TCONS_00013000 (transcript) - C. hemisphaerica

Overview
NameTCONS_00013000
Unique NameTCONS_00013000
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1322

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00013000 ID=TCONS_00013000|Name=TCONS_00013000|organism=Clytia hemisphaerica|type=transcript|length=1322bp
TTAATCATATCATTATATCTTCGTAGACTTCGTAGGATATtcaaaaaaaa
cgtaaacaacTATATACAAGATGGGTAATTGTTTGTTTTCTTTGGGTTCA
TGGTTGATAGACACATTAGGTTTTGGAGTCAAACGAAGCAAAGTTCCCAC
AGATGACGAAGATGATGATCATATCGATCGAGATGAGATTGTTATCACCA
AAATTGAAGAAATGGAAGCATACTGCAAACCATTAATTTTCTTGCGATTC
TGCGGGCAGACAAGTAGTGCAACTGACACGGATACTAATGCAGAAAAAGG
CCCTCAAAATACCGGATCCTACCTCCAAATGTTGGATGCTTTGATTCGAA
CCCTCCCTAAAGATGAACTTAAAGAAGGATTCTGTCAAACCAAAGCTTTC
CAAGGTTTATTATGGAAGATTGCTGATCGAAGACATCGAGATGAAGAATC
TGAGCAGAGATGTTATAGGAGATTGCTAAGAGATTCCAAACGATTTGAAA
AAGTCTTCCTTGAACGTGCAGCCAAGAAAGCAGAAAATCAAGAAGAGCCT
TATTCAGAAGAACTACACGAACAACATGCTGAATACTGGGGCACGCGGCA
ACAATTATTGGCTGGTAAAGTCATCTGTGATTGGCTCTCAGAGGACGATC
AACCATCTATGGACCCTATCTACGGCGTCTTATTAAATCCAACTGCCGGC
CGCGTTGGGCCAGGTGATTCTGGTTTTGTCCATAGTTTATTATACGATAA
TTCCGGTGAATGGGCTCATCATTCGGCTGTTCACGATGCTTTTGgttatt
tgtttacatttcatCAACTTGGGCCGGGGTACAATTATATGTATCGATCG
TTTTTCGACGCAGATAATCCATTGGCTGGACAAATTTCTGGtattgattt
ttggaaaaaatatgtgGCTGAAGTTGAAACCAAACTTAAAGTCATTGAAA
ATTTCCGctcagtttgaaaaaacaaaattttgtagaTAGACTTTCTTTGT
ATcattatttgttaaaaaaacataattgaatttgtgtaaatataaACGCA
GAATTGTCAAACGTATTGAGcacttgcaatttttttggagtttaagtttt
gtaaaaactaatatTTTACTATGTCTTAGTTTCAAGTAAgttaacatttt
aaaagttgaaataaactttttgtcaaaacctttaatttaaatatttttgg
tgcaCTATGTCTCAGATGAGCACTTTGATATGCTAGTGCAgtacaaaatt
ttatttaacGGTGACTCAGCAAAATATATTGATCTTAAGCCTAAACTATT
TTGCGATCTATACATCCAAACC
Run BLAST on NCBI

transcript from alignment at sc0000161:114599..123703-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00013000 ID=TCONS_00013000|Name=TCONS_00013000|organism=Clytia hemisphaerica|type=transcript|length=9105bp|location=Sequence derived from alignment at sc0000161:114599..123703- (Clytia hemisphaerica)
TTAATCATATCATTATATCTTCGTAGACTTCGTAGGATATTCAAAAAAAA
CGTAAACAACTATATACAAGATGGGTAATTGTTTGTTTTCTTTGGGTTCA
TGGTTGATAGACACATTAGGTTTTGGAGTCAAACGAAGCAAAGTTCCCAC
AGATGACGAAGATGATGATCATATCGATCGAGATGAGATTGTTATCACCA
AAATTGAAGAAATGGAAGCATACTGCAAACCATTAATTTTCTTGCGATTC
TGCGGGCAGACAAGTAGTGCAACTGTAAGTACTGATTGATGATAACAAAC
TTGAACCCAGTCCCTTATTTCGTTCGTTTTTTAGATTGTAGCACTTCCAT
CAGTATAATCTAAAAGTTGTGGCTCTGAGTACGAGATTGTGATCTTTATA
CTCTGGATGTAATCACCCCTCACCCCGTTTTTTTTGTATACCTATATCTT
AGTTCCAATGACCCCCGATGATCCCTCTCAATTTCTTACATCCCTGTCTC
AGTTTTTTGGTGTAATCTTATTAGCTTTCTCCTATTTTTGTACCCCTATC
CCAGGTTCCTATTCATTTTCAATTCTTTTTGAAAATTAAATATTATTGTT
CTTACAATCTAGGACACGGATACTAATGCAGAAAAAGGCCCTCAAAATAC
CGGATCCTACCTCCAAATGTTGGATGCTTTGATTCGAACCCTCCCTAAAG
ATGAACTTAAAGAAGGATTCTGTCAAACCAAAGCTTTCCAAGGTTTATTA
TGGAAGATTGCTGATCGAAGACATCGAGATGAAGAATCTGAGCAGAGATG
TTATAGGAGATTGCTAAGAGATTCCAAACGATTTGAAAAAGTCTTCCTTG
AACGTGCAGGTATGAAATCAAATCAGTAGCGTGATGGCATGCCAGGGGGG
AGGGGTACCCCTTTGCTTTTTTAAACCTTAAAATTAGCAGTTTCAGTCAA
AAAGAGAAAAAAAAACAAAAATTGTCGTTTCGTCTAAAGATTTAACTTTG
CAAAGGGGAGCAAAAAAACAAAAACGAAAATTTCCTCTCCAGATTTGGTC
GACCCATAAGGAACACTATGATCAAATGTCCCATTTCGGACAATGATATT
GATGCATTCTACCCAATCAACGGATTAGAATAGGTGGATTAAGAACTCAT
AGAAAACACTCCTCGTTAGGTTATCAAACTTTTTTACGAGTTTGCTAGCA
ATTAAAACTTGATAAGTTGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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TAATTCCGTCTAAATTTTCGCCAAATTCCGCCACTCCGTCCGAAAAAAGG
GCCGATTCCGCTCCTCCGCCAACCATGAAACCCCCCCAAAAAACAATTCC
CATTTCCATCTTACACCTCCTAAATGTTAAGAACCGTACCCAACCCAGGT
TTTTAAATCTGATCGAAATTCGTTATCAATTTTTTATATTTAGCCAAGAA
AGCAGAAAATCAAGAAGAGCCTTATTCAGAAGAACTACACGAACAACATG
CTGAATACTGGGGCACGCGGCAACAATTATTGGCTGGTAAAGTCATCTGT
GATTGGCTCTCAGAGGACGATCAACCATCTATGGACCCTATCTACGGCGT
CTTATTAAATCCAACTGCCGGCCGCGTTGGGCCAGGTGATTCTGGTTTTG
TCCATAGTTTATTATACGATAATTCCGGTGAATGGGCTCATCATTCGGCT
GTTCACGATGCTTTTGGTTATTTGTTTACATTTCATCAACTTGGGCCGGG
GTACAATTATATGTATCGATCGTTTTTCGACGCAGATAATCCATTGGCTG
GACAAATCTCTGGTATTGATTTTTGGAAAAAATATGTGGCTGAAGTTGAA
ACCAAACTTAAAGTCATTGAAAATTTCCGCTCAGTTTGAAAAAACAAAAT
TTTGTAGATAGACTTTCTTTGTATCATTATTTGTTAAAAAAACATAATTG
AATTTGTGTAAATATAAACGCAGAATTGTCAAACGTATTGAGCACTTGCA
ATTTTTTTGGAGTTTAAGTTTTGTAAAAACTAATATTTTACTATGTCTTA
GTTTCAAGTAAGTTAACATTTTAAAAGTTGAAATAAACTTTTTGTCAAAA
CCTTTAATTTAAATATTTTTGGTGCACTATGTCTCAGATGAGCACTTTGA
TATGCTAGTGCAGTACAAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNGTGCGCAGAGTCATTTACAGATTTTTCTTGTAACAATGAGAAGACA
ATGGATCTCTCTTGGGAGCAACGAGAGAAGTTAATCCACCTATTCTAATC
CGTTGACCCAATATACTTTGAAATTGAGATCTGCAATTCAGTTTCGAGAA
GAATGAATTTGAAAAACGAGTCAAAACACTCATCGTTATTGACACATGAA
TTCTACTAAATAATGAAACTTGAAACTTTCTTTTGGGCTCTTAATAATAA
GAGGGTACGCAGTAAGGCATCAATTATTTGAAAGATGACTGCTAGACCAT
GACGTTTAACCATTTATTCAGACAGAAAAACCCTTTCACCCTTTCATTTT
ACGGGCTGAAGAGATGCTGCAGTGAATAAATTTTGATAAATTATGTCCCG
ATTGATTCCGAGAGCAGCTCATACTGTATTAACGCTTGAAAACTGAAGGG
GATTCGATCATTATGGTAATGGTTTTACCTTTTATAAAAACACCAAATTA
AAAAACAAGTTTACAGCTTTGGATAATACAGATTATATTCTAAATAGTTT
TATGCAACGTGGAGCCATCATGCGGTTAAATTCGTACAGACAGAATAAAC
TTTGGACGATAATTGTTGTTCATCTTTTTATGCACGTAGAAGGGAAATAG
ATTTAATCAATCATAAAAATACCGCTTAATTGATTCATAGTGCATTATAA
AAACACTGGTCTGGAAGGCTTTTTATTGTTAAAAGATCGAGCTTACGTAC
CAAACCGATTTATTTTGCAAACTTTTTGATCATGTGATTTGAGAAAATAG
ACCAATCCTGTAAATCGCAACTTGTCTTTTGTTTGTAACAAAAGATAATT
GAACAAAAAGCCAAAACAATACATTGCCAGACAGGTTATTTATAATGACT
ATGATTGATTACACGCTTTCTTTTTTTAATAAGAGAGCTGGTTTTTTTCA
TTTCATGATGGATATTCTTAACTTTTTGGGGAAAAATTATCCTAAAATAT
TCTTAAGGTGCACTTTATTTCAAAGAACAATTTTATAAGAACAATGAGGC
TCAAAATCCACAATTTACAATAGACGATATCGGCTTTCTAAATTCTCCCC
GAATGATTACCCATGATGCATTGTTAGGGTTTGGGTTATCGTCCGTGAAT
TTTTTTGCGCAATGCATCATGGGTAATCATTCGGGGAGAATTCGGTAAAG
TCGATATCGTCTATTCTTAGGAAAAATGCTGTAAGAGTCGGCATTCTTAG
GTTCAGTTGCCGAATTTAATGATGGTGATAATCTTAGCATATTTCTAATT
TTTGGGCTAATTTCATCATGAATATTCTTATAAAAAAGGCGTGTACTTTA
GTTTCCAGACATTTCTAAGTTAATGGATAGGCTGGTTTATTGCAAGCTGA
ACAGTCGTTTCTTCCCTTTGGATTAAATAGGAAATAGCATGTTTAATAGA
TGCACTAATCCTATGAACTAGGCTAATGTTTATTACAAAATTCCATGCAA
TCAAACACTTATTTGAAAAAATCGGCCGGGTCAACTACAGTAATACAGTG
ATCTTTTCTCTATAGGATGCCCTTTTCATCAAGATTTGAAGGATTTAGAA
ATTTGAGTAGACTTGAGGGTCTCATATTTATTCACAAACTGTGGTAACCA
TTTTCAAAAAAAGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNACACCTCCTAAATGTTAAGAACCGTAC
CCAACCCAGGTTTTTAAATCTGATCGAAATTCGTTATCAATTTTTTATAT
CTAGCCAAGAAAGCAGAAAATCAAGAAGAGCCTTATTCAGAAGAACTACA
CGAACAACATGCTGAATACTGGGGCACGCGGCAACAATTATTGGCTGGTA
AAGTCATCTGTGATTGGCTCTCAGAGGACGATCAACCATCTATGGACCCT
ATCTACGGCGTCTTATTAAATCCAACTGCCGGCCGCGTTGGGCCAGGTGA
TTCTGGTTTTGTCCATAGTTTATTATACGATAATTCCGGTGAATGGGCTC
ATCATTCGGCTGTTCACGATGCTTTTGGTTATTTGTTTACATTTCATCAA
CTTGGGCCGGGGTACAATTATATGTATCGATCGTTTTTCGACGCAGATAA
TCCATTGGCTGGACAAATTTCTGGTATTGATTTTTGGAAAAAATATGTGG
CTGAAGTTGAAACCAAACTTAAAGTCATTGAAAATTTCCGCTCAGTTTGA
AAAAACAAAATTTTGTAGATAGACTTTCTTTGTATCATTATTTGTTAAAA
AAACATAATTGAATTTGTGTAAATATAAACGCAGAATTGTCAAACGTATT
GAGCACTTGCAATTTTTTTGGAGTTTAAGTTTTGTAAAAACTAATATTTT
ACTATGTCTTAGTTTCAAGTAAGTTAACATTTTAAAAGTTGAAATAAACT
TTTTGTCAAAACCTTTAATTTAAATATTTTTGGTGCACTATGTCTCAGAT
GAGCACTTTGATATGCTAGTGCAGTACAAAATTTTATTTAACGGTGACTC
AGCAAAATATATTGATCTTAAGCCTAAACTATTTTGCGATCTATACATCC
AAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007288XLOC_007288Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00013000-exon-sc0000161-1575043694:123430..123703TCONS_00013000-exon-sc0000161-1575043694:123430..123703Clytia hemisphaericaexon
TCONS_00013000-exon-sc0000161-1575043694:122845..123091TCONS_00013000-exon-sc0000161-1575043694:122845..123091Clytia hemisphaericaexon
TCONS_00013000-exon-sc0000161-1575043694:114599..115399TCONS_00013000-exon-sc0000161-1575043694:114599..115399Clytia hemisphaericaexon
TCONS_00013000-exon-sc0000161-1510915933:123430..123703TCONS_00013000-exon-sc0000161-1510915933:123430..123703Clytia hemisphaericaexon
TCONS_00013000-exon-sc0000161-1510915933:122845..123091TCONS_00013000-exon-sc0000161-1510915933:122845..123091Clytia hemisphaericaexon
TCONS_00013000-exon-sc0000161-1510915933:114599..115399TCONS_00013000-exon-sc0000161-1510915933:114599..115399Clytia hemisphaericaexon
TCONS_00013000-exon-sc0000161-1491911889:123430..123703TCONS_00013000-exon-sc0000161-1491911889:123430..123703Clytia hemisphaericaexon
TCONS_00013000-exon-sc0000161-1491911889:122845..123091TCONS_00013000-exon-sc0000161-1491911889:122845..123091Clytia hemisphaericaexon
TCONS_00013000-exon-sc0000161-1491911889:114599..115399TCONS_00013000-exon-sc0000161-1491911889:114599..115399Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000161supercontigsc0000161:114599..123703 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00107182	0.137176	4.5266	40.1766	2.39053e-09	0	0.229103	2.13561e-08	0.182165	3.98771e-08	4.58334	0.44218	2.84627e-09	0	0.834697	0.253606	0.002252	0.340102	6.00435	5.32199	3.6912	3.56504	0.0903006	5.17196	5.13065e-08	0	10.3349	10.9848	0.697904	0.000747881
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00013000 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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