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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00011975 ID=TCONS_00011975|Name=TCONS_00011975|organism=Clytia hemisphaerica|type=transcript|length=3231bpRun BLAST on NCBI protein sequence of TCONS_00011975-protein >TCONS_00011975-protein ID=TCONS_00011975-protein|Name=TCONS_00011975-protein|organism=Clytia hemisphaerica|type=polypeptide|length=671bp MTQSKNDFLILYGSQTGQAQAISEEIFDKAHKEGFSPRRFCLSMIEKKFSRun BLAST on NCBI transcript from alignment at sc0000134:204465..243569- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00011975 ID=TCONS_00011975|Name=TCONS_00011975|organism=Clytia hemisphaerica|type=transcript|length=39105bp|location=Sequence derived from alignment at sc0000134:204465..243569- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000134:204465..243569- >TCONS_00011975 ID=TCONS_00011975|Name=TCONS_00011975|organism=Clytia hemisphaerica|type=CDS|length=2016bp|location=Sequence derived from alignment at sc0000134:204465..243569- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00011975 vs. Swiss-Prot (Human)
Match: MTRR (Methionine synthase reductase OS=Homo sapiens GN=MTRR PE=1 SV=3) HSP 1 Score: 476.093 bits (1224), Expect = 1.128e-152 Identity = 286/708 (40.40%), Postives = 428/708 (60.45%), Query Frame = 1
Query: 37 FLILYGSQTGQAQAISEEIFDKAHKEGFSPRRFCLSMIEKKFSLIKENLVVFVCSTTGEGEPPDTASKFFRRLKKKTLANNHLEHLRFAFLALGDSNYTNFCACGKNIDARLLDLGAKHIYDTGYADDAVGLEIAVEPWIENLFPALRKHLNLSQ------------------TDVAEKGM------------DDTQQNEEKDVKEPAIAEDKQX-------XXXXXXXXXXXXAALKIPSCPDSYLEIEHFDADTQEIKEAKPRHPSAETDVFEALVKSAKRLTNDPLVKKTLQLELDTLSYDFDFQPGDSFGIVCHNTNSDVDYLIQRLEISDADEQ-MTLXXXXXXXXXXXXXXXHINIPSSIRKILTDDVDFRAVPRKGFIRMMVDYTEDPQEKRRLQELCSVQGGKEYTMFIREQSIGLVEMLMTFKSCKPPIQRVLEFLPRLLPREYSVANSPLEDKKMVRFVFNIIEFPDFLQNK--RYGLCTNYLDKLTXXXXXXXXXXXXKKNVEKMVHDLSIKDKPTVAMYFRRPTNFRFPEDPSHPLIMIGPGTGVAPFIGFLDHRVGLRKQDASINFGEAHLFCGCRYKEKDFLYRSEIENHLASGNLTQLYASHSRD----ERQGPSHTKYVQENXXXXXXXXXXXXXXQQGAVYICGDAKHMGRDVTNTFVELIGEYKELSKFESIKLLDSLRKTKQFLEDVWT 2028
FL+LY +Q GQA+AI+EEI ++A GFS C+S +K + +V V STTG G+PPDTA KF + ++ +TL + HLR+ L LGDS YT FC GK ID RL +LGA+H YDTG+ADD VGLE+ VEPWI L+PALRKH S+ TD+ + + DD+ + + + +K+ A+ ++ + SSL +S+ LS A+L IP P YL++ ++ QE E++ SA+ VF+ + A +LT + +K TL +ELD + DF +QPGD+F ++C N++S+V L+QRL++ D E + LKIK +TKKK T+P+HI S++ I T ++ RA+P+K F+R +VDYT D EKRRLQELCS QG +Y+ F+R+ L+++L+ F SC+PP+ +LE LP+L PR YS A+S L + FVFNI+EF + R G+CT +L L + N+ D P +++ R +F P+DPS P+IM+GPGTG+APFIGFL HR L++Q NFG LF GCR+K++D+L+R E+ + L G LT L S SRD E + P+ KYVQ+NI+ +++ ++ ++ G +Y+CGDAK+M +DV + V++I + + K E++K L +L++ K++L+D+W+
Sbjct: 31 FLLLYATQQGQAKAIAEEICEQAVVHGFSADLHCISESDKYDLKTETAPLVVVVSTTGTGDPPDTARKFVKEIQNQTLPVDFFAHLRYGLLGLGDSEYTYFCNGGKIIDKRLQELGARHFYDTGHADDCVGLELVVEPWIAGLWPALRKHFRSSRGQEEISGALPVASPASSRTDLVKSELLHIESQVELLRFDDSGRKDSEVLKQNAVNSNQSNVVIEDFESSLTRSVPPLSQASLNIPGLPPEYLQVHLQESLGQE--ESQVSVTSADP-VFQVPISKAVQLTTNDAIKTTLLVELDISNTDFSYQPGDAFSVICPNSDSEVQSLLQRLQLEDKREHCVLLKIKADTKKKGATLPQHIPAGCSLQFIFTWCLEIRAIPKKAFLRALVDYTSDSAEKRRLQELCSKQGAADYSRFVRDACACLLDLLLAFPSCQPPLSLLLEHLPKLQPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLV--------ASVLQPNIHASHEDSGKALAPKISISPRTTNSFHLPDDPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGCRHKDRDYLFRKELRHFLKHGILTHLKVSFSRDAPVGEEEAPA--KYVQDNIQLHGQQVARILLQENGHIYVCGDAKNMAKDVHDALVQIISKEVGVEKLEAMKTLATLKEEKRYLQDIWS 725 The following BLAST results are available for this feature:
BLAST of TCONS_00011975 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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