TCONS_00014799 (transcript) - C. hemisphaerica

Overview
NameTCONS_00014799
Unique NameTCONS_00014799
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length534

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00014799 ID=TCONS_00014799|Name=TCONS_00014799|organism=Clytia hemisphaerica|type=transcript|length=534bp
TGTTGATCGAGTACACAGGGGAAGGAGCGCAGTGTCAAGCGGCTAAGTTG
TTAGAAGTCATTGTTTTGCAATACCGTGGTCATTTGGATAGCACGATACC
AGCTTTCATCTCGTTGTGTTTGGAACGTTTATCTATGGATTTGAAGACCA
GTGAATTGAGAGTCATGCTTCTTCAAGTTaTCATTTCTTGCGTGATCAGC
AATCCCATCCTTACGCTATCTCACTTGGAGAAGTGTGTTACTGAACGTTA
TCCAATGGGTTTCACAAACGAATTCCTTCAGCTCTGGCTCAACGATACTG
ACTGTTTCTTAGGAATGCACGATCGCAAAGTCTATGTCTTCGGTATCTGT
TCTCTGTTAACGTTACCACCAGAAAACCGCCCTCAAGCTGTTGAATTATT
CGCCCCTCAATTCGTTCCCGCCCTTCTAGTTGTATTCAAGGGGCTCATCA
CCATGTATGAAAaatacgAGAAAGATATCGAAGAAGAAACGGAAGAAAAA
CCAGCTGAAGAAGAAGAATTGAACGATTCGGACN
Run BLAST on NCBI

transcript from alignment at sc0000198:59154..64961-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00014799 ID=TCONS_00014799|Name=TCONS_00014799|organism=Clytia hemisphaerica|type=transcript|length=5808bp|location=Sequence derived from alignment at sc0000198:59154..64961- (Clytia hemisphaerica)
TGTTGATCGAGTACACAGGGGAAGGAGCGCAGTGTCAAGCGGCTAAGTTG
TTAGAAGTCATTGTTTTGCAATACCGTGGTCATTTGGATAGCGTAAGTAT
CTCGTATTGTATATTGTTGATTTTTCATAACTTAGTGTCAAGCCTGTGGC
ACCGTTAAACGGAGTCTTTAATGGGTTTTTCTTAGTTTAAACTTACGATT
GTCAACTGAAACTCACTGTAATCCTTAAATGAAGCTTACATAAAGCTTTC
CGAATGTTAAAAATAAAGTATACGTCATACCACCTGATATCCAACCAATC
CCTCTCAACCATTACACGTCATAACTTACGTGCGTAACAAAACACATCTC
AACTCAAGAAAGAATTGGTACCCTCGACTTTAGGCTCTCCTAGTCCCAGA
TTTATCGGTACTACAATACATGAAAATCGGGCGATCTCATATCATATGAT
ACCACTGGTATGTATGATAGTTTAACGTGTATTTCATTTTCTTTAAATTT
CAGACGATACCAGCTTTCATCTCGTTGTGTTTGGAACGTTTATCTATGGA
TTTGAAGACCAGTGAATTGAGAGTCATGCTTCTTCAAGTTGTAAGTTTCA
TTCTTCCGCCAGAGAAAACTATTGAGTAAAAAATAGTCCAATATAGATTG
ATTCGAGCCCGAATCTTTTTGTTTAAAGCCATGTTCGCACGTGATGGTTC
CGTTTCGCTCCGAAACGGAATGAAGTCATTCTATTGGTTACATTCAAGTG
TTACGTCACTTCCAACCAATAGAATGGCTTCATTCCGTTTCGGAGCGAAA
CGGAACCGTCGCGTGTGAGAACATGGTCTAAGAAGAGTTCCCCTTCGAGT
TTGAACTAGACATAACCAACTGTATACAGCCAAACGTATAATGTAACAAT
AGCGTTCAGTTTGAGGTCATTGTTGTTATTTTCTGCAAGGGCAGAATTAA
TGACAACAACGAACGAAAACTTAACGCTATTACTATTATTATCCATATCG
GACATTCAAACAACGTTTTTTTCTAGCGTCAACCAATTCTTTTTGTTTCA
ATGCAATGTCTTCAACAAATTTTTAGCACCTTGCGAGCGGGCTACAAATG
ACCAAAAAGTGTTTTTTCTGACGTTAGTTTAGTCTCTTTGCTTCAATGCA
ACGACTTCAATCCAATTCCGAGCGGACCGCAAATGACATTATTGCCCTAT
ACCCGGGCAGTTAATGATAGTTTAGCCCTCTGAAGCCTGGCGCTTTAGTT
TCCTTAGCGAGGGTATGACAATTTGAGTCACAAAACCTTTCAATACCGCC
CGCCGATTGAACCTTTAATGGCTTACTTTATGACCGCTATATGGATAATA
ATAATACTTTATTTAGAAAAGGTCGCATAATATTTTCAAAGAAAAATGCA
TTAAGGTCCTTTCTCATCCTTTGATATCTCGTCTTGAATTCTGATTGATT
TTATTTTGTATTTTAGATCATTTCTTGCGTGATCAGCAATCCCATCCTTA
CGCTATCTCACTTGGAGAAGTGTGTTACTGAACGTTATCCAATGGGTTTC
ACAAACGAATTCCTTCAGCTCTGGCTCAACGATACTGACTGTTTCTTAGG
GTATGCTTTGGCATAATCTGTCTTCCTAACAATTCTGTCCTTTTTCAGAC
AGGAATCAAATCACAGATATCGTATGAAGACAAATATTTTAAGATATCTA
TGATTCAAACGTATGATAACCATACAGGGTTTTTTTTTCGAGTAAAAACC
GTTCAGGGAGGGTGGAGGACATTTTCTTTAGCCGTACCAAGAGGTAGCGA
GAAATTCGATGATCTTAAAATAAGTCGGTGTTTCGATAGCCTTTACGACA
TCATTATCAAGTCTTGAAATTCTGCAAACTAGCTTATGTAGAAAACTTGG
TACATTGCTAAAAAAACTATAAGATACATTTGGGAATGAAAACTTGTTAT
AAAACGATTAAAAACAATAGATTATACAAAAGAAATAAAATCACGTCGTT
GACAGTCAAAATAATTGGAACTCTTTGGAGGCTTTTGATTCCATTGTTAA
AATATGCTTCTTTAAATTCTATTGTGTAACAGTATCCGCAGTGCCGATCA
CTTTTAAGTTGTCACGAACTAAATTCAACCTGAAATCGCTAGGGACAACA
TCATTCATAAACATATTGTTAAATGAAAATAGATGTTCACAATTCAAACA
ACTATCGAGATGGGATCGGATCGCAGATTTTACAATATTTACAATATGTA
GGAGTAAATGTTGTGTCCACAAGTACATGGGCCAACTTTTTTCCTGAAAA
ACCCGAACTCCGTATTTTATAAATTAATAAAGCGTTTACTTACTTATAGT
ACCAAATTGTTGATTTCCTCTACTTTATTGATCCTATTTTTTCCTAATTT
CACTTTTTTAATATTGTTATCTTTCAGAATGCACGATCGCAAAGTCTATG
TCTTCGGTATCTGTTCTCTGTTAACGTTACCACCAGAAAACCGCCCTCAA
GCTGTTGAATTATTCGCCCCTCAATTCGTTCCCGCCCTTCTAGTTGTATT
CAAGGGGCTCATCACCATGTATGAAAGTAAGTACAAGTCGCCTGGTATCT
TCCCTGGATTGTTTCAAATAAAAAAGCAGAGCGAGAATATTAGAGTATGT
TTCTATTTGTCCTCTATGCACCAAACTGTCAGGCTGCGAGACTTCGAAAG
CAAGAACGGATTTCGATTGAATTATTGAGACGATTGGAATTTTATGACTT
TGGAACAAGTGTTTCACGCAAACTCTAAAACTCCAAATAGCTTGAAAACT
TATCCAAGTATCCCATACATTTAATGTGGTTTTTCAAGTTACTTACAATC
TTAAAATCTATCTGCTCAAATAACTAAGTAACAATCAATAATTTTTTTTC
AGAATACGAGAAAGATATCGAAGAAGAAACGGAAGAAAAACCAGCTGAAG
AAGAAGGTACGCCTTTTTTACTGATCAGCAATCTTCGATGATCTTTGGTT
CAAAGATAATAATTTTCGCTGACTATAGGATATCAAATTTGAAACTTGAA
TGGAAATATTAGCCGTCCAAAGAATTACATTGAATAATTTGTTCATTTTA
TAAGAACTCGAGACTGAAAATTGGCCAAAACCTAAGAGCAATATTTAGCA
TCAGATTTTAGGAATTTAAGTTTTTAAGTTTTTAAGTGAAGAAACTAAGC
GTATAAGGAACATTTAAGCCTGAACATATCAAAAAATTAAGAACAACCTA
GCTTGAACCAATATTTACTGGCTCGTATAAAAAAGCGAGTAAACCAAATA
TATTAGCGGTTTTAATGGTATAACTAAGACACTGGACATATATAAGTGGC
CGCAATATGCAACGACGATCCGGTGCTCAATGCTATTGCAAAATACTCAG
ATCATCCCGCTAGCATTATAAAAATCAAAAATATTTTTGCTGGTAACTCT
GTTCTTTTGCACTCAAAGATTGCTTCAACTCTTGTCTCGACAAGACTATT
TTCCCGGAATCCTTAAAAAGAGCTACAATTACCCCGGTTCTTAAAGAAGG
CGATCCGACGAGTGTTAAAAACTACAGACCTATTAGCATATTTCTACAGT
ATCCAAAGTATTTGAATAAATCATTGCCCAATAATTAAATCCTTTTTTAG
AAAACTGCTTTTCAGATTTACTGTGTGGCTTTCGAAAAGGACACAGTACG
CAGCATGTTCTAGGCAAAGGGCACTTGATGATTCAAATATTGTGGGTACA
ATACTTATGGATTTATCGAAAGCTTACGATTGTTTACCCCCTGATTTACT
GATTGCAAAATTAGCAGCATATGGTGTTAACCACAATAGTCTTAACCAAA
ATAGTCTACAGTTTATTTATGATTATTTGATAAACCGTTACCATAGAGTC
AAAATTGGAAATAGTTTGAGTAGCTTTTTATCTATTAGTATGGGCGTTCC
TCAGGGATCCATTTTAGGCCCATTTCTTTTTAACATATTTTTGAATGATC
TCTTACTATCTGACCCAGGGGGGGGGGTCCATGTACAAAACAGCGGCATG
TATCAGTACTTTGTAGCAAATTTCGATTTTAAACACCCACCCACCCCTAT
AGTACAAAATGTACAAAATACTATCCAGCAAACTCCCAAAAACACCCCAA
CACCCCCTATATTTTACAATATACTATCCAGTACTATCCAGCAAACTCCC
AAAAACACCCCAACACCCCCTATATTTTACAATATACTATCCAGTACTAT
CCAGCAAACTGCCAAATACATCCTGACACCCCCTGTATAATACAATATAC
TATCAAGCAAACTGCCAAATATACCCCAACACCCCCCTTACATAGTACAA
TATACTATCCAGAAAACTACCAAATATACCCTACACCCCTTCATAAAATA
AAAATTTTAAGCCAAAAAACTTGAAACTTTGGGGCAAGTTTTTTATTCTT
CCCATAAAAAAATTTCAAAAAATTTTCTCGAAAATTGACAAAAACAATTG
AGAATTTAAAAAAATTTTCGACAAAAATCTAAAATAAATCACAATTTGAT
TTGATTTTGGCTTTTTAGTACACAAATACTAAGCAGAAAATCCGAAATTT
GACCCTGACACCCCTTGTATAGTACACGTACACTAAACAGCAAATTAGAA
ATTTGACCCTGACACCCCCACAAGTACTAAACAGCTAAATTTTTTTGAAA
ACACCCACCCACCCCATGAGACATGCCGCTTTTTTGTACATAGACCCCCC
CTGTCTGACCGTGAAGCAGAACTCTGTAACTTTGCTGATGACAACACTCT
TTCGCAATCGCTAAAGCCCTTGCTGAAGTTATTTCAAAACTCAATATCGA
AATTCAAGATATTTTGTACTGGTTTAAAATCAATGGGCTTGTTGCGAATC
CAGGAAAGTTCCAAGTTATGTTTCTTGGTAGCTTTGAGCCTATATCTACT
TTTAATATAGGAAATATCAAAGTTAAGGTTAAAAATCAGGTCAAACTTTT
AGGTATCTATATTGATAATAAGCTACGCTTTAACTCTCACGTTGAATCAA
AATGCCAGTCGGCGGGAAATAAAATCAGCGCTCTTTGGCGCATCCGCCCC
TTCATTTCTCTTAAAACAGCGAAGGCCTTGTGTCACGCCTATATTTTTTC
TAATTTCAATTATTGTCCATTAATTTGGATGAATTTTGTAAAACACAACA
ACAAACAAATTGGAAAAATTCAACGAAGAGCTCTTAGCGTAGTTTATGAA
AACTATGGCTCTAATTTATATAAATTATTAACTTTAACTAGAACTGCTTC
TTTTCACATCAAATTTGTTCATAACATTCTTGAGGAAATTTATTTAACTC
TTAAAAAACTAAACCCGCCTTTCTTAGCTGAGCTCTTTGTCACGAAAACC
TCGGGCTATAAACTTAGACGAGGAGACCAACTTATGTTACCTTCAGCTAA
CACAGTTAAGTTTGGCTTACAATCTTTAAGTTTTGTTGGCTCCCTCATTT
GGGATCGCCTCTCTAAGGATGTGAAAAGCTCTGCAACGTTTAATACATTT
AGGGGCAAACTAAAAATGTTGCCAAACGATTTTTGCACCTGCCCAATATG
TAAATTGTGGTAGATATTTAAGACTATTTTTATAAAAGTTGGATTTTACT
AGTAACGGTTTAAGGCTGTAACTATTTAGGACGTTAGGTCCTTTACTTTG
TGTACCAACTGAAAATAAATTAATAATAATAATAATTAAATGTAACAAAA
ATAGCACAAAATCATTACCTTGTATTTCTCTCATTTTTAGAATTGAACGA
TTCGGACN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008278XLOC_008278Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00014799-exon-sc0000198-1575043694:64870..64961TCONS_00014799-exon-sc0000198-1575043694:64870..64961Clytia hemisphaericaexon
TCONS_00014799-exon-sc0000198-1575043694:64372..64458TCONS_00014799-exon-sc0000198-1575043694:64372..64458Clytia hemisphaericaexon
TCONS_00014799-exon-sc0000198-1575043694:63362..63495TCONS_00014799-exon-sc0000198-1575043694:63362..63495Clytia hemisphaericaexon
TCONS_00014799-exon-sc0000198-1575043694:62386..62534TCONS_00014799-exon-sc0000198-1575043694:62386..62534Clytia hemisphaericaexon
TCONS_00014799-exon-sc0000198-1575043694:62006..62059TCONS_00014799-exon-sc0000198-1575043694:62006..62059Clytia hemisphaericaexon
TCONS_00014799-exon-sc0000198-1575043694:59154..59171TCONS_00014799-exon-sc0000198-1575043694:59154..59171Clytia hemisphaericaexon
TCONS_00014799-exon-sc0000198-1510915933:64870..64961TCONS_00014799-exon-sc0000198-1510915933:64870..64961Clytia hemisphaericaexon
TCONS_00014799-exon-sc0000198-1510915933:64372..64458TCONS_00014799-exon-sc0000198-1510915933:64372..64458Clytia hemisphaericaexon
TCONS_00014799-exon-sc0000198-1510915933:63362..63495TCONS_00014799-exon-sc0000198-1510915933:63362..63495Clytia hemisphaericaexon
TCONS_00014799-exon-sc0000198-1510915933:62386..62534TCONS_00014799-exon-sc0000198-1510915933:62386..62534Clytia hemisphaericaexon
TCONS_00014799-exon-sc0000198-1510915933:62006..62059TCONS_00014799-exon-sc0000198-1510915933:62006..62059Clytia hemisphaericaexon
TCONS_00014799-exon-sc0000198-1510915933:59154..59171TCONS_00014799-exon-sc0000198-1510915933:59154..59171Clytia hemisphaericaexon
TCONS_00014799-exon-sc0000198-1491911889:64870..64961TCONS_00014799-exon-sc0000198-1491911889:64870..64961Clytia hemisphaericaexon
TCONS_00014799-exon-sc0000198-1491911889:64372..64458TCONS_00014799-exon-sc0000198-1491911889:64372..64458Clytia hemisphaericaexon
TCONS_00014799-exon-sc0000198-1491911889:63362..63495TCONS_00014799-exon-sc0000198-1491911889:63362..63495Clytia hemisphaericaexon
TCONS_00014799-exon-sc0000198-1491911889:62386..62534TCONS_00014799-exon-sc0000198-1491911889:62386..62534Clytia hemisphaericaexon
TCONS_00014799-exon-sc0000198-1491911889:62006..62059TCONS_00014799-exon-sc0000198-1491911889:62006..62059Clytia hemisphaericaexon
TCONS_00014799-exon-sc0000198-1491911889:59154..59171TCONS_00014799-exon-sc0000198-1491911889:59154..59171Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000198supercontigsc0000198:59154..64961 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	2.20075	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3.58031e-07
Blast
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BLAST of TCONS_00014799 vs. Swiss-Prot (Human)
Match: IPO8 (Importin-8 OS=Homo sapiens GN=IPO8 PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 4.677e-36
Identity = 73/145 (50.34%), Postives = 94/145 (64.83%), Query Frame = 3 
Query:   15 TGEGAQCQAAKLLEVIVLQYRGH-LDSTIPAFISLCLERLSMDLKTSELRVMLLQVIISCVISNPILTLSHLEKCVTERYPMGFTNEFLQLWLNDTDCFLGMHDRKVYVFGICSLLTLPPENRPQAVELFAPQFVPALLVVFKGL 446
             GE A+C AAKLLEVI+LQ +G  +D  IP F+ L LERL+  +KTSELR M LQV I+ +  NP L L  LE+      P   T +F+  W+NDTDCFLG HDRK+ + G+  LL L  +NRP AV+    Q VP++L +F GL
Sbjct:  730 AGEDAECHAAKLLEVIILQCKGRGIDQCIPLFVQLVLERLTRGVKTSELRTMCLQVAIAALYYNPDLLLHTLERIQLPHNPGPITVQFINQWMNDTDCFLGHHDRKMCIIGLSILLEL--QNRPPAVDAVVGQIVPSILFLFLGL 872
The following BLAST results are available for this feature:
BLAST of TCONS_00014799 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IPO84.677e-3650.34Importin-8 OS=Homo sapiens GN=IPO8 PE=1 SV=2[more]
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