TCONS_00014227 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014227
Unique NameTCONS_00014227
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1312

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014227 ID=TCONS_00014227|Name=TCONS_00014227|organism=Clytia hemisphaerica|type=transcript|length=1312bp
GAGAAAACAGTACAAAAACTTCGTTTAAAATGACACAAAGTGGAATATGG
CGAAGGAGTTTGTTCGTATCATGTTTCATCGGACACTGTTTGTATTATGT
AACCAGAAAATCGTTAACATTTTCAGTTCCCATTCTAATGGAAGATTCCA
CGATGAGGATGACTAAAAGAGATTTTGGTCTGATGGCTAGCCTACAAATG
ATCACGTATTCGATCGGGAAATTCTTAACTGGATTCTTAGTGGATCAATA
CAGTAATAAGAAGATTTTTTGTTTCGGTTTGTTTTGTTGTGGATTGACTA
ATCTGGCTTTCAGTGCTGTTGGAGAGAAAAATATGTTCTTTTGGATTGTA
CTTGCCAATGGATTCTTTCAAGCTTTTGGATGGAATGCTATTGCTGTTCT
GGTCAACCAATGGTACAACAAAGCGGAGATTGGGACCGTCTGGTCGCTCC
TCTCTTCCACCATCAATATCGGTACCAGCATCACTCCATTCATTATCATG
GTCATCACCAAAGATCATCATTGGAAAACGTGTTTCTTCATCATTGGTAG
TATCACCTGTGTTTTTGCCCTCATTGCAACAGTAACCATCAAGGAGTACC
AAAAACCGCTACCAGGGCTGTCAGACACCACCAAGTCTTCAGAcgataaa
aataaacaatcagGAGTATCTTCCTCGACTAAAGTTGGAAATACAGCAGA
TACTAATATCTCCAAAAGCTCAGATTCTTCACAGACAATATCAACAAAAA
ATGAAGGCACCGGCTCCACACCAACTTCTTCACCGTTCACTCTTCTCTTC
ACCAGTCCGGTGTTTTGGTTGATAAGTAGTTGTTATTTGCTGTGGTCACT
GGTCAAAGTAGGATCTGAAGATTGGTTGCAATTGTATCTGCTGACTGGCA
AATCCTCGTCGCAAACTGAAGGTAGGGAAAGACCGCTCTTTAAGTTAGTA
AGACTGCGACTGCGTCGGAGGCGTCCCGAAGACTCCACTTTCGATGGCTA
TCGACCCGAAGGTAGGGAGGGTGGCAGTATTTGTCCCTGGAttactccac
ttacccttgatcattCTTTTAATTGCTAAGCATCAAGTAGAGAGGCAtcg
agtaccattttggaaaccTTTGGTATGACTCGGCTGAGTGTTGAATCCAC
AACCTTGTGCACAGTAGgaggatgctctaccactgcattACAGTTACTTA
CCGCTCTTTACCAACGCTCATTTATATAGACTGCTGgaatccactaacgg
attcctgctccttatactacatacagttttgtagaggtctgtgattcaga
cttACCATTTAC
Run BLAST on NCBI

protein sequence of TCONS_00014227-protein

>TCONS_00014227-protein ID=TCONS_00014227-protein|Name=TCONS_00014227-protein|organism=Clytia hemisphaerica|type=polypeptide|length=358bp
ENSTKTSFKMTQSGIWRRSLFVSCFIGHCLYYVTRKSLTFSVPILMEDST
MRMTKRDFGLMASLQMITYSIGKFLTGFLVDQYSNKKIFCFGLFCCGLTN
LAFSAVGEKNMFFWIVLANGFFQAFGWNAIAVLVNQWYNKAEIGTVWSLL
SSTINIGTSITPFIIMVITKDHHWKTCFFIIGSITCVFALIATVTIKEYQ
KPLPGLSDTTKSSDDKNKQSGVSSSTKVGNTADTNISKSSDSSQTISTKN
EGTGSTPTSSPFTLLFTSPVFWLISSCYLLWSLVKVGSEDWLQLYLLTGK
SSSQTEGRERPLFKLVRLRLRRRRPEDSTFDGYRPEGREGGSICPWITPL
TLDHSFNC
Run BLAST on NCBI

transcript from alignment at sc0000183:112726..116976-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014227 ID=TCONS_00014227|Name=TCONS_00014227|organism=Clytia hemisphaerica|type=transcript|length=4251bp|location=Sequence derived from alignment at sc0000183:112726..116976- (Clytia hemisphaerica)
GAGAAAACAGTACAAAAACTTCGTTTAAAATGACACAAAGTGGAATATGG CGAAGGAGTTTGTTCGTATCATGTTTCATCGGACACTGTTTGTATTATGT AACCAGAAAATCGTTAACATTTTCAGTTCCCATTCTAATGGAAGATTCCA CGATGAGGATGACTAAAAGAGATTTTGGTCTGATGGCTAGCCTACAAATG ATCACGTATTCGATCGGGAAATTCTTAACTGGATTCTTAGTGGATCAATA CAGTAATAAGAAGATTTTTTGTTTCGGTTTGTTTTGTTGTGGATTGACTA ATCTGGCTTTCAGTGCTGTTGGAGAGAAAAATATGTTCTTTTGGATTGTA CTTGCCAATGGATTCTTTCAAGCTTTTGGATGGAATGCTATTGCTGTTCT GGTCAACCAATGGTACAACAAAGCGGAGGTTTCTCCTAAATTTTATTGTT TTGATCCCTTTTTAGACCCTGGAGATCCTACAAATTAACCCTTGTCCGTC CCCGCCCGTTCGTCTGTTACTATCTTTCCAGCTTTTCTATTTTTTTTGCA CAAAGACAGAGGGCAAGGTCTTTAGAAAGTGGCTGAGTATTGTTTTTTTC TATTTCTATTACATTAGCCTTCAGGTAGGTCCATTCAGTATGCAGATTTT TCATAAAAGCTCAGTCGGTTCACTTTTAGGTATTTTTAGTTGATATCATG CTGAATGTTTTAAAGTAAGTCTTTGAAAAAGCGGAAAGTAATTTGTATCC TTATAATGGATCTCAACTTTGTTTTCCGAAAACCCACTTTAATTACTTTG GGACTGGAATATCTATTTCTCGAACAAAGAATTTCCACCTTATTTCACTT ACTCATCGATTTACAGTACATAATGAGTTTGAATGGTTTTTTTATAAACG GTCAGGGTGAAATATTATTTTAATCATCTTGGCAATCGAAATATTATCTT GAAGTTGAATATGCAAAAACTGAAATAATAACAAGGGACTTGAAATGCTT TTATGAATCCCCGAGAGGTACTAGGTTTGTCGGAAGACGGGTGGTTGCCG CCGGATTTTCGAAAATCGTATGTTTTGTACAACCCTTAACGGGAATTTAA GAATCTAAAAATTAAGCACCCTTAAGACCAGCATCACTGTGCACTTCGTT TGTCTAGGTACCCCCGGATCTCTAAAGAGTATCTTTTATGGATTTAGGAT TTTTATGATAGGGATAAAAATTAATTAGACGCGTTTGAATTCTTATCTTT TTATTTTGTTCTTTACGAATTCCCCAAATAAATGCTCAAAAATATCAAAG AAAGTTAAAGATTTGTCAAGGACTGTAAATTCAAGTAAAAAACATTCACT CGGAGAATTGTAAAAATCTTTTATTTTTATATTCAAAGTTATATTCTCAA AATTTAAAATAAATGGCACTAAAACTTTAGTCCACAGCCTTTACCCTTAA AGGTAAAAATCAAAATGCTTTAAAAATGAATAAAAATTGCCAAAATATAT CGAATGTCAAAAATCCTTAAAAGTATCTCAAAATATTTAAAAACTTCGTA AACCTCCCCATCCAGTATTCACCTCTCGTATGCTTTCATAATTTTGACAT ACCTTGCTTAAAACCCAATACAGTACTAAATGATACATAACTCTTTCCCT TTTCATTGCGAGGTTGTTTTACATAACTCGATGAAAAAACATTAATTTGT TTGGCTTTACGTTTGATGAAATACCACAGTGAATGCCCTAATCCATTGTT ACGATGTTTTGGGTCCACATACAATGAACCAATTTCACCAGCGTAAGTTA GGGAAATCCAACCAACTAACTTGTCGGAATATTTTGTAAAAATACCTGGG AATAAGCCGAATAACAAACTAATTTTAAGCTGGTCGCTTCGTAAAATGGG TTCTCGTCCAAACTGCTCTCTTAAATTCTCTACAACTGACTCATTAAAGT GTTCAATTGTAAGCGGCTTTATGTAATAATCGTGATGTACGGAAAAATCG TCCTTAGAGGTTCTAGATTCAATGATATTTTCGGCAATTCCAAAATAGTA GTTGAATACAAATCTGGTGTCTCTCTCTCCTGTAGCCTTCACAAGATCTT CTTGCATGTCAGTGACAGTGTATAAAATCCAAGAACCTTTAGTATAAACA TCCAACATATGTTTCAGATGCAGATCACGTTGCTGGTCATAATCAGCTGA CCAGAATTGAAACATTTTCTTGCATTTTTTAAATTCTTCTTCCAGCCCAA TGTAGTCATTTTCTGAAATTGTATCCCTGCCTTCAAACAGTTTCAATATT TCTCTTGGTTGAGGATAGGTTAAAGCAATAAAGGTGCTTTCGTCTCCATT TATGTTATCAGTGTAAATGTCAACAATCTTTCTGGTCATTGGGCTTGTCA ATGTACTCATGATAGGGACCAAAAGTTGTTCATTCTTTTCCAAAACTCTA CGTCTCAATTTCTCCTTGTACTCTTGTTGCCGATGTCTTGGTAAATGATC CATGGTTAGTGTGGTGTAGCTTCTCCTGGTTCTCCTGTATAATAATATTT TACACCTAAAACACAACATGTTCAATCTAGAATTATAATTTAACCGTTAA CTGTTTCTCCTGATTAATATTTCCCCTATTCTAACTTATTCAATTCAAAT AGTAAGCAGTTAACATCATGACCAATAAAACTTGCTTAACTCACAAAGAG TTTAAACGAATTCTCTTTGTGGTACAATCCATAAAAAGTGGGCCCGAATC TTAAACGTTATGAAAAATGAGAATGATTTTTTGATACCCCTTGTTTATAT CTATTAGCTAGCAGATAATAAACCTATGTCATGTGTGTTAGAATTTCGTG TTCTTGCTTTTTCTAGTACAAGTGCTACTCATACACTATCTAAACACTTC ATATTTTGTTTCTTGTTATTTCGCCCAAATTTGTTTTTGAAGAGGTTACA AAATGTAATATGATGTCACTCTAAATTACCCTTTAATGATGAATGATGGT AATGACAGTTCAATTTAATCCTATTTTTGTAAATATAATTAAAATGAGTT CGTCCACTTTAAAAAGCTACTGCTGTCAAAATCCAAAGTCCAAAGATCTG TCTGTCACCTGGGGGTCCTTAGGATCAAATATTGGGAGCATCAGGTCTTT GATCAAAACAAACAGATTATTCGACAGATCTAAAACAACTGTAACAAACT GTAAGCAAAAAAAAAATTTCGTGTATCATTTCATTATATGACCATGAGAA ATTTTGCATACTGAATCCTAAATTCCCAGCAATGTGGAAATTAGGGACAT ATAATAAGAGAAGTCCAAGCCCACCCTATACCATGTCATAAGATGTTTTT TTGGCTCATCTTTACAGATTGGGACCGTCTGGTCGCTCCTCTCTTCCACC ATCAATATCGGTACCAGCATCACTCCATTCATTATCATGGTCATCACCAA AGATCATCATTGGAAAACGTGTTTCTTCATCATTGGTAGTATCACCTGTG TTTTTGCCCTCATTGCAACAGTAACCATCAAGGAGTACCAAAAACCGCTA CCAGGGCTGTCAGACACCACCAAGTCTTCAGACGATAAAAATAAACAATC AGGAGTATCTTCCTCGACTAAAGTTGGAAATACAGCAGATACTAATATCT CCAAAAGCTCAGATTCTTCACAGACAATATCAACAAAAAATGAAGGCACC GGCTCCACACCAACTTCTTCACCGTTCACTCTTCTCTTCACCAGTCCGGT GTTTTGGTTGATAAGTAGTTGTTATTTGCTGTGGTCACTGGTCAAAGTAG GATCTGAAGATTGGTTGCAATTGTATCTGCTGACTGGCAAATCCTCGTCG CAAACTGAAGGTAGGGAAAGACCGCTCTTTAAGTTAGTAAGACTGCGACT GCGTCGGAGGCGTCCCGAAGACTCCACTTTCGATGGCTATCGACCCGAAG GTAGGGAGGGTGGCAGTATTTGTCCCTGGATTACTCCACTTACCCTTGAT CATTCTTTTAATTGCTAAGCATCAAGTAGAGAGGCATCGAGTACCATTTT GGAAACCTTTGGTATGACTCGGCTGAGTGTTGAATCCACAACCTTGTGCA CAGTAGGAGGATGCTCTACCACTGCATTACAGTTACTTACCGCTCTTTAC CAACGCTCATTTATATAGACTGCTGGAATCCACTAACGGATTCCTGCTCC TTATACTACATACAGTTTTGTAGAGGTCTGTGATTCAGACTTACCATTTA C

Coding sequence (CDS) from alignment at sc0000183:112726..116976-

>TCONS_00014227 ID=TCONS_00014227|Name=TCONS_00014227|organism=Clytia hemisphaerica|type=CDS|length=2154bp|location=Sequence derived from alignment at sc0000183:112726..116976- (Clytia hemisphaerica)
ATTGGGACCGTCTGGTCGCTCCTCTCTTCCACCATCAATATCGGTACCAG
CATCACTCCATTCATTATCATGGTCATCACCAAAGATCATCATTGGAAAA
CGTGTTTCTTCATCATTGGTAGTATCACCTGTGTTTTTGCCCTCATTGCA
ACAGTAACCATCAAGGAGTACCAAAAACCGCTACCAGGGCTGTCAGACAC
CACCAAGTCTTCAGACGATAAAAATAAACAATCAGGAGTATCTTCCTCGA
CTAAAGTTGGAAATACAGCAGATACTAATATCTCCAAAAGCTCAGATTCT
TCACAGACAATATCAACAAAAAATGAAGGCACCGGCTCCACACCAACTTC
TTCACCGTTCACTCTTCTCTTCACCAGTCCGGTGTTTTGGTTGATAAGTA
GTTGTTATTTGCTGTGGTCACTGGTCAAAGTAGGATCTGAAGATTGGTTG
CAATTGTATCTGCTGACTGGCAAATCCTCGTCGCAAACTGAAGGTAGGGA
AAGACCGCTCTTTAAGTTAGTAAGACTGCGACTGCGTCGGAGGCGTCCCG
AAGACTCCACTTTCGATGGCTATCGACCCGAAGGTAGGGAGGGTGGCAGT
ATTTGTCCCTGGATTACTCCACTTACCCTTGATCATTCTTTTAATTGCTA
AGAAAACAGTACAAAAACTTCGTTTAAAATGACACAAAGTGGAATATGGC
GAAGGAGTTTGTTCGTATCATGTTTCATCGGACACTGTTTGTATTATGTA
ACCAGAAAATCGTTAACATTTTCAGTTCCCATTCTAATGGAAGATTCCAC
GATGAGGATGACTAAAAGAGATTTTGGTCTGATGGCTAGCCTACAAATGA
TCACGTATTCGATCGGGAAATTCTTAACTGGATTCTTAGTGGATCAATAC
AGTAATAAGAAGATTTTTTGTTTCGGTTTGTTTTGTTGTGGATTGACTAA
TCTGGCTTTCAGTGCTGTTGGAGAGAAAAATATGTTCTTTTGGATTGTAC
TTGCCAATGGATTCTTTCAAGCTTTTGGATGGAATGCTATTGCTGTTCTG
GTCAACCAATGGTACAACAAAGCGGAGATTGGGACCGTCTGGTCGCTCCT
CTCTTCCACCATCAATATCGGTACCAGCATCACTCCATTCATTATCATGG
TCATCACCAAAGATCATCATTGGAAAACGTGTTTCTTCATCATTGGTAGT
ATCACCTGTGTTTTTGCCCTCATTGCAACAGTAACCATCAAGGAGTACCA
AAAACCGCTACCAGGGCTGTCAGACACCACCAAGTCTTCAGACGATAAAA
ATAAACAATCAGGAGTATCTTCCTCGACTAAAGTTGGAAATACAGCAGAT
ACTAATATCTCCAAAAGCTCAGATTCTTCACAGACAATATCAACAAAAAA
TGAAGGCACCGGCTCCACACCAACTTCTTCACCGTTCACTCTTCTCTTCA
CCAGTCCGGTGTTTTGGTTGATAAGTAGTTGTTATTTGCTGTGGTCACTG
GTCAAAGTAGGATCTGAAGATTGGTTGCAATTGTATCTGCTGACTGGCAA
ATCCTCGTCGCAAACTGAAGGTAGGGAAAGACCGCTCTTTAAGTTAGTAA
GACTGCGACTGCGTCGGAGGCGTCCCGAAGACTCCACTTTCGATGGCTAT
CGACCCGAAGGTAGGGAGGGTGGCAGTATTTGTCCCTGGATTACTCCACT
TACCCTTGATCATTCTTTTAATTGCTAAGAAAACAGTACAAAAACTTCGT
TTAAAATGACACAAAGTGGAATATGGCGAAGGAGTTTGTTCGTATCATGT
TTCATCGGACACTGTTTGTATTATGTAACCAGAAAATCGTTAACATTTTC
AGTTCCCATTCTAATGGAAGATTCCACGATGAGGATGACTAAAAGAGATT
TTGGTCTGATGGCTAGCCTACAAATGATCACGTATTCGATCGGGAAATTC
TTAACTGGATTCTTAGTGGATCAATACAGTAATAAGAAGATTTTTTGTTT
CGGTTTGTTTTGTTGTGGATTGACTAATCTGGCTTTCAGTGCTGTTGGAG
AGAAAAATATGTTCTTTTGGATTGTACTTGCCAATGGATTCTTTCAAGCT
TTTGGATGGAATGCTATTGCTGTTCTGGTCAACCAATGGTACAACAAAGC
GGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_007957XLOC_007957Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014227-proteinTCONS_00014227-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014227-exon-sc0000183-1575043694:116549..116976TCONS_00014227-exon-sc0000183-1575043694:116549..116976Clytia hemisphaericaexon
TCONS_00014227-exon-sc0000183-1575043694:112726..113609TCONS_00014227-exon-sc0000183-1575043694:112726..113609Clytia hemisphaericaexon
TCONS_00014227-exon-sc0000183-1510915933:116549..116976TCONS_00014227-exon-sc0000183-1510915933:116549..116976Clytia hemisphaericaexon
TCONS_00014227-exon-sc0000183-1510915933:112726..113609TCONS_00014227-exon-sc0000183-1510915933:112726..113609Clytia hemisphaericaexon
TCONS_00014227-exon-sc0000183-1491911889:116549..116976TCONS_00014227-exon-sc0000183-1491911889:116549..116976Clytia hemisphaericaexon
TCONS_00014227-exon-sc0000183-1491911889:112726..113609TCONS_00014227-exon-sc0000183-1491911889:112726..113609Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000183supercontigsc0000183:112726..116976 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.15215 3.01111 9.46884 10.7959 4.38098 3.08487 4.05258 4.91669 5.99012 6.5804 9.84134 4.13436 3.25155 3.77665 4.56605 5.68409 5.91576 6.13771 2.1199 3.79261 4.01174 4.00458 11.2114 11.2322 5.31822 6.10249 4.85147 3.34192 9.4606 9.09326
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000849Sugar_P_transporter
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0055085transmembrane transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
biological_process GO:0006810 transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005215 transporter activity
Blast
BLAST of TCONS_00014227 vs. Swiss-Prot (Human)
Match: G6PT1 (Glucose-6-phosphate exchanger SLC37A4 OS=Homo sapiens GN=SLC37A4 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.093e-27
Identity = 76/294 (25.85%), Postives = 134/294 (45.58%), Query Frame = 3
Query:   42 GIWRRSLFVSCFIGHCLYYVTRKSLTFSVPILMEDSTMRMTKRDFGLMASLQMITYSIGKFLTGFLVDQYSNKKIFCFGLFCCGLTNLAFSAVGEKNMFFWIVLANGFFQAFGWNAIAVLVNQWYNKAEIGTVWSLLSSTINIGTSITPFIIMVITKDHHWKTCFFIIGSITCVFALIATVTIKEYQKPLPGLSDTTKSSDDKNKQSGVSSSTKVGNTAXXXXXXXXXXXXXXXXXXEXXXXXXXXXXXXXXXXXPVFWLISSCYLLWSLVKVGSEDWLQLYLLTGKSSSQTEG 923
            G +R  +F + F G+ LYY  RK+ +F +P L+E+  + + K D G + S Q   Y+I KF++G L DQ S + +F  GL   GL N+ F+      +F  +   NG  Q  GW     ++ +W+  ++ GT W++LS+++N+   + P +  ++ + + W++   + G++  V + +  + I  + +P    +D    + D     G   S K  +T                                 L  SP  W++S+ YL+   VK    DW Q +L+  K  S   G
Sbjct:    7 GYYRTVIFSAMFGGYSLYYFNRKTFSFVMPSLVEE--IPLDKDDLGFITSSQSAAYAISKFVSGVLSDQMSARWLFSSGLLLVGLVNIFFAWSSTVPVFAALWFLNGLAQGLGWPPCGKVLRKWFEPSQFGTWWAILSTSMNLAGGLGPILATILAQSYSWRSTLALSGALCVVVSFLCLLLI--HNEP----ADVGLRNLDPMPSEGKKGSLKEEST------------------------------LQELLLSPYLWVLSTGYLVVFGVKTCCTDWGQFFLIQEKGQSALVG 262          
The following BLAST results are available for this feature:
BLAST of TCONS_00014227 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
G6PT14.093e-2725.85Glucose-6-phosphate exchanger SLC37A4 OS=Homo sapi... [more]
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