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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00014226 ID=TCONS_00014226|Name=TCONS_00014226|organism=Clytia hemisphaerica|type=transcript|length=2630bp
ATAATTTGTAGTGAGTCTGCCCAGGGTGGACGATTCACTGATCCAGGCAA
CATGGGTGTTACACGTGACTATTCTGGGTATAAATATGAGTTGTTCACTT
GACCAAAGCATCACTTTTGAAGGAGTTCTGAAGACTCGCACATTAGCTGA
TATACATCTACCACCTCACAAAGTAAGTCACATTACATATCTCTTTTTAC
GCAATATGTTCCTCTATTTTTCCAACAGTGTCCTCTTACTGAGCTACTTT
GAAATCAATGGGTTTGAAGCAAGTTTCAACCTTTTAATCATCTATACCAG
AGATTGGTGCGAGTTTACCAGGAAGGGATGATCAGAAATCTCAGTCTAAG
AGAATTAATGCAACAACTTCAGATATCAATGAGATCAATTAGTGTGGTCA
ATCCTACCTGGTAAACTACAACCCAGTCTACACATAGTAAcagcaaaatt
caaaaaaaatctttcgcaATGTGGTTCTAGAATGGACATGAGCTCATTCA
ATGTTGGCGCTCTGATTTTCAACAAAGAACTTCCTTTTGTCGTGGAAGTT
GATTTTGACATTGATGATCACAAATTCTCCATTCGTGGCAAAGGTGTTGG
CAATGCTGAGAAAGGATTGATGGTTGGCAAATATGTTGTTTCCGAAGGTG
AATTACCATGCTCATGGTCAGCAATCACTCATAATTTCCAATACGGACAA
GTTTGTTTCACCCGTTACCCAAAAGATATACCTGACCACATCAAGAGTCT
GTTCCCAGAGGGTTACGTCCAAACACGACACAGTCATTTTGTCGATGATG
GAGAGTATACGTCCGTACATACGTTAACGTACGAAAACGGAGTGATTTAC
AACCGCGTCAAAGTTAACGGTGGCGGTTTTAAACCCGATGGTAATGTTTT
TGGCAAACGTCTTCGGGAAGTGGAACCTGATATCTGTTCAGTCTATTTCC
CGGGAAAAGATGGATACAACTGTGAATTTGTCAAGCTTTCGGAGACGGTA
GATGGCGATTATCAAGCAATCCGTATTGACCAAGTGATCAGACCTCTTTC
AGACGGACCCTCCCTTCCAATGACCAAGCTTTATCATCATTACAAATTCG
AATACAGTAAGGATGCCAACGAAACGAGGGAACACATCATCATGAAGGAA
CAAGTCCACGCTAGTCACCATACCTCTAAATAATGAGATATCAACTTTTA
TTATTGGATTCTCAAGTTTAATGGTTGTTTGTCATTAATTATATGATATT
GAAGTTTTATATATCTATTATAATCTGCTTGATTCATACTTTATTTTCAT
AgttgaaataaattttatatattttgcacATGCTTATTGGAATTAAAATG
TTTCATACGCCTCAAAAATTATTCCACCGTCAAATATCTACCCGAAATTT
TGTGACAAGATTGAAACAGCCTACTCTGAATTTGTACTAAAATTccttta
attaaaaatttgtacgtaaaaatctcaaaaagggcgttttttaaaaacat
tcggTAGAGTCTATTCCACGGTCAAAgggaatcatgggtaatcaggaccc
cGCGCTCAAATAAAAATTCtacgccccctcaaataaacacTCTACGCCTC
CTTTAGCATGTAGCTATTAGTATAATATCAAGAAAAGTGGATCTAGTAGT
CTTCTAACTGATTTTGACCCGTTGCTACATTGACATTTGTACTCCAACAA
TAATAAAAAGGCAGAATGGGGTTCCCAGTCACACGGTATAACATTTATGA
CATTATGATTTTGAAAAGCTAAATGCTTTCAATCTTCTTAGATGTACAAA
TACATTCCTGTTTCTAATCTCGAGTTGGTGTTGAAAACCCAATGATTGGG
TGTGAATCTTTATAGAAGAGAAATTGTTTGTGttgaaactttgaataaaa
agcCTTCAATTCTTATTTAGAATTGTTCTGAATCTTGTTCTGAAGCTTGG
TGCTCATGCCACGCCCTATTTTGATATCTGTTGAACATAATAATCGATAG
AAGGTATTTTCTTGAGCACTAGAgtttataatcaaatcaaatataATTAT
AACCGAAAAATCGTTGTTTCTCTGGTGCAACATTTTACCCACCAGCAGGG
ATGATAAAACTTATTATGTTAgctacagcacctgaccccgaggatgtagg
tgaaattttaatcagacctgaaagatgtagatttgcattaaaaaaaatat
tatatgttttcaacgaaattttgaacccccaaaatcctttcccaggggct
agtttcattacttttgatagataggctaatttttttggtctttgAAGTTG
ACTCtcattttcgttataacccccagaatgtaggtttggttttatggctt
taaatctagtatcagtaaaatgttgatattttttcaattggattaaTTAT
AACCGtagattttagaaatatttcatgCCAAAACAATCCTCTAAAGAGCT
TTTTGTtgttctgaaaattggatttttttactttttaacccccagaatgt
aggtgaaaagattcggttgtcGAGAGAAGAATTTCAGTACTCATCGGAAA
tttttgttctctaagtgaaattcgtACTTTAGAAATTtactctgacaaaa
aattaacaaagatattaattttatcgtgct Run BLAST on NCBI transcript from alignment at sc0000183:105091..108814- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00014226 ID=TCONS_00014226|Name=TCONS_00014226|organism=Clytia hemisphaerica|type=transcript|length=3724bp|location=Sequence derived from alignment at sc0000183:105091..108814- (Clytia hemisphaerica)
ATAATTTGTAGTGAGTCTGCCCAGGGTGGACGATTCACTGATCCAGGCAA
CATGGGTGTTACACGTGACTATTCTGGGTATAAATATGAGTTGTTCACTT
GACCAAAGCATCACTTTTGAAGGAGTTCTGAAGACTCGCACATTAGCTGA
TATACATCTACCACCTCACAAAGTAAGTCACATTACATATCTCTTTTTAC
GCAATATGTTCCTCTATTTTTCCAACAGTGTCCTCTTACTGAGCTACTTT
GAAATCAATGGGTTTGAAGCAAGTTTCAACCTTTTAATCATCTATACCAG
AGATTGGTGCGAGTTTACCAGGAAGGGATGATCAGAAATCTCAGTCTAAG
AGAATTAATGCAACAACTTCAGATATCAATGAGATCAATTAGTGTGGTCA
ATCCTACCTGGTAAACTACAACCCAGTCTACACATAGTAACAGCAAAATT
CAAAAAAAATCTTTCGCAATGTGGTTCTAGAATGGACATGAGCTCATTCA
ATGTTGGCGCTCTGATTTTCAACAAAGAACTTCCTTTTGTCGTGGAAGTT
GATTTTGACATTGATGATCACAAATTCTCCATTCGTGGCAAAGGTGTTGG
CAATGCTGAGAAAGGATTGATGGTTGGCAAATATGTTGTTTCCGAAGGTG
AATTACCATGCTCATGGTCAGCAATCACTCATAATTTCCAATACGGACAA
GTGTAAGTAGAGCTTTATTTTAATCGTACCACAACTCTACTAGTGTCAGG
TCCTTCACAATGTGAGCAAAATTGACTAGCTTAATTGTTAATTTGATCTA
GATGGAATTTAAAGCTCGTTGGATAGAGTAGGACCTATCCTTTTCATTTT
GGGTGCTTTGATTTAAATATTAGCACAGAAAGAGTTAAATATAATGTGTA
AAACAAATCTTGGAAAGTTTCTCATTTACAAACGCCAATGGTGCATTATT
ACACTATTATGAAAAAAGAATTATGTGTTTAAAAAAGACTTTTCAAGGTC
ACTTAGACTCAATCGAAAATGTCAATTTTAAATTTTAAATTTTCTCTTTC
CCACGTTTTTAGTTGTTTCACCCGTTACCCAAAAGATATACCTGACCACA
TCAAGAGTCTGTTCCCAGAGGGTTACGTCCAAACACGACACAGTCATTTT
GTCGATGATGGAGAGTATACGTCCGTACATACGTTAACGTACGAAAACGG
AGTGATTTACAACCGCGTCAAAGTTAACGGTGGCGGTTTTAAACCCGATG
GTAATGTTTTTGGCAAACGTCTTCGGGAAGTGGAACCTGATATCTGTTCA
GTCTATTTCCCGGGAAAAGATGGATACAACTGTGAATTTGTCAAGGTACT
GAAATTTTGTCAATTCTAGTAATTTCAGATACAGTTCTACAGGGGTCTTA
TTTAGGCCCGGCGAACGGCACGAAAAGGCACGAAAAAATTACAATTCGCC
GTTCGAAAAATTCAGTTCACCATCTAAAGTACATATTTACGCTAATCAAT
GCACTGCGCTTGCTAAAAATTCGCCGGCCTAGAATCTAGAAATCGCCAGA
GTTAATTCTTCATTCGCCAGCCTTCCAAAAACAAAGCAAAACCCCTGGTC
CTAGCATCTTTCAGGAAAATATTTTATATCTGTGGAGATTAACTGGCAAT
AATTCAGTTTCAGTTGAATGTTTGAGATGAGAATAGACTGCCATGTTCGC
TAAGAGGTTTTTTTGAATAAATTTTGAATTGAGAAATTTTGTTAGTACAG
TGGTGCAAAAAAAATNTCGATAAGAGGTTTTTTTGAATAACTTTTGAATT
GAGAAATTTTTTTAGTACAGTGGTGCAAAAAAAACGCATTTTATAACCAG
TAGCGTGGTGGGTCGACTAAAATTCGGCCAAACCGAAATTAGTAATCAGA
GACTTTTTACACCCTATGTATTTCGGTGCCCCCAAAGTAATTTGGCCGTT
GGGGCCATCACGCTACTGTTTATAACATGTGTATGACCAAAGTTTAAGAT
TAGAAAATCTATATAAAAAGAGCTGAAACCTGTAAATATGTAGTCATCAT
ATTCTGGTTTATATCCTTATCTTTCACAGCTTTCGGAGACGGTAGATGGC
GATTATCAAGCAATCCGTATTGACCAAGTGATCAGACCTCTTTCAGACGG
ACCCTCCCTTCCAATGACCAAGCTTTATCATCATTACAAATTCGAATACA
GTAAGGATGCCAACGAAACGAGGGAACACATCATCATGAAGGAACAAGTC
CACGCTAGTCACCATACCTCTAAATAATGAGATATCAACTTTTATTATTG
GATTCTCAAGTTTAATGGTTGTTTGTCATTAATTATATGATATTGAAGTT
TTATATATCTATTATAATCTGCTTGATTCATACTTTATTTTCATAGTTGA
AATAAATTTTATATATTTTGCACATGCTTATTGGAATTAAAATGTTTCAT
ACGCCTCAAAAATTATTCCACCGTCAAATATCTACCCGAAATTTTGTGAC
AAGATTGAAACAGCCTACTCTGAATTTGTACTAAAATTCCTTTAATTAAA
AATTTGTACGTAAAAATCTCAAAAAGGGCGTTTTTTAAAAACATTCGGTA
GAGTCTATTCCACGGTCAAAGGGAATCATGGGTAATCAGGACCCCGCGCT
CAAATAAAAATTCTACGCCCCCTCAAATAAACACTCTACGCCTCCTTTAG
CATGTAGCTATTAGTATAATATCAAGAAAAGTGGATCTAGTAGTCTTCTA
ACTGATTTTGACCCGTTGCTACATTGACATTTGTACTCCAACAATAATAA
AAAGGCAGAATGGGGTTCCCAGTCACACGGTATAACATTTATGACATTAT
GATTTTGAAAAGCTAAATGCTTTCAATCTTCTTAGATGTACAAATACATT
CCTGTTTCTAATCTCGAGTTGGTGTTGAAAACCCAATGATTGGGTGTGAA
TCTTTATAGAAGAGAAATTGTTTGTGTTGAAACTTTGAATAAAAAGCCTT
CAATTCTTATTTAGAATTGTTCTGAATCTTGTTCTGAAGCTTGGTGCTCA
TGCCACGCCCTATTTTGATATCTGTTGAACATAATAATCGATAGAAGGTA
TTTTCTTGAGCACTAGAGTTTATAATCAAATCAAATATAATTATAACCGA
AAAATCGTTGTTTCTCTGGTGCAACATTTTACCCACCAGCAGGGATGATA
AAACTTATTATGTTAGCTACAGCACCTGACCCCGAGGATGTAGGTGAAAT
TTTAATCAGACCTGAAAGATGTAGATTTGCATTAAAAAAAATATTATATG
TTTTCAACGAAATTTTGAACCCCCAAAATCCTTTCCCAGGGGCTAGTTTC
ATTACTTTTGATAGATAGGCTAATTTTTTTGGTCTTTGAAGTTGACTCTC
ATTTTCGTTATAACCCCCAGAATGTAGGTTTGGTTTTATGGCTTTAAATC
TAGTATCAGTAAAATGTTGATATTTTTTCAATTGGATTAATTATAACCGT
AGATTTTAGAAATATTTCATGCCAAAACAATCCTCTAAAGAGCTTTTTGT
TGTTCTGAAAATTGGATTTTTTTACTTTTTAACCCCCAGAATGTAGGTGA
AAAGATTCGGTTGTCGAGAGAAGAATTTCAGTACTCATCGGAAATTTTTG
TTCTCTAAGTGAAATTCGTACTTTAGAAATTTACTCTGACAAAAAATTAA
CAAAGATATTAATTTTATCGTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00014226-exon-sc0000183-1575043694:108113..108814 | TCONS_00014226-exon-sc0000183-1575043694:108113..108814 | Clytia hemisphaerica | exon |
| TCONS_00014226-exon-sc0000183-1575043694:107470..107752 | TCONS_00014226-exon-sc0000183-1575043694:107470..107752 | Clytia hemisphaerica | exon |
| TCONS_00014226-exon-sc0000183-1575043694:105091..106735 | TCONS_00014226-exon-sc0000183-1575043694:105091..106735 | Clytia hemisphaerica | exon |
| TCONS_00014226-exon-sc0000183-1510915933:108113..108814 | TCONS_00014226-exon-sc0000183-1510915933:108113..108814 | Clytia hemisphaerica | exon |
| TCONS_00014226-exon-sc0000183-1510915933:107470..107752 | TCONS_00014226-exon-sc0000183-1510915933:107470..107752 | Clytia hemisphaerica | exon |
| TCONS_00014226-exon-sc0000183-1510915933:105091..106735 | TCONS_00014226-exon-sc0000183-1510915933:105091..106735 | Clytia hemisphaerica | exon |
| TCONS_00014226-exon-sc0000183-1491911889:108113..108814 | TCONS_00014226-exon-sc0000183-1491911889:108113..108814 | Clytia hemisphaerica | exon |
| TCONS_00014226-exon-sc0000183-1491911889:107470..107752 | TCONS_00014226-exon-sc0000183-1491911889:107470..107752 | Clytia hemisphaerica | exon |
| TCONS_00014226-exon-sc0000183-1491911889:105091..106735 | TCONS_00014226-exon-sc0000183-1491911889:105091..106735 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000183 | supercontig | sc0000183:105091..108814 - |
Blast
The following BLAST results are available for this feature:
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