TCONS_00015909 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00015909
Unique Name	TCONS_00015909
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	932

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000222:345495..348860+
coding sequence from alignment at sc0000222:345495..348860+

transcript sequence

>TCONS_00015909 ID=TCONS_00015909|Name=TCONS_00015909|organism=Clytia hemisphaerica|type=transcript|length=932bp
tacagcTTTGGAATCAACCAAGGGATGTTCAGCTCACCAAAACAAGCACT
TCGATTcctAGACGATCTACCTGCACTTGAGCGATATCATCTTATTCAAG
ATGTTGTATTCAAAGGCCAATTTCCCTTCGGAAGTTCCAAGAAAAAATCA
ACCGCTGATGAAAACTCCACAAATTCCAGTGTTTCTACAATGAGTATCTC
TAGtagtaaacgtACATTGGATGAGGGTTCAAAAGATACGAACAAGAAAC
CTGTTCAGAATGatgaaaaatcatcatcatcatcatcatcatcatcatca
tcaaagtcatctccaaagttaaaaaaatgttcAGAAACAACCACAGAAAC
CTCTAAGAAAGATGgACAATCTGATGTCACGACTGCTCAAAGTATCgata
attcaattcaaaactctAGCATCGATCTTACAAGAAGAATTCGATTCACC
AAAAGCGAAGAACAACAATTGCTGGATGGTGTTAAGGTACACGGGACTGG
TAACTGGTCAAAAATCCTCGAAGAGTACAACTTTCATCCATCTAGGACAA
ATGTCAGTTTGAAGGACAAATTCAGATTGTTAAACCAAGGAAAGTCATGG
GAAAACAAAACTCGCAAATCTCGAGTTCGTTTTTCTAAGAGAGAAGTTAA
GAATCTGTTAAAAGGTATAAAACGTTACGGTGTTGGTAAATGGGCTAAGA
TTGCCAAGCATTATGAATTTCACGATTCAAGAACCAACATTAGTCTTAAA
GACAAATATAGAACATTGCAAAAGCAAGGGTAATTTTAAGAAAGATTGTG
CCAGCACggaaaatattcaatatttcaCATATTTTACGCATCATTTTTTA
ACAACCGCGCCtttgtttcattttaaaacagatgtatattttctttactt
ttttcctTTGAAGAAAACAAATGACTTTTTCC

Run BLAST on NCBI

protein sequence of TCONS_00015909-protein

>TCONS_00015909-protein ID=TCONS_00015909-protein|Name=TCONS_00015909-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
YSFGINQGMFSSPKQALRFLDDLPALERYHLIQDVVFKGQFPFGSSKKKS
TADENSTNSSVSTMSISSSKRTLDEGSKDTNKKPVQNDEKSSSSSSSSSS
SKSSPKLKKCSETTTETSKKDGQSDVTTAQSIDNSIQNSSIDLTRRIRFT
KSEEQQLLDGVKVHGTGNWSKILEEYNFHPSRTNVSLKDKFRLLNQGKSW
ENKTRKSRVRFSKREVKNLLKGIKRYGVGKWAKIAKHYEFHDSRTNISLK
DKYRTLQKQG

Run BLAST on NCBI

transcript from alignment at sc0000222:345495..348860+

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00015909 ID=TCONS_00015909|Name=TCONS_00015909|organism=Clytia hemisphaerica|type=transcript|length=3366bp|location=Sequence derived from alignment at sc0000222:345495..348860+ (Clytia hemisphaerica)
tacagcTTTGGAATCAACCAAGGGATGTTCAGCTCACCAAAACAAGCACT
TCGATTcctgtaagattttttttttcgatcttGTCACATACAGTACccaa
attgattgaaatttaaGGGTATACTAATAATCATTCATATTTATAGTTAA
GATACAACattgtataaatattttttattcccactgaaattgtaatttaa
tcaaaattaacaattttggcggggattaaatttggcgtaTTTGTCGGTTT
AGGCTATATCCACCAAATTAATACGGCTGCTGATGATTTTCAGAACTGGC
TAACCGCTTAATGAAAGACCTAAACATAAAGATCAAATTAATTGTTAACA
TTTGTGGACACTAAAACATCCAATGTCTTAGATAGCACAAAATACTcgca
aaacattttaagaacatttgaacacttcaaactaaaaaagttacaaaata
tctgaaggcttcaaaattttttgatattcctatataaaaaagtgtagcTA
CCAAAAATGCCCCAAACTAAGTACACAAGTAATTCCTTTGTATGGAACAT
TAttatattgaaaatttctcttttatttCTACAGAGACGATCTACCTGCA
CTTGAGCGATATCAGTATGTTTCCATTTGATTTATCCAAGcaattcttca
taaaaaaatatatcatttatcGGTAGAAAATATATTATTCGTTGACAGAC
AGTGATGAGAAAATCACCTATTGAcgaatttttacaaaagtttttgttAC
TGTATTTTAATCACATTCTgttcagtagcgtggtgggtagaCATAAAGTT
GGAGAGGCAATTTTCGGAAATTGGGATTTTATCGCCCCCTTTTAAAAGTA
AAATGTCTTTGTAAAAATGACGCGGGCGAATgataatttttctctttttg
actGAAAACTGTTAATTCTAAGGTGTAAGAAAGCAAAGGGACGCCAAAAT
TAGTACAGTGGAACCTCttattagcggacaccatcgggggaaaggggtta
gtgtccgctaattagaagtgtccgccttttagaaacttttgatctcggag
ctccaattttgaaattaggccatcccagggtgtcgaaaatacaaaattgg
ggtctaaagtacttatctggaGACATTAGGCCATAGAAGAGCTCGAGTGA
CTGGCAAGAGGTTAAATCGAGGTGGTGGGTACGGACTTGAAGTACCAGTG
ATtttctttggcccacctaaattcgttgaatgggtcaagggaaaactgga
aatttgtagaaataatctgaaaaataagactaataagtgcttgaaataaa
aatatctaatatcaataattttctttttcaattttggacgtctgtgaccc
gtttgatattcaatgtccgctaattggagagctaaaataggggttttggc
catttcgtgcgaaaaaatttgtccgcTAATCAGAGGGTCCGCTAATTGAG
TGTCCgctttttagaaacttttttatgaggatttgactaggaaacggtcg
gggaaaatgaaattgtccgctaatcagaggtgtccgccttttagagtgtc
cattaattagaggttttactgtaatTAAAGTCACCTTTTCCGACCCTTGT
CTTTCGGCGCCCCCACCACCCATAGTGGTCCAGGTCAGGGTCAgggtccc
aggcaaaaaaataGGATGGAAAAGTAAGGAaataatgcgagcgaagcgtg
CACAAAAATTTTGGGCTGTTTACTctcttttttggataaaaacgtggtga
tataaaaaaaatagaagaaatagtCAGCCCCCAACTTTGCCATTGAAATT
CCAGGCCCCCTCAAACATATCAGGTCCCCAAAAATATTTGGCTGTATTTT
AGCTCCCGGTTTTCATTTGCATTTCTTTtggtgtaacccccccccccgaa
aagCCAGGGGAGGTTGACGCtatgccaccacgctactgattTTGTTATTA
TTTCTTACATACTGTAATTCATATGTAATTCAAATTCCCTTCTATAGTCT
TATTCAAGATGTTGTATTCAAAGGCCAATTTCCCTTCGGAAGTTCCAAGA
AAAAATCAACCGCTGATGAAAACTCCACAAATTCCAGTGTTTCTACAATG
AGTATCTCTAGGTATAAAGTTTCTTTTGTATGTtgtaatttttccaaaag
catAATTTTCCCACAAGGAGTTTTTTAATTGAGTATTAGAAAGAACTCGT
TTCTCAGGCTTGAAAAAGTAACAcgtatttttatcgttttttcagtagta
aacgtACATTGGATGAGGGTTCAAAAGATACGAACAAGAAACCTGTTCAG
AATGatgaaaaatcatcatcatcatcatcatcatcatcatcatcaaagtc
atctccaaagttaaaaaaatgttcAGAAACAACCACAGAAACCTCTAAGA
AAGATGGTAAGCCCGatagaaagtttaaaaaaagttttttcttcctTGTT
AAATTTCTTATCTTAGCAGAGACAGGTTTTGAGGTAGGCTTGAATAAATT
TATCGAATACAATATCAAAAAGATTGGAACCATAAAACAACTCAAAGGAC
CAGGGGGTCATGATTACTATAATTAGTATTTAGTGCCTTTTGAGTCCAAA
GTTCtacaccaccaccctttgaaTTTAATACGTATCTTTAATAACTGCTT
TTcagttgaaattttgcatacaCCACCCGCCTTTGTGAGCCTTTTGTCCC
CAAAACGGTGGTAGGTCGGTTAGTAACGCGTCAAATTTGAGGAAGTTTCT
TTGGCTGTTTGTCGTAGTAattaaaattcaataatttctttattttaggA
CAATCTGATGTCACGACTGCTCAAAGTATCgataattcaattcaaaactc
tAGCATCGATCTTACAAGAAGAATTCGATTCACCAAAAGCGAAGAACAAC
AATTGCTGGATGGTGTTAAGGTACACGGGACTGGTAACTGGTCAAAAATC
CTCGAAGAGTACAACTTTCATCCATCTAGGACAAATGTCAGTTTGAAGGA
CAAATTCAGATTGTTAAACCAAGGAAAGTCATGGGAAAACAAAACTCGCA
AATCTCGAGTTCGTTTTTCTAAGAGAGAAGTTAAGAATCTGTTAAAAGGT
ATAAAACGTTACGGTGTTGGTAAATGGGCTAAGATTGCCAAGCATTATGA
ATTTCACGATTCAAGAACCAACATTAGTCTTAAAGACAAATATAGAACAT
TGCAAAAGCAAGGGTAATTTTAAGAAAGATTGTGCCAGCACggaaaatat
tcaatatttcaCATATTTTACGCATCATTTTTTAACAACCGCGCCtttgt
ttcattttaaaacagatgtatattttctttacttttttcctTTGAAGAAA
ACAAATGACTTTTTCC

Coding sequence (CDS) from alignment at sc0000222:345495..348860+

>TCONS_00015909 ID=TCONS_00015909|Name=TCONS_00015909|organism=Clytia hemisphaerica|type=CDS|length=3915bp|location=Sequence derived from alignment at sc0000222:345495..348860+ (Clytia hemisphaerica)
tacagcTTTGGAATCAACCAAGGGATGTTCAGCTCACCAAAACAAGCACT
TCGATTcctAGACGATCTACCTGCACTTGAGCGATATCATCTTATTCAAG
ATGTTGTATTCAAAGGCCAATTTCCCTTCGGAAGTTCCAAGAAAAAATCA
ACCGCTGATGAAAACTCCACAAATTCCAGTGTTTCTACAATGAGTATCTC
TAGtagtaaacgtACATTGGATGAGGGTTCAAAAGATACGAACAAGAAAC
CTGTTCAGAATGatgaaaaatcatcatcatcatcatcatcatcatcatca
tcaaagtcatctccaaagttaaaaaaatgttcAGAAACAACCACAGAAAC
CTCTAAGAAAGATGgACAATCTGATGTCACGACTGCTCAAAGTATCgata
attcaattcaaaactctAGCATCGATCTTACAAGAAGAATTCGATTCACC
AAAAGCGAAGAACAACAATTGCTGGATGGTGTTAAGGTACACGGGACTGG
TAACTGGTCAAAAATCCTCGAAGAGTACAACTTTCATCCATCTAGGACAA
ATGTCAGTTTGAAGGACAAATTCAGATTGTTAAACCAAGGAAAGTCATGG
GAAAACAAAACTCGCAAATCTCGAGTTCGTTTTTCTAAGAGAGAAGTTAA
GAATCTGTTAAAAGGTATAAAACGTTACGGTGTTGGTAAATGGGCTAAGA
TTGCCAAGCATTATGAATTTCACGATTCAAGAACCAACATTAGTCTTAAA
GACAAATATAGAACATTGCAAAAGCAAGGGTAAtacagcTTTGGAATCAA
CCAAGGGATGTTCAGCTCACCAAAACAAGCACTTCGATTcctAGACGATC
TACCTGCACTTGAGCGATATCATCTTATTCAAGATGTTGTATTCAAAGGC
CAATTTCCCTTCGGAAGTTCCAAGAAAAAATCAACCGCTGATGAAAACTC
CACAAATTCCAGTGTTTCTACAATGAGTATCTCTAGtagtaaacgtACAT
TGGATGAGGGTTCAAAAGATACGAACAAGAAACCTGTTCAGAATGatgaa
aaatcatcatcatcatcatcatcatcatcatcatcaaagtcatctccaaa
gttaaaaaaatgttcAGAAACAACCACAGAAACCTCTAAGAAAGATGgAC
AATCTGATGTCACGACTGCTCAAAGTATCgataattcaattcaaaactct
AGCATCGATCTTACAAGAAGAATTCGATTCACCAAAAGCGAAGAACAACA
ATTGCTGGATGGTGTTAAGGTACACGGGACTGGTAACTGGTCAAAAATCC
TCGAAGAGTACAACTTTCATCCATCTAGGACAAATGTCAGTTTGAAGGAC
AAATTCAGATTGTTAAACCAAGGAAAGTCATGGGAAAACAAAACTCGCAA
ATCTCGAGTTCGTTTTTCTAAGAGAGAAGTTAAGAATCTGTTAAAAGGTA
TAAAACGTTACGGTGTTGGTAAATGGGCTAAGATTGCCAAGCATTATGAA
TTTCACGATTCAAGAACCAACATTAGTCTTAAAGACAAATATAGAACATT
GCAAAAGCAAGGGTAAtacagcTTTGGAATCAACCAAGGGATGTTCAGCT
CACCAAAACAAGCACTTCGATTcctAGACGATCTACCTGCACTTGAGCGA
TATCATCTTATTCAAGATGTTGTATTCAAAGGCCAATTTCCCTTCGGAAG
TTCCAAGAAAAAATCAACCGCTGATGAAAACTCCACAAATTCCAGTGTTT
CTACAATGAGTATCTCTAGtagtaaacgtACATTGGATGAGGGTTCAAAA
GATACGAACAAGAAACCTGTTCAGAATGatgaaaaatcatcatcatcatc
atcatcatcatcatcatcaaagtcatctccaaagttaaaaaaatgttcAG
AAACAACCACAGAAACCTCTAAGAAAGATGgACAATCTGATGTCACGACT
GCTCAAAGTATCgataattcaattcaaaactctAGCATCGATCTTACAAG
AAGAATTCGATTCACCAAAAGCGAAGAACAACAATTGCTGGATGGTGTTA
AGGTACACGGGACTGGTAACTGGTCAAAAATCCTCGAAGAGTACAACTTT
CATCCATCTAGGACAAATGTCAGTTTGAAGGACAAATTCAGATTGTTAAA
CCAAGGAAAGTCATGGGAAAACAAAACTCGCAAATCTCGAGTTCGTTTTT
CTAAGAGAGAAGTTAAGAATCTGTTAAAAGGTATAAAACGTTACGGTGTT
GGTAAATGGGCTAAGATTGCCAAGCATTATGAATTTCACGATTCAAGAAC
CAACATTAGTCTTAAAGACAAATATAGAACATTGCAAAAGCAAGGGTAAt
acagcTTTGGAATCAACCAAGGGATGTTCAGCTCACCAAAACAAGCACTT
CGATTcctAGACGATCTACCTGCACTTGAGCGATATCATCTTATTCAAGA
TGTTGTATTCAAAGGCCAATTTCCCTTCGGAAGTTCCAAGAAAAAATCAA
CCGCTGATGAAAACTCCACAAATTCCAGTGTTTCTACAATGAGTATCTCT
AGtagtaaacgtACATTGGATGAGGGTTCAAAAGATACGAACAAGAAACC
TGTTCAGAATGatgaaaaatcatcatcatcatcatcatcatcatcatcat
caaagtcatctccaaagttaaaaaaatgttcAGAAACAACCACAGAAACC
TCTAAGAAAGATGgACAATCTGATGTCACGACTGCTCAAAGTATCgataa
ttcaattcaaaactctAGCATCGATCTTACAAGAAGAATTCGATTCACCA
AAAGCGAAGAACAACAATTGCTGGATGGTGTTAAGGTACACGGGACTGGT
AACTGGTCAAAAATCCTCGAAGAGTACAACTTTCATCCATCTAGGACAAA
TGTCAGTTTGAAGGACAAATTCAGATTGTTAAACCAAGGAAAGTCATGGG
AAAACAAAACTCGCAAATCTCGAGTTCGTTTTTCTAAGAGAGAAGTTAAG
AATCTGTTAAAAGGTATAAAACGTTACGGTGTTGGTAAATGGGCTAAGAT
TGCCAAGCATTATGAATTTCACGATTCAAGAACCAACATTAGTCTTAAAG
ACAAATATAGAACATTGCAAAAGCAAGGGTAAtacagcTTTGGAATCAAC
CAAGGGATGTTCAGCTCACCAAAACAAGCACTTCGATTcctAGACGATCT
ACCTGCACTTGAGCGATATCATCTTATTCAAGATGTTGTATTCAAAGGCC
AATTTCCCTTCGGAAGTTCCAAGAAAAAATCAACCGCTGATGAAAACTCC
ACAAATTCCAGTGTTTCTACAATGAGTATCTCTAGtagtaaacgtACATT
GGATGAGGGTTCAAAAGATACGAACAAGAAACCTGTTCAGAATGatgaaa
aatcatcatcatcatcatcatcatcatcatcatcaaagtcatctccaaag
ttaaaaaaatgttcAGAAACAACCACAGAAACCTCTAAGAAAGATGgACA
ATCTGATGTCACGACTGCTCAAAGTATCgataattcaattcaaaactctA
GCATCGATCTTACAAGAAGAATTCGATTCACCAAAAGCGAAGAACAACAA
TTGCTGGATGGTGTTAAGGTACACGGGACTGGTAACTGGTCAAAAATCCT
CGAAGAGTACAACTTTCATCCATCTAGGACAAATGTCAGTTTGAAGGACA
AATTCAGATTGTTAAACCAAGGAAAGTCATGGGAAAACAAAACTCGCAAA
TCTCGAGTTCGTTTTTCTAAGAGAGAAGTTAAGAATCTGTTAAAAGGTAT
AAAACGTTACGGTGTTGGTAAATGGGCTAAGATTGCCAAGCATTATGAAT
TTCACGATTCAAGAACCAACATTAGTCTTAAAGACAAATATAGAACATTG
CAAAAGCAAGGGTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_008887	XLOC_008887	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00015909-protein	TCONS_00015909-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000222	supercontig	sc0000222:345495..348860 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.156503	0.243976	0.117203	0.169377	0.198522	0.313749	0.845318	0.962298	0.82701	0.931226	0.845149	0.362227	0.0486498	0.0338918	0.236335	0.292317	0.331531	0.188783	0	0	0.0948877	0.292582	0.0579774	0.242328	0.316107	0.230981	0.35972	0.789892	0.256358	0.361353

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR017930	Myb_dom
IPR009057	Homeobox-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00015909 vs. Swiss-Prot (Human)

BLAST of TCONS_00015909 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00015909 (transcript) - C. hemisphaerica