TCONS_00015650 (transcript) - C. hemisphaerica

Overview
NameTCONS_00015650
Unique NameTCONS_00015650
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1848

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00015650 ID=TCONS_00015650|Name=TCONS_00015650|organism=Clytia hemisphaerica|type=transcript|length=1848bp
AATAACGGAAACTAATACAAACACAATCTTTTTCCTGCTGTAtgtttttt
agaaagaaaagaaaaaggaattAATGGACAAAAGTTGATGACtggagaaa
aacaacaaaagaaaagatACAACAAGAAAGGGGGAAACCACCATGTGAAT
ACAAATGAAGTTATTGAGGAAGGAACCGGCTGACGCACGACAAAGAACGA
AAACTACATATAAATAAGCGAATAGAACAACACAAGTGGGAATTGCTTTT
AGATACATTTTATATTGACTTGTTGATTGACTGTCTATGAGACCGAATGT
CAACAAATTAAAAGCTTTTTGGGTACCTACAATGATTTTGTGGTTTAATG
CAttggttttcatttttctcaaacTCAAGAGATGTTATACACTTGGTTGT
TTGTGATTTTAAAGAAATAACATTTGTATGAACATTATTATCTTACCAAG
CTGTCGGTTGGTTTAAAAGTAGAAGAGAAAAACACACTATTAAAATCAGC
TGATTATCAAAGAAAGAGCTGGGTTGAAGAATATATTGGATTTTGCAGAC
AGTAAAACTTGTGGTACAAACATGTGGTTTTGGTTTGGTTTATTATTGAC
ATTCTACTGCAAGACTCATGGTCTCTCGATCACTGAAGACATAGCAGAAC
AGattgaagttgaaaatgaagACAGCTCATTGATCCATTTCGAAAGTGGT
CAACAGAATAATGACCAAGGAAAATCATCAAAGAACTTAGATAACCTTTT
ACAGAAACCAACGCAAATTTGGAATGTTCCTAACGAGCTATCTATACACC
CATCATCATGCGAGCAATATACATACTGTGAGAGAGAAGACCGACCAGCA
GAGGGAGTTTACAGACGTTTACCCATCTACCCTTGGTGGTATTATTCATG
TGAGGGTAACAAAGTCAAATGTCAACCATGCCCCTCCACTGAAGATCTCG
ATCATCCAACTTTATTCTTCTCAGAAAGATGCCAGAAATgtatttcagaa
tttaaagACGAGAAGATCGCATGCCCACCAAAAACTAAAGAAGATGAGAA
AACAAGCAACTGGacgaaattgaaattgatgttTTGGTAAATTAGTGGAA
TAATGATATTAACATCACGAAAAAAACGAAAAcagattttacattttaca
attttattaccAAGAATCTTTTNATGAGAAAACAAGCAACTGGacgaaat
tgaaattgatgttTTGGTAAATTAGTGGAATAATGATATTAACATCACGA
AAAAAACGAAAAcagattttacattttacaattttattaccaacaatctt
ttatatttttatttattcttcaaaagattttattaatttattctaatttt
tttaatagcgaacaaggaaaaaatcattttagggTACCTGGTATTTTCTG
GTATTTCCaagagagaaatttcaaatacaCACAAAACCAACGTTGAATTC
TCAAATTGTTTGGACTTAATTCTACTAAGTtattgttttagaaaatttaa
ttctgtttaaaagaaaatatttttgttttatcaatttttatatATACAGA
TATTgtaaataataacaaaaacagtttttatcttcattcaaaatatatta
ttttcaagCTTAATCCAAGAAGAAAAATAGACCCCCCCCTAAGAAGGATA
GCCGATGGTCAAAGGCCAAAATACTTTTGAAGGATTTCATAAGTTTAGGA
GAGAGAAGGAGCATAATGTCTTGGTGACCAGGTGATATTGTAAAATCCAA
ATCTAAATTTCTACAGAGAGCTCAAGGAGGATTTTCAATGAATTCAAACG
AACAAATCTTTGAGATTAGTCAAAAACAATATCTCATGTCACAAAAAT
Run BLAST on NCBI

transcript from alignment at sc0000215:85839..91137+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00015650 ID=TCONS_00015650|Name=TCONS_00015650|organism=Clytia hemisphaerica|type=transcript|length=5299bp|location=Sequence derived from alignment at sc0000215:85839..91137+ (Clytia hemisphaerica)
AATAACGGAAACTAATACAAACACAATCTTTTTCCTGCTGTAtgtttttt
agaaagaaaagaaaaaggaattAATGGACAAAAGTTGATGACtggagaaa
aacaacaaaagaaaagatACAACAAGAAAGGGGGAAACCACCATGTGAAT
ACAAATGAAGTTATTGAGGAAGGAACCGGCTGACGCACGACAAAGAACGA
AAACTACATATAAATAAGCGAATAGAACAACACAAGTGGGAATTGCTTTT
AGATACATTTTATATTGACTTGTTGATTGACTGTCTATGAGACCGAATGT
CAACAAATTAAAAGCTTTTTGGGTACCTACAATGATTTTGTGGTTTAATG
CAttggttttcatttttctcaaacTCAAGAGATGTTATACACTTGGTTGT
TTGTGATTTTAAAGAAATAACATTTGTATGAACATTATTATCTTACCAAG
CTGTCGGTTGGTTTAAAAGTAGAAGAGGTCAATAACATTTTTGTTTCTGc
tcaaaaattatttgaaaaaacaGAATCTGTGTTTGCGATTGAAGAATATC
ATCTCTCTAAATCTCTTGTGTTGATTGTATCTAGAAAAACACACTATTAA
AATCAGCTGATTATCAAAGAAAGAGCTGGGTTGAAGAATATATTGGATTT
TGCAGACAGTAAAACTTGTGGTACAAACATGTGGTTTTGGTTTGGTTTAT
TATTGACATTCTACTGCAAGACTCATGGTAAGAAACTTGCAAAAATATAA
CAGAACGATATATATATTCTGGCAAATTGGATATTTAGCTCAGCAGACAA
GTATATTTATTTATCAAGAGTTATAACTGATCCAAATATAAATTTCCTTA
GTTGAGATATGGCATATACGTTGATGATATTATATCGGCTTCCCTAGATC
TATTTATGAAATCTGGCTTTTAGATTTTCAAGGAAATGGTGATATAATTT
TCATAGAAAACCAGCAAGACAGAGGATTCTGAGAATAAAGTTTAGGAAAA
AGAAATCAATCGATTTTCGTCGTCTTTGTTAGTGAGATAGAGAGGGGTAT
CAGGTGTCTTTTTAAGAGAACTTTCTTTTACTTCAATGTTCGAAAGGCCA
AGTACAGTAGATCGGTACATTGCAAAAAGAATTAGAAATGACTCTATAAG
AATGTACAAAATAAATCTGtgattattttcggaaaacaacTTATTGTGAT
TTTAGAAGAGAATAGAATAAGACTATTCTTCTGAGTCTATGAAAGAAGAA
GCTAATACCACGAGGGAATAACAACAAATAGTCGAGAAAATCTTTTcgac
tttatttttttttgtacaatgaGTGTGATGGACAAAGAAAAGAGGAACCT
TAGGATAAAGACTGCCCAATTATTACAGATTACAGCTAAAGAACTCTCTT
AATTGATATCAAGAAAACAACTTCTTGGAGATTGACGTTCCATGAACTTA
CTTACAACTTGAAGTTTATAAAACTACATGTGTTGCGATACGTTTTTGAT
TTCGAGAGCCAAAATCGTCATCCGTTCATTACGTCAGCGAAAATAAAACA
CTTGAAGAAGCAAGATTTTCGACCATTTAACAACTTAATTGAATTGAGTT
GAAAGAGTTGTTTTGATATTAAGTTATGGAGTCTCTTGTAGTTatgatgt
ttttgatttttcttcctttGATAAATGGTAAGCTGTGGAGAGTTTTTCAT
TTCTGTTGGGGGTAATTGCAAAGAAAAACAACATCGTAGCTTCTTCTATG
ATCGCTGTCTTTGAGAATCATTGTCTTTGAGAAGATTTtaaccttctttt
tttaatcatgGTCATTTTCTTAAACCTCAAACTCATCATGGGTCTCGAAC
AATCCAATTAGCATTGAGATTAGTAAGGTAAAGAAAGAAGGGCTTCAACT
AATGAATAGTCTGATTAATAGCCTTAAAAGTTTTGCAGCAGTGTCGTCCT
TAAGCAGTATTTTTAAAAAAGCTATTagtcaggaagaaaagacacttttt
ctTTCTGACTGACATCGCTCTACTTATGTATCGAGCACTGTATacgcccc
ccagcggtttgcgtgaatgcgtgaatgcgtgaatgggcattttcggttgc
gtgaatgcgtgaattgaaaaaacttgcgtgaatgtgaaaatccacttttt
aactgcgtgaatgcgtgaatctgggctattttttgcgtgaatacgtgaat
tttcccttttttccactgATTGTGTGCAgtgttcccgattttccaatgtt
tctccgatttttcccgaaaattttccgattttctgaaaaattgggttatt
gcgtgaaactcgaggaaaatttgcgtgattgcgtggtttgagggtccgct
ggggggggggtggtGATGCTCGTATACTGAAGAAATACTTAAAGAAGCTA
TTAGAAGTTCTGACCGAATCTATGACCCACTACGAGCTAAACATCATCTA
AAGAATGATATTAAAATCATACGCCATAACAAAAAACAATCGTTCAAATC
TTCCTTTGCAGGTCTCTCGATCACTGAAGACATAGCAGAACAGattgaag
ttgaaaatgaagACAGCTCATTGATCCATTTCGAAAGTGGTCAACAGAAT
AATGACCAAGGAAAATCATCAAAGAACTTAGATAACCTTTTACAGAAACC
AACGCAAATTTGGAATGTTCCTAACGAGCTATCTATACACCCATCATCAT
GTAAGGACATTCCTTTGTCAATCAAATACTGTTTGACGCTTGTTTCACAC
CTTTTATTTATTAAAACTAAAAGCCATAAATGATTAACTCAGTGAAAGAT
ACGAACATGATTCAATCGTTGTGAGAGGAGCTTAAAGTATTCTTGATTTT
CACCATCGTATCAAATCTTCTTTGACTTATTCAATCGTAAACACTTCATA
TTAAGTCTGATAACCATAAATGGTTAATTTAGTTTACAACTGATTTGAGG
GGGATTCGATGACAGCTTCATTGTGAgacgaatacacgtttttttttata
taagaacatcaaaaattttcgaagccttcggatgttcttagttttttgga
tttgaagcctaaaaatgttcttaaaatgttcttattttcagcattttttg
agaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNcaaagccttagtatgttcttagaatgttcttaaatttttgggcctcg
aagccttatgttcttatatagtttgttcttataaaaaaaaaacgtgtaag
tcgGGAATTTATAATATCGACAATTTTGACCAACTTTATCAAAACTTTCA
TTTCCAGGCGAGCAATATACATACTGTGAGAGAGAAGACCGACCAGCAGA
GGGAGTTTACAGACGTTTACCCATCTACCCTTGGTGGTATTATTCATGTG
AGGGTAACAAAGTCAAATGTCAACCATGCCCCTCCACTGAAGATCTCGAT
CATCCAACTTTATTCTTCTCAGAAAGATGCCAGAAATgtatttcagaatt
taaaggtaaGTGAGACGGAGAAAGGAATGAGCTTATGTCTTGGGATGCTA
AAATCCTCATTAGGCTTGTCTAGAACAAGCTTGGGGTAGACTAAAACACA
TTTTTCATCATGCTAAGTTTACTGGCAATACAAGAAAACATTGCATTCGT
CTTTTGCACTACTGTTTTTTACACACTTTTGGTTTTTGCTTATAACGAGA
CATATCTGACGGTGAGGGAGACATTTTGTTTCCTTCGATACAGTACATAC
ATCTAAAGTACGCAAAAGGTTTTTCACGTATAGATGCCAACGACGAAAAC
ACCGTCTCTCTCGGGTGCTCTTTGAAGACACCCGTCACAAAAAGACAAGT
GAGCGACTGCTTAATTAAATCTAATCAATATTCATTTTCGTATTCTTTCT
ACATTTAGACGAGAAGATCGCATGCCCACCAAAAACTAAAGAAGGTAATT
AAATTTCTCTCTATTTTTGTAGTTTTCGATCGCTTGCCCATTCATGTTAT
TAATATACCGTTGATTGAAATGGGCTAATTTCGTTTGATTCGAAGAGCGC
ATCTCGCTTTTAAAAAGAAGTCGTTAGGAGGAACTTATGCGTTAAGTTCA
TTACCGGAGTAATTAGTCATTAAGAATCTAATTATCCAGGAAAGAATGGA
GGATATTATAAATTATAAGAGAATGTCTATCGAGAATTAAAGACTCGGTT
AAATATCTGCTTTAGGGACGTCCCGTCCATCCGGTTATATAGCCTATAAG
AACACATTATCACTTTGAAAGCACCTATAAATTCACATAACGAGTTTAAA
AATTACATAAaccaaaattgttaatttttttttttgcaccatAGATGAGA
AAACAAGCAACTGGacgaaattgaaattgatgttTTGGTAAATTAGTGGA
ATAATGATATTAACATCACGAAAAAAACGAAAAcagattttacattttac
aattttattaccAAGAATCTTTTNATGAGAAAACAAGCAACTGGacgaaa
ttgaaattgatgttTTGGTAAATTAGTGGAATAATGATATTAACATCACG
AAAAAAACGAAAAcagattttacattttacaattttattaccaacaatct
tttatatttttatttattcttcaaaagattttattaatttattctaattt
ttttaatagcgaacaaggaaaaaatcattttagggTACCTGGTATTTTCT
GGTATTTCCaagagagaaatttcaaatacaCACAAAACCAACGTTGAATT
CTCAAATTGTTTGGACTTAATTCTACTAAGTtattgttttagaaaattta
attctgtttaaaagaaaatatttttgttttatcaatttttatatATACAG
ATATTgtaaataataacaaaaacagtttttatcttcattcaaaatatatt
attttcaagCTTAATCCAAGAAGAAAAATAGACCCCCCCCTAAGAAGGAT
AGCCGATGGTCAAAGGCCAAAATACTTTTGAAGGATTTCATAAGTTTAGG
AGAGAGAAGGAGCATAATGTCTTGGTGACCAGGTGATATTGTAAAATCCA
AATCTAAATTTCTACAGAGAGCTCAAGGAGGATTTTCAATGAATTCAAAC
GAACAAATCTTTGAGATTAGTCAAAAACAATATCTCATGTCACAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_008731XLOC_008731Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00015650-exon-sc0000215-1491911889:85839..86315TCONS_00015650-exon-sc0000215-1491911889:85839..86315Clytia hemisphaericaexon
TCONS_00015650-exon-sc0000215-1510915933:85839..86315TCONS_00015650-exon-sc0000215-1510915933:85839..86315Clytia hemisphaericaexon
TCONS_00015650-exon-sc0000215-1575043694:85839..86315TCONS_00015650-exon-sc0000215-1575043694:85839..86315Clytia hemisphaericaexon
TCONS_00015650-exon-sc0000215-1491911889:86423..86565TCONS_00015650-exon-sc0000215-1491911889:86423..86565Clytia hemisphaericaexon
TCONS_00015650-exon-sc0000215-1510915933:86423..86565TCONS_00015650-exon-sc0000215-1510915933:86423..86565Clytia hemisphaericaexon
TCONS_00015650-exon-sc0000215-1575043694:86423..86565TCONS_00015650-exon-sc0000215-1575043694:86423..86565Clytia hemisphaericaexon
TCONS_00015650-exon-sc0000215-1491911889:88350..88538TCONS_00015650-exon-sc0000215-1491911889:88350..88538Clytia hemisphaericaexon
TCONS_00015650-exon-sc0000215-1510915933:88350..88538TCONS_00015650-exon-sc0000215-1510915933:88350..88538Clytia hemisphaericaexon
TCONS_00015650-exon-sc0000215-1575043694:88350..88538TCONS_00015650-exon-sc0000215-1575043694:88350..88538Clytia hemisphaericaexon
TCONS_00015650-exon-sc0000215-1491911889:89296..89493TCONS_00015650-exon-sc0000215-1491911889:89296..89493Clytia hemisphaericaexon
TCONS_00015650-exon-sc0000215-1510915933:89296..89493TCONS_00015650-exon-sc0000215-1510915933:89296..89493Clytia hemisphaericaexon
TCONS_00015650-exon-sc0000215-1575043694:89296..89493TCONS_00015650-exon-sc0000215-1575043694:89296..89493Clytia hemisphaericaexon
TCONS_00015650-exon-sc0000215-1491911889:89897..89932TCONS_00015650-exon-sc0000215-1491911889:89897..89932Clytia hemisphaericaexon
TCONS_00015650-exon-sc0000215-1510915933:89897..89932TCONS_00015650-exon-sc0000215-1510915933:89897..89932Clytia hemisphaericaexon
TCONS_00015650-exon-sc0000215-1575043694:89897..89932TCONS_00015650-exon-sc0000215-1575043694:89897..89932Clytia hemisphaericaexon
TCONS_00015650-exon-sc0000215-1491911889:90333..91137TCONS_00015650-exon-sc0000215-1491911889:90333..91137Clytia hemisphaericaexon
TCONS_00015650-exon-sc0000215-1510915933:90333..91137TCONS_00015650-exon-sc0000215-1510915933:90333..91137Clytia hemisphaericaexon
TCONS_00015650-exon-sc0000215-1575043694:90333..91137TCONS_00015650-exon-sc0000215-1575043694:90333..91137Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000215supercontigsc0000215:85839..91137 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0865839	0	0.0458722	0	5.35201	4.53607	2.6285	2.60552	1.31747	2.38508	1.21843	0.881043	0.944278	1.07983	2.18527	1.23522	0.993095	0.555213	0.767057	0.535113	0	0.170148	0.322645	0.143393	0	0	0.32981	0.0950288	0.0961013	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00015650 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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