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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00015424 ID=TCONS_00015424|Name=TCONS_00015424|organism=Clytia hemisphaerica|type=transcript|length=3241bpRun BLAST on NCBI protein sequence of TCONS_00015424-protein >TCONS_00015424-protein ID=TCONS_00015424-protein|Name=TCONS_00015424-protein|organism=Clytia hemisphaerica|type=polypeptide|length=597bp MVGLMANCFAWLKSKNKPPKDVKLVIIGLDDAGKTTTVACLQGEPPDGITRun BLAST on NCBI transcript from alignment at sc0000211:234130..244917+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00015424 ID=TCONS_00015424|Name=TCONS_00015424|organism=Clytia hemisphaerica|type=transcript|length=10788bp|location=Sequence derived from alignment at sc0000211:234130..244917+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000211:234130..244917+ >TCONS_00015424 ID=TCONS_00015424|Name=TCONS_00015424|organism=Clytia hemisphaerica|type=CDS|length=23322bp|location=Sequence derived from alignment at sc0000211:234130..244917+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00015424 vs. Swiss-Prot (Human)
Match: AR13B (ADP-ribosylation factor-like protein 13B OS=Homo sapiens GN=ARL13B PE=1 SV=1) HSP 1 Score: 212.231 bits (539), Expect = 1.472e-59 Identity = 95/205 (46.34%), Postives = 145/205 (70.73%), Query Frame = 1
Query: 16 MVGLMANCFAWLKSKNKPPKDVKLVIIGLDDAGKTTTVACLQGEPPDGITPTVGFSNANLKFGKCNVTLYDLGGGVNVRTVWKKYFAEIYGIIFTIDSCNKDRIEESRDALSEIFQDPKVSGKPILIFANKQDKEGALDVPXXXXXXXXXXXXXXYEFKYNVFPCSAIKGFGNKTDKSIRDGFNWLLSAVNNDYQTIHEKVEHES 630
M LMA+C W K +P + V L+++GLD+AGKT T +QGE P+ + PTVGFS NL+ GK VT++DLGGG+ +R +WK Y+AE YG+IF +DS +++R+EE+++A+SE+ + P++SGKPIL+ ANKQDKEGAL + + L ++ L +++ + PCSAI G+G K DKSI+ G WLL + D+ ++E+++ E+
Sbjct: 1 MFSLMASCCGWFKRWREPVRKVTLLMVGLDNAGKTATAKGIQGEYPEDVAPTVGFSKINLRQGKFEVTIFDLGGGIRIRGIWKNYYAESYGVIFVVDSSDEERMEETKEAMSEMLRHPRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEHKCLCQIEPCSAISGYGKKIDKSIKKGLYWLLHVIARDFDALNERIQKET 205 The following BLAST results are available for this feature:
BLAST of TCONS_00015424 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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