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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00012875 ID=TCONS_00012875|Name=TCONS_00012875|organism=Clytia hemisphaerica|type=transcript|length=3982bp
CcctttttactttcatttttacaatgaaatgataaaaagtatAATAGTTT
TGACATTAAAATTGCGTTCTTCGATTAAATGGATGATTTTGTCAGGTCTC
TCTTGTCTGTCATTAGCagctatttcaaattttcatttcaattttagaGA
TAAGACAAATGCGCATGCGTAAAAACTGTTGAGTTCATTGACCGATTACT
ATTTTCTCCCAACTATTTACCCGAATCGGACCGTGTGTAAACTCCATACT
CCATTGAGtaccgccattttgaatttcaaaagtgacCTGCTTCGCTTGGA
AGATCTACAAACAGCTACACATTGTCTTTCAGCTTTGATTTGTCGTGAAA
GTGgaagaataaatttaaaatctgTGCATcttttttagatgaaaaaataa
ttttacttaACTTATTAAGAATCGAAAATTATGTCGTCGCCTGAACTTGA
TAGAGATAGGAGGAGCTCCTCTCTAAACCGAAACTCTGGACGCTATGATG
GCTACAACAACAACAGACAATTTTCTGGACGTGATCGATCCAATAAAGGT
GAAGTTATTGCTAGAAATTTTCCCTTTGACGCTACTGATCGTGAAAtcaa
ggaagaaattttcagagaAATTGAAAGGTTTGGAAACATTATACATGTTC
TTGTTAGAGGTCATGATCAAAACCGAAAGGCCTATATCACATTTGGTGAA
GAAGATGCAGCTCGAGAacttaaaagattttgtttggaGAGACGTATGAA
AATTAGTGCATTCAATAGAACAttgcattttgattttgatggtAATGATT
ACCGAGGTGGAGACTTCAACCGTGGAGGCTATCAAAATAGAGATAATTTT
CAACGTAACAACTTCAGGAATAATGACCGGTTTAATGATAGAAATGATTT
TAACCGAGGAGGGAGAGGAAATGATTTTGGAAAAGACCGCTTTAACAATG
ATAATCATATCAATCCTAGAGCCACCAGAACTCTTTTTGTAGGAAATTTA
GAGCCAAATATTACGAAAGAGGAGCTTATGAGAATCTTTGATAAATATGG
TGCCATTGATGATATTGATGTTAAGAGACCACCAAATGGGATCCCTCCTT
ATGCTTTCATTAAGTATCTTGAGCTCGATGCTGCTGCCTGTGCTAAGAAC
CAAATGTTTGGCGGTGACATCAAAGGTGACCGTCATGCATTTGTTGAATT
TGAGAGTATTGATGCTGCTTCAGCAGCTTATACTGAAATGAGAGGATTTC
CTTTGGGGGGCCCTGAACGTAAGATAAAGATTGATTATGCTGAAATCAAA
CGTAATGATGATCGAGGAGGGGATAGACGTGATTTTGATAATCGTAATGA
GGACCGTGATTACAACCGAGGCAATCGTTATGGAAATGAAAATCAAAGCA
ATTACACTACTTACAGAGGGCGAGGAGGAAGCAATGGTAATAATTACCGG
GATAGAGATTCAGAGGATCGTTCTGATCGCAGGAGGAGTAGGACACGTAG
TCGTAGCCCAATCAATGGTGACAGAAATGAATCAAGGGGACGTAATACCC
CACCAGGAGGAGCCAGTCCACAAAAGACCCCCATTGATAATCATCCAAAA
TCCATATCAGAgatttcaaaatcttcaaatacaGAAAAACCTGAGAAACC
AGTTTCAAATTCAGTTGAGCCTTATGATTCATCAAAACCACAAGAAAGTT
TAGTTGATATTGCTAAGAGATTTGTTGTTGCTTGGAAAGGAGCTTTTGCA
TTAAAGAATAGTGCATTCCCTGTCCGTATGCATTTGATCGGTGGAAATCC
TGATATTGCTAACTTTTACCTGCGTGGCATTGGTACAGGTGCTGGACCTG
CCATAAAGATTCTTAACATCACCCAACGATTGAGATTAGATCAACCCAAG
TTAGATGAAGTTTCTAGACGTGTGCAACAGTCAGGTGCTGGTGGCCATTG
CATGCTTTTGGCTTTACCCACAGGTGATGAGGTTGAACTTGAAGTATCGT
ATCAAAGAAGACCTTTGAAAAGTTTGGTGACTTactttaaaaagaaagaa
gCAGCAGGTGTAATTCTAATGAGTTCAGCTGAAGGTCCAGAAGGAAAACT
TGAGGAGACTGGTATGCTTCATGCTTTTCCACCGTGTGAATTTTCACAGC
AACAATTATTGAAAGCCGCTCCAAATGCTGGTGCTGATCCTTTGAACGAA
GACCATTTAGTAATTGTTGTTGTTAAAGGAACTACTTCATGAAgtcttga
tatcttttgatgattttgtttATTACGGCTGCTATATCGAATCTATAATT
ACCACTTTTACATCGTGTTCATCTACCTAAGACGTTTATTTTTGCTTCTC
AGAAAAAAGACAGTATTATGGTATTACTGGTATTTTGTTTTGGAGAGTTT
TGTTGCTGGTTATTTGTGGACATTAATTCTACCCATTGAAAGCTACTGGA
TATGAGATATCTTTGATATTATCTTATTACTATAGTTTATTTTTAGGTCT
TGTATTTTGAGTCAACAAGAATTCTAGAAACTCAAATCTTAGCTTATGAT
TACGTGCTGTAGAACTGCCTAATTTCATTCTACTTATATATTCTTCATAA
ACTCTGTATTCGATTAACTTGAAAAAATTAGGTGGTTCGACCGTCACTTT
TaagattttataattttgagattCTGAAAAGCAACCCATAAAGAGTTTTg
ctgaaaataataacaatctAAATAGGACTGTAGGTGCTGATTTGACACAT
AAGATCTTTACTTCATTTTGCCCTGAATTTTCTTGACTTGCACTTCTTGA
ATATAAATTGCTGTTTCGTTTTCATCttaaaattattacaaaaattaATG
TATGCTTAGTAATTCTAAATTATTAGGATTAAAgtatttcatgatatttt
taaTTTGGAACTAATACTTCTAGAtactgatttttcttttgtgCTTGAAA
TTGTCCTGAATGATGTAATGCGTCGCAGGTTTGGTTTTCCGGGCATCTTT
TATGAGTAGGAGTGATGGTTTAAAAGATCATTCGCTCTTCGCTCTTATTT
TGCTTGAGAGAAGCCTCGCCTCAAGGGAATAATGCGAGAATAAATGAATG
CGACCGACCCttaaaaaattttatgttttgtggAATAAATCAATGCGAAT
TGCCCAGGAATTTTGCGGAATTGATTAATTCGGAATagtgttttgaatgt
ttttttttccttttcaagaTATATACAGAACGAACTAAAAAAATTCcaac
aaaatataattttatttattCATCTTGTTTTTAGtcgatttaattttgcg
aaaaaggGCCAAATTCGCATTAATCAATTCCGCATTAATTTCTcctcgca
ttaatttattccctgAAAGGGAGGAGATTAGAATTTCAGCACTTTCTCAG
AAAATCGTATAAAGTTCTAAGGGTTTCTTCCAACGACCCTGGTCCCCTGC
TACTCCTTATACAATTCAGTACAAAAAAGAATCCAGCTTTAAAATTAACT
TTATAACGTTCTGAAAAGTGAAACGGACATGATAACAGAAAAAGAATATC
GGGCCTTTATAAGAACGAATTTTGCTTCTaagaaaaatcatattttacaT
CGAAATAGTATTCCGAGGCTTgaggtttttataaaaacatgcaGGATCTA
AATTGTCGCTTTGTAAAGTCTTGATTGTGAAAGACATCCCTTAATATTCA
TTCTTCTTAACAGTCAAAAATGATTACTTCGATTTTAAGAGCGGTTTTTC
TTTCATATTCTAGTATATTTTTGTGTAGATAGAAACTTACCACTTTATTA
TCACAAACTTCATTATTTTTAGGAACTCCATTTATATAAAGATGACTTTG
ATTTgtaaaaagtatgaaaaaagaTTCGATTGCAGCACAAGAATTTTACA
TCTTTCACGATAATTAAAAAGCtattgatttttttgtattattCGAACTA
ATCCGTCAAAAAGAGATCCATCGTTAGCAAGG Run BLAST on NCBI protein sequence of TCONS_00012875-protein >TCONS_00012875-protein ID=TCONS_00012875-protein|Name=TCONS_00012875-protein|organism=Clytia hemisphaerica|type=polypeptide|length=603bp
MSSPELDRDRRSSSLNRNSGRYDGYNNNRQFSGRDRSNKGEVIARNFPFD
ATDREIKEEIFREIERFGNIIHVLVRGHDQNRKAYITFGEEDAARELKRF
CLERRMKISAFNRTLHFDFDGNDYRGGDFNRGGYQNRDNFQRNNFRNNDR
FNDRNDFNRGGRGNDFGKDRFNNDNHINPRATRTLFVGNLEPNITKEELM
RIFDKYGAIDDIDVKRPPNGIPPYAFIKYLELDAAACAKNQMFGGDIKGD
RHAFVEFESIDAASAAYTEMRGFPLGGPERKIKIDYAEIKRNDDRGGDRR
DFDNRNEDRDYNRGNRYGNENQSNYTTYRGRGGSNGNNYRDRDSEDRSDR
RRSRTRSRSPINGDRNESRGRNTPPGGASPQKTPIDNHPKSISEISKSSN
TEKPEKPVSNSVEPYDSSKPQESLVDIAKRFVVAWKGAFALKNSAFPVRM
HLIGGNPDIANFYLRGIGTGAGPAIKILNITQRLRLDQPKLDEVSRRVQQ
SGAGGHCMLLALPTGDEVELEVSYQRRPLKSLVTYFKKKEAAGVILMSSA
EGPEGKLEETGMLHAFPPCEFSQQQLLKAAPNAGADPLNEDHLVIVVVKG
TTS Run BLAST on NCBI transcript from alignment at sc0000157:93115..97240+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00012875 ID=TCONS_00012875|Name=TCONS_00012875|organism=Clytia hemisphaerica|type=transcript|length=4126bp|location=Sequence derived from alignment at sc0000157:93115..97240+ (Clytia hemisphaerica)
CcctttttactttcatttttacaatgaaatgataaaaagtatAATAGTTT
TGACATTAAAATTGCGTTCTTCGATTAAATGGATGATTTTGTCAGGTCTC
TCTTGTCTGTCATTAGCagctatttcaaattttcatttcaattttagaGA
TAAGACAAATGCGCATGCGTAAAAACTGTTGAGTTCATTGACCGATTACT
ATTTTCTCCCAACTATTTACCCGAATCGGACCGTGTGTAAACTCCATACT
CCATTGAGtaccgccattttgaatttcaaaagtgacCTGCTTCGCTTGGA
AGATCTACAAACAGCTACACATTGTCTTTCAGCTTTGATTTGTCGTGAAA
GTGgaagaataaatttaaaatctgTGCATcttttttagatgaaaaaataa
ttttacttaACTTATTAAGAATCGAAAATTATGTCGTCGCCTGAACTTGA
TAGAGATAGGAGGAGCTCCTCTCTAAACCGAAACTCTGGACGCTATGATG
GCTACAACAACAACAGACAATTTTCTGGACGTGATCGATCCAATAAAGGT
GAAGTTATTGCTAGAAATTTTCCCTTTGACGCTACTGATCGTGAAAtcaa
ggaagaaattttcagagaAATTGAAAGGTTTGGAAACATTATACATGTTC
TTGTTAGAGGTCATGATCAAAACCGAAAGGCCTATATCACATTTGGTGAA
GAAGATGCAGCTCGAGAacttaaaagattttgtttggaGAGACGTATGAA
AATTAGTGCATTCAATAGAACAttgcattttgattttgatggtAATGATT
ACCGAGGTGGAGACTTCAACCGTGGAGGCTATCAAAATAGAGATAATTTT
CAACGTAACAACTTCAGGAATAATGACCGGTTTAATGATAGAAATGATTT
TAACCGAGGAGGGAGAGGAAATGATTTTGGAAAAGACCGCTTTAACAATG
ATAATCATATCAATCCTAGAGCCACCAGAACTCTTTTTGTAGGAAATTTA
GAGCCAAATATTACGAAAGAGGAGCTTATGAGAATCTTTGATAAATATGG
TGCCATTGATGATATTGATGTTAAGAGACCACCAAATGGGATCCCTCCTT
ATGCTTTCATTAAGTATCTTGAGCTCGATGCTGCTGCCTGTGCTAAGAAC
CAAATGTTTGGCGGTGACATCAAAGGTAGACCAATTAAAGTTGGTTATGG
TAAAACCATGCCCTCTCCACGCTTGTGGGTTGGAGGCCTTGGTGGTTGGT
GTAATGCTGACATGCTAACTCGTGAGTTTGATAGATTTGGAGCTCTTCGA
AATGTTACTTTTATTAAAGGTGACCGTCATGCATTTGTTGAATTTGAGAG
TATTGATGCTGCTTCAGCAGCTTATACTGAAATGAGAGGATTTCCTTTGG
GGGGCCCTGAACGTAAGATAAAGATTGATTATGCTGAAATCAAACGTAAT
GATGATCGAGGAGGGGATAGACGTGATTTTGATAATCGTAATGAGGACCG
TGATTACAACCGAGGCAATCGTTATGGAAATGAAAATCAAAGCAATTACA
CTACTTACAGAGGGCGAGGAGGAAGCAATGGTAATAATTACCGGGATAGA
GATTCAGAGGATCGTTCTGATCGCAGGAGGAGTAGGACACGTAGTCGTAG
CCCAATCAATGGTGACAGAAATGAATCAAGGGGACGTAATACCCCACCAG
GAGGAGCCAGTCCACAAAAGACCCCCATTGATAATCATCCAAAATCCATA
TCAGAgatttcaaaatcttcaaatacaGAAAAACCTGAGAAACCAGTTTC
AAATTCAGTTGAGCCTTATGATTCATCAAAACCACAAGAAAGTTTAGTTG
ATATTGCTAAGAGATTTGTTGTTGCTTGGAAAGGAGCTTTTGCATTAAAG
AATAGTGCATTCCCTGTCCGTATGCATTTGATCGGTGGAAATCCTGATAT
TGCTAACTTTTACCTGCGTGGCATTGGTACAGGTGCTGGACCTGCCATAA
AGATTCTTAACATCACCCAACGATTGAGATTAGATCAACCCAAGTTAGAT
GAAGTTTCTAGACGTGTGCAACAGTCAGGTGCTGGTGGCCATTGCATGCT
TTTGGCTTTACCCACAGGTGATGAGGTTGAACTTGAAGTATCGTATCAAA
GAAGACCTTTGAAAAGTTTGGTGACTTactttaaaaagaaagaagCAGCA
GGTGTAATTCTAATGAGTTCAGCTGAAGGTCCAGAAGGAAAACTTGAGGA
GACTGGTATGCTTCATGCTTTTCCACCGTGTGAATTTTCACAGCAACAAT
TATTGAAAGCCGCTCCAAATGCTGGTGCTGATCCTTTGAACGAAGACCAT
TTAGTAATTGTTGTTGTTAAAGGAACTACTTCATGAAgtcttgatatctt
ttgatgattttgtttATTACGGCTGCTATATCGAATCTATAATTACCACT
TTTACATCGTGTTCATCTACCTAAGACGTTTATTTTTGCTTCTCAGAAAA
AAGACAGTATTATGGTATTACTGGTATTTTGTTTTGGAGAGTTTTGTTGC
TGGTTATTTGTGGACATTAATTCTACCCATTGAAAGCTACTGGATATGAG
ATATCTTTGATATTATCTTATTACTATAGTTTATTTTTAGGTCTTGTATT
TTGAGTCAACAAGAATTCTAGAAACTCAAATCTTAGCTTATGATTACGTG
CTGTAGAACTGCCTAATTTCATTCTACTTATATATTCTTCATAAACTCTG
TATTCGATTAACTTGAAAAAATTAGGTGGTTCGACCGTCACTTTTaagat
tttataattttgagattCTGAAAAGCAACCCATAAAGAGTTTTgctgaaa
ataataacaatctAAATAGGACTGTAGGTGCTGATTTGACACATAAGATC
TTTACTTCATTTTGCCCTGAATTTTCTTGACTTGCACTTCTTGAATATAA
ATTGCTGTTTCGTTTTCATCttaaaattattacaaaaattaATGTATGCT
TAGTAATTCTAAATTATTAGGATTAAAgtatttcatgatatttttaaTTT
GGAACTAATACTTCTAGAtactgatttttcttttgtgCTTGAAATTGTCC
TGAATGATGTAATGCGTCGCAGGTTTGGTTTTCCGGGCATCTTTTATGAG
TAGGAGTGATGGTTTAAAAGATCATTCGCTCTTCGCTCTTATTTTGCTTG
AGAGAAGCCTCGCCTCAAGGGAATAATGCGAGAATAAATGAATGCGACCG
ACCCttaaaaaattttatgttttgtggAATAAATCAATGCGAATTGCCCA
GGAATTTTGCGGAATTGATTAATTCGGAATagtgttttgaatgttttttt
ttccttttcaagaTATATACAGAACGAACTAAAAAAATTCcaacaaaata
taattttatttattCATCTTGTTTTTAGtcgatttaattttgcgaaaaag
gGCCAAATTCGCATTAATCAATTCCGCATTAATTTCTcctcgcattaatt
tattccctgAAAGGGAGGAGATTAGAATTTCAGCACTTTCTCAGAAAATC
GTATAAAGTTCTAAGGGTTTCTTCCAACGACCCTGGTCCCCTGCTACTCC
TTATACAATTCAGTACAAAAAAGAATCCAGCTTTAAAATTAACTTTATAA
CGTTCTGAAAAGTGAAACGGACATGATAACAGAAAAAGAATATCGGGCCT
TTATAAGAACGAATTTTGCTTCTaagaaaaatcatattttacaTCGAAAT
AGTATTCCGAGGCTTgaggtttttataaaaacatgcaGGATCTAAATTGT
CGCTTTGTAAAGTCTTGATTGTGAAAGACATCCCTTAATATTCATTCTTC
TTAACAGTCAAAAATGATTACTTCGATTTTAAGAGCGGTTTTTCTTTCAT
ATTCTAGTATATTTTTGTGTAGATAGAAACTTACCACTTTATTATCACAA
ACTTCATTATTTTTAGGAACTCCATTTATATAAAGATGACTTTGATTTgt
aaaaagtatgaaaaaagaTTCGATTGCAGCACAAGAATTTTACATCTTTC
ACGATAATTAAAAAGCtattgatttttttgtattattCGAACTAATCCGT
CAAAAAGAGATCCATCGTTAGCAAGG Coding sequence (CDS) from alignment at sc0000157:93115..97240+ >TCONS_00012875 ID=TCONS_00012875|Name=TCONS_00012875|organism=Clytia hemisphaerica|type=CDS|length=3624bp|location=Sequence derived from alignment at sc0000157:93115..97240+ (Clytia hemisphaerica)
ATGTCGTCGCCTGAACTTGATAGAGATAGGAGGAGCTCCTCTCTAAACCG
AAACTCTGGACGCTATGATGGCTACAACAACAACAGACAATTTTCTGGAC
GTGATCGATCCAATAAAGGTGAAGTTATTGCTAGAAATTTTCCCTTTGAC
GCTACTGATCGTGAAAtcaaggaagaaattttcagagaAATTGAAAGGTT
TGGAAACATTATACATGTTCTTGTTAGAGGTCATGATCAAAACCGAAAGG
CCTATATCACATTTGGTGAAGAAGATGCAGCTCGAGAacttaaaagattt
tgtttggaGAGACGTATGAAAATTAGTGCATTCAATAGAACAttgcattt
tgattttgatggtAATGATTACCGAGGTGGAGACTTCAACCGTGGAGGCT
ATCAAAATAGAGATAATTTTCAACGTAACAACTTCAGGAATAATGACCGG
TTTAATGATAGAAATGATTTTAACCGAGGAGGGAGAGGAAATGATTTTGG
AAAAGACCGCTTTAACAATGATAATCATATCAATCCTAGAGCCACCAGAA
CTCTTTTTGTAGGAAATTTAGAGCCAAATATTACGAAAGAGGAGCTTATG
AGAATCTTTGATAAATATGGTGCCATTGATGATATTGATGTTAAGAGACC
ACCAAATGGGATCCCTCCTTATGCTTTCATTAAGTATCTTGAGCTCGATG
CTGCTGCCTGTGCTAAGAACCAAATGTTTGGCGGTGACATCAAAGGTGAC
CGTCATGCATTTGTTGAATTTGAGAGTATTGATGCTGCTTCAGCAGCTTA
TACTGAAATGAGAGGATTTCCTTTGGGGGGCCCTGAACGTAAGATAAAGA
TTGATTATGCTGAAATCAAACGTAATGATGATCGAGGAGGGGATAGACGT
GATTTTGATAATCGTAATGAGGACCGTGATTACAACCGAGGCAATCGTTA
TGGAAATGAAAATCAAAGCAATTACACTACTTACAGAGGGCGAGGAGGAA
GCAATGGTAATAATTACCGGGATAGAGATTCAGAGGATCGTTCTGATCGC
AGGAGGAGTAGGACACGTAGTCGTAGCCCAATCAATGGTGACAGAAATGA
ATCAAGGGGACGTAATACCCCACCAGGAGGAGCCAGTCCACAAAAGACCC
CCATTGATAATCATCCAAAATCCATATCAGAgatttcaaaatcttcaaat
acaGAAAAACCTGAGAAACCAGTTTCAAATTCAGTTGAGCCTTATGATTC
ATCAAAACCACAAGAAAGTTTAGTTGATATTGCTAAGAGATTTGTTGTTG
CTTGGAAAGGAGCTTTTGCATTAAAGAATAGTGCATTCCCTGTCCGTATG
CATTTGATCGGTGGAAATCCTGATATTGCTAACTTTTACCTGCGTGGCAT
TGGTACAGGTGCTGGACCTGCCATAAAGATTCTTAACATCACCCAACGAT
TGAGATTAGATCAACCCAAGTTAGATGAAGTTTCTAGACGTGTGCAACAG
TCAGGTGCTGGTGGCCATTGCATGCTTTTGGCTTTACCCACAGGTGATGA
GGTTGAACTTGAAGTATCGTATCAAAGAAGACCTTTGAAAAGTTTGGTGA
CTTactttaaaaagaaagaagCAGCAGGTGTAATTCTAATGAGTTCAGCT
GAAGGTCCAGAAGGAAAACTTGAGGAGACTGGTATGCTTCATGCTTTTCC
ACCGTGTGAATTTTCACAGCAACAATTATTGAAAGCCGCTCCAAATGCTG
GTGCTGATCCTTTGAACGAAGACCATTTAGTAATTGTTGTTGTTAAAGGA
ACTACTTCATGAATGTCGTCGCCTGAACTTGATAGAGATAGGAGGAGCTC
CTCTCTAAACCGAAACTCTGGACGCTATGATGGCTACAACAACAACAGAC
AATTTTCTGGACGTGATCGATCCAATAAAGGTGAAGTTATTGCTAGAAAT
TTTCCCTTTGACGCTACTGATCGTGAAAtcaaggaagaaattttcagaga
AATTGAAAGGTTTGGAAACATTATACATGTTCTTGTTAGAGGTCATGATC
AAAACCGAAAGGCCTATATCACATTTGGTGAAGAAGATGCAGCTCGAGAa
cttaaaagattttgtttggaGAGACGTATGAAAATTAGTGCATTCAATAG
AACAttgcattttgattttgatggtAATGATTACCGAGGTGGAGACTTCA
ACCGTGGAGGCTATCAAAATAGAGATAATTTTCAACGTAACAACTTCAGG
AATAATGACCGGTTTAATGATAGAAATGATTTTAACCGAGGAGGGAGAGG
AAATGATTTTGGAAAAGACCGCTTTAACAATGATAATCATATCAATCCTA
GAGCCACCAGAACTCTTTTTGTAGGAAATTTAGAGCCAAATATTACGAAA
GAGGAGCTTATGAGAATCTTTGATAAATATGGTGCCATTGATGATATTGA
TGTTAAGAGACCACCAAATGGGATCCCTCCTTATGCTTTCATTAAGTATC
TTGAGCTCGATGCTGCTGCCTGTGCTAAGAACCAAATGTTTGGCGGTGAC
ATCAAAGGTGACCGTCATGCATTTGTTGAATTTGAGAGTATTGATGCTGC
TTCAGCAGCTTATACTGAAATGAGAGGATTTCCTTTGGGGGGCCCTGAAC
GTAAGATAAAGATTGATTATGCTGAAATCAAACGTAATGATGATCGAGGA
GGGGATAGACGTGATTTTGATAATCGTAATGAGGACCGTGATTACAACCG
AGGCAATCGTTATGGAAATGAAAATCAAAGCAATTACACTACTTACAGAG
GGCGAGGAGGAAGCAATGGTAATAATTACCGGGATAGAGATTCAGAGGAT
CGTTCTGATCGCAGGAGGAGTAGGACACGTAGTCGTAGCCCAATCAATGG
TGACAGAAATGAATCAAGGGGACGTAATACCCCACCAGGAGGAGCCAGTC
CACAAAAGACCCCCATTGATAATCATCCAAAATCCATATCAGAgatttca
aaatcttcaaatacaGAAAAACCTGAGAAACCAGTTTCAAATTCAGTTGA
GCCTTATGATTCATCAAAACCACAAGAAAGTTTAGTTGATATTGCTAAGA
GATTTGTTGTTGCTTGGAAAGGAGCTTTTGCATTAAAGAATAGTGCATTC
CCTGTCCGTATGCATTTGATCGGTGGAAATCCTGATATTGCTAACTTTTA
CCTGCGTGGCATTGGTACAGGTGCTGGACCTGCCATAAAGATTCTTAACA
TCACCCAACGATTGAGATTAGATCAACCCAAGTTAGATGAAGTTTCTAGA
CGTGTGCAACAGTCAGGTGCTGGTGGCCATTGCATGCTTTTGGCTTTACC
CACAGGTGATGAGGTTGAACTTGAAGTATCGTATCAAAGAAGACCTTTGA
AAAGTTTGGTGACTTactttaaaaagaaagaagCAGCAGGTGTAATTCTA
ATGAGTTCAGCTGAAGGTCCAGAAGGAAAACTTGAGGAGACTGGTATGCT
TCATGCTTTTCCACCGTGTGAATTTTCACAGCAACAATTATTGAAAGCCG
CTCCAAATGCTGGTGCTGATCCTTTGAACGAAGACCATTTAGTAATTGTT
GTTGTTAAAGGAACTACTTCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00012875-exon-sc0000157-1491911889:93115..94289 | TCONS_00012875-exon-sc0000157-1491911889:93115..94289 | Clytia hemisphaerica | exon |
| TCONS_00012875-exon-sc0000157-1510915933:93115..94289 | TCONS_00012875-exon-sc0000157-1510915933:93115..94289 | Clytia hemisphaerica | exon |
| TCONS_00012875-exon-sc0000157-1575043694:93115..94289 | TCONS_00012875-exon-sc0000157-1575043694:93115..94289 | Clytia hemisphaerica | exon |
| TCONS_00012875-exon-sc0000157-1491911889:94434..97240 | TCONS_00012875-exon-sc0000157-1491911889:94434..97240 | Clytia hemisphaerica | exon |
| TCONS_00012875-exon-sc0000157-1510915933:94434..97240 | TCONS_00012875-exon-sc0000157-1510915933:94434..97240 | Clytia hemisphaerica | exon |
| TCONS_00012875-exon-sc0000157-1575043694:94434..97240 | TCONS_00012875-exon-sc0000157-1575043694:94434..97240 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000157 | supercontig | sc0000157:93115..97240 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
BLAST of TCONS_00012875 vs. Swiss-Prot (Human)
Match: RB15B (Putative RNA-binding protein 15B OS=Homo sapiens GN=RBM15B PE=1 SV=3) HSP 1 Score: 145.591 bits (366), Expect = 3.232e-35 Identity = 90/223 (40.36%), Postives = 133/223 (59.64%), Query Frame = 2
Query: 1589 NHPKSISEISKSSNTEKPE-KPVSNSVEPYDSSKPQESLVDIAKRFVVAWKGAFALKNSAFPVRMHLIGGNPDIANFYLRGIGTGAGPAIKILNITQRLRLDQPKLDEVSRRVQQSGAGGHCMLL---ALPTGDEVE----LEVSYQRRPLKSLVTYFKKKEAAGVILMSSAEGPEGKLEETGMLHAFPPCEFSQQQLLKAAPNAGADPLNEDHLVIVVVKGT 2233
+H K + ++ T + E KP+ EP +K ++L + A+ + W G LKNS FP MH++ G+ + + L+ +G+ + L I QRLRLDQPKLDEV+RR++Q G+ +LL A P+G E +E QRR L++LV+Y K+K+AAGVI + G +G+ + TGML+AFPPC+FSQQ L A G L E+H+VIV+V+ T
Sbjct: 676 SHGKKARDSERNHRTTEAEPKPLE---EPKHETKKLKNLSEYAQTLQLGWNGLLVLKNSCFPTSMHILEGDQGVISSLLKDHTSGS--KLTQLKIAQRLRLDQPKLDEVTRRIKQGSPNGYAVLLATQATPSGLGTEGMPTVEPGLQRRLLRNLVSYLKQKQAAGVISLPVG-GSKGR-DGTGMLYAFPPCDFSQQYLQSALRTLGK--LEEEHMVIVIVRDT 889
The following BLAST results are available for this feature:
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