFIYPSTFQRHMTTHTGEKP-YKCQHCGKAFTYPQAFQRHEKTHTGEKP---------------------YECKQCGKTFSWSETLRVHMRIHTGDK-LYKCEHCGKAFTSSRSFQGHLRTHTGEKPYECKQCGKAFTWSSTFREHVRIHTQEQLYKCEQCGKAFTSSRSFRGHLRTHTGEKPYECKQCGKTFTWSSTFREHVRIHTQEQLHKCEHCGKAFTSSRAFQGH-LRMHTGEKPYECKQCGKTFTWSSTLHNHVRMH 498 HSP 2 Score: 155.221 bits (391), Expect = 7.144e-40 Identity = 88/265 (33.21%), Postives = 135/265 (50.94%), Query Frame = 3
Query: 1020 HMKAHEKPD-----FKCNACGKMFSYRSKLQEHQRLHSGEKPPR-KAGKTPRKAEKSPRKAKKTHY------CQFCSAKYTTSYEFKRHMKSHNGGKDIFQCPNCGKEFSTITYFNEHERTRCGTKPYTCKICSKALFSAKSLKDHALIHEPEKHLSCTVCGKTFPHRKNLKQHMMIHPDYNVFKCKICGEPFSILSEYQKHVKSHLNLPIFVCKVCGKNFNREIQLKGHEKRVHGGEKPYECTVCGKRFSLSGNLKNHLKTHDK 1778
H+ +H + D +KC ACG+ F + L H + H+ EK + + + S + +TH CQ C + F+RHM +H G K ++C +CGK F+ F HE+T G KPY CK C K +++L+ H IH +K C CGK F ++ + H+ H ++CK CG+ F+ S +++HV+ H ++ C+ CGK F +GH R H GEKPYEC CGK F+ S + H++ H +
Sbjct: 182 HLHSHGRTDTEEKPYKCQACGQTFQHPRYLSHHVKTHTAEKTYKCEQCRMAFNGFASFTRHVRTHTKDRPYKCQECGRAFIYPSTFQRHMTTHTGEKP-YKCQHCGKAFTYPQAFQRHEKTHTGEKPYECKQCGKTFSWSETLRVHMRIHTGDKLYKCEHCGKAFTSSRSFQGHLRTHTGEKPYECKQCGKAFTWSSTFREHVRIHTQEQLYKCEQCGKAFTSSRSFRGH-LRTHTGEKPYECKQCGKTFTWSSTFREHVRIHTQ 444 HSP 3 Score: 112.464 bits (280), Expect = 7.927e-26 Identity = 74/239 (30.96%), Postives = 114/239 (47.70%), Query Frame = 3
Query: 975 CKVCGKSVK-DYFLDRHMKAHEKPD-FKCNACGKMFSYRSKLQEHQRLHSGEKPP--RKAGKTPRKAEKSPRKAK-----KTHYCQFCSAKYTTSYEFKRHMKSHNGGKDIFQCPNCGKEFSTITYFNEHERTRCGTKPYTCKICSKALFSAKSLKDHALIHEPEKHLSCTVCGKTFPHRKNLKQHMMIHPDYNVFKCKICGEPFSILSEYQKHVKSHLNLPIFVCKVCGKNFNREIQL 1664
CK CGK+ L HM+ H +KC CGK F+ Q H R H+GEKP ++ GK + + + + C+ C +T+S F+ H+++H G K ++C CGK F+ + F EH R + + C+ C KA S+++ + H +H EK C CGKTF L H+ +H KCK CG F S ++ H++ H C+ K F+ ++ L
Sbjct: 310 CKQCGKTFSWSETLRVHMRIHTGDKLYKCEHCGKAFTSSRSFQGHLRTHTGEKPYECKQCGKAFTWSSTFREHVRIHTQEQLYKCEQCGKAFTSSRSFRGHLRTHTGEKP-YECKQCGKTFTWSSTFREHVRIHTQEQLHKCEHCGKAFTSSRAFQGHLRMHTGEKPYECKQCGKTFTWSSTLHNHVRMHTGEKPHKCKQCGMSFKWHSSFRNHLRMHTGQKSHECQSYSKAFSCQVIL 547 HSP 4 Score: 103.605 bits (257), Expect = 6.578e-23 Identity = 84/299 (28.09%), Postives = 125/299 (41.81%), Query Frame = 3
Query: 990 KSVKDYFLDRHMKAHEKPDFKCNACGKMFSYRSKLQEHQRLHSGEKPPRKAGKTPRKAEKSPRKAKKTHYCQFCSAKYTTSYEFKRHMKSHNGGKDIFQCPN--CGKEFSTITYFNEHERTRCGTKPYTCKICSKALFSAKSLKDHALIHEPEKHLSCTVCGKTFPHRKNLKQHMMIHPDYNVFKCKICGEPFSILSEYQKHVKSHLNLPIFVCKVCGKNFNREIQLKGHEKRVHGGEKPYECTVCGKRFSLSGNLKNHLKTHDKGKGKYDTETVGGKRNGTVETSEQTITSSGKLPLK 1880
K+++++ +DR +E N G+ L H+++ +GEKP + C C +T KRH+KSH G K P C + ++ + H RT KPY C+ C + + L H H EK C C F + +H+ H +KC+ CG F S +Q+H+ +H + C+ CGK F + HEK H GEKPYEC CGK FS S L+ H++ H G Y E G + T +G+ P +
Sbjct: 98 KNLRNHMVDRFCTHNEG-----NQYGEAIHQMPDLTLHKKVSAGEKP---------------------YECTKCRTVFTHLSSLKRHVKSHCGRKAP---PGEECKQACICPSHLHSHGRTDTEEKPYKCQACGQTFQHPRYLSHHVKTHTAEKTYKCEQCRMAFNGFASFTRHVRTHTKDRPYKCQECGRAFIYPSTFQRHMTTHTGEKPYKCQHCGKAFTYPQAFQRHEK-THTGEKPYECKQCGKTFSWSETLRVHMRIHT-GDKLYKCEHCGKAFTSSRSFQGHLRTHTGEKPYE 365 The following BLAST results are available for this feature:
BLAST of TCONS_00011275 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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