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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016211 ID=TCONS_00016211|Name=TCONS_00016211|organism=Clytia hemisphaerica|type=transcript|length=2026bp
TCGTCAGTGCAGATAAATTTAAAAAGCTCTTTCAAATTTGATAGATTATA
agatataaataagaaaaattattgTTTCGTTGACGAaacctttggaaaaa
aataaataacataAAACAACATGGACCAATCGAGAAGTTCTTTTGACAAT
ATGGCACCAGCAGTAACAACATCATTTCTGGTAGATAGTATTTTAAATCA
ACGACAACAAAGTGTAGATGTCTTCGAAAATAGACTTTCATCTCCTCCCA
TGGATCCGCACTATAGTGGCCCCCCGCCACCACATGGTTACCTAGGTTAC
CAACCATGCGCACCACCTTATCTTTACGGTGGTGAGCGTCGAATTCCGAA
GTGGGAACGTCATGATCCGGACGACGCATCAAATAATGGAGGAACGTCGC
CGATAAGTCCTAGATCACGACTACCTGGTGATTATATGGCTTCGCGAAGG
GCTGAAGAACTTATGGCGTTTGGTAATATGAAGAATGAACCCGGACGGTT
AGAAGTAGACCCAGGGTTAAGCTGTATGGTTGCAGAGGCAGAGAGAAAAG
CTGGACATAATCATTATGATACAAACAGTGACCCATCGATCAATACAACA
ATTTTACCGACAGTTCAGCCGAAAACCGAGTACGACCCGACATCACACGA
CATGCATGCGACAAACGAACAACTTGTACAACAAATGCACCATCAAACGA
CGACAAAACCAATTCGAAAGAAACCAAGGATTTTATTTTCACAATCTCAA
GTTATGGAGTTAGAGAAGAAATTTAAAGAACAAAAATATCTATCAGCTTC
CGAACGTGACCAAATGGCATCAAAATTAAATCTAACACCAACACAGGTCA
AAATTTGGTTCCAAAACAAAAGGTACAAGTGCAAGAAACAATCACAAGAA
TCCAGGCGTGGAATCCACCCACCTCCCTACGAATGGCCTTCACTCTTCAA
CCACCAACGTAATGTTCCTGTCTTAGTACAACCACCATCATGCCCGCCCC
ATTGCTATCGCCCTTCGCCACCATCGGTTAATTTAAACTCGCCTATCCCG
AGTGAAAGCTATACCGGTTATTTTCCGGAAAGCTACACTGCTCCACATTA
CAATAACAATGTTTATTCAACTTCACCTTATAACCAATGGCCGTGCTACA
AGTGATACCatattgaattaaaaattaCGGTGCTCAGTGGGATCTAATTG
GTTGGATCAAGGAGTAAATGATGCTTTTTCTTCGTACGATGGTCTAAAAG
TTCTAACGGGAAAAATGAAGCTAGGTACATGTCAAGATGGACGGAAATGA
TGACCTAAACTGAAAATTGAACCTTTTTCTAGAAGCAAGAAagacttatt
tatttttttactaaaaGCGACCTGGCTGTCGCTCTTGCTTTCGAAATAAG
AGAAGaacaaaattctttattttgaaaaaacggaGGAATGAAACACgctg
taaatattttttcatatacattgtacatattttttgtttttttgttgttg
tttttaagaTAGAAAAGATAGGGTTTTAGGGAAATTATAATTGCTGTAAA
ATAGTGTGCGGACGAATTTCTCAGAGGAAAATATTGTGATGGAGACCAAA
GATTGACAATTTTTCCGTGGTCACACAGTAAAAAAGGCTTCTACAGCCTG
GTTTCCATACAAAGGTTTATTACTTTTGGGTACTTTTAAAGGTCATGATT
AAAACAAGGATGCTTTTGTTGGGATCTATTGTCAATGATCAAGTTTTGAC
AAGCTTTAGCCTGCTCCTGCAGCCAGTAGAAAAAATACTTTCACAATCGT
CTTTTATGCTGTTTTTGGCTATAAAAACAATTTATGGGTCTTTTGATACT
AAACATATCTCTGAGAATAAACCTCTTGAAATATCATTTTTGGTGAGGAC
GCATTTTTAACTTATTTTGTTTTATCGCaatatatattttgaaagagata
ttttttaaaagaaatctttttttttgtacaGAGTTACTGTTTATTAGGAA
TATTTTGTTGGAATTGATATTAAAAA Run BLAST on NCBI protein sequence of NK2a homeodomain transcription factor protein >TCONS_00016211-protein ID=TCONS_00016211-protein|Name=NK2a homeodomain transcription factor protein|organism=Clytia hemisphaerica|type=polypeptide|length=344bp
MDQSRSSFDNMAPAVTTSFLVDSILNQRQQSVDVFENRLSSPPMDPHYSG
PPPPHGYLGYQPCAPPYLYGGERRIPKWERHDPDDASNNGGTSPISPRSR
LPGDYMASRRAEELMAFGNMKNEPGRLEVDPGLSCMVAEAERKAGHNHYD
TNSDPSINTTILPTVQPKTEYDPTSHDMHATNEQLVQQMHHQTTTKPIRK
KPRILFSQSQVMELEKKFKEQKYLSASERDQMASKLNLTPTQVKIWFQNK
RYKCKKQSQESRRGIHPPPYEWPSLFNHQRNVPVLVQPPSCPPHCYRPSP
PSVNLNSPIPSESYTGYFPESYTAPHYNNNVYSTSPYNQWPCYK Run BLAST on NCBI transcript from alignment at sc0000231:36432..51211- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00016211 ID=TCONS_00016211|Name=TCONS_00016211|organism=Clytia hemisphaerica|type=transcript|length=14780bp|location=Sequence derived from alignment at sc0000231:36432..51211- (Clytia hemisphaerica)
TCGTCAGTGCAGATAAATTTAAAAAGCTCTTTCAAATTTGATAGATTATA
AGATATAAATAAGAAAAATTATTGTTTCGTTGACGAAACCTTTGGAAAAA
AATAAATAACATAAAACAACATGGACCAATCGAGAAGTTCTTTTGACAAT
ATGGCACCAGCAGTAACAACATCATTTCTGGTAGATAGTATTTTAAATCA
ACGACAACAAAGTGTAGATGTCTTCGAAAATAGACTTTCATCTCCTCCCA
TGGATCCGCACTATAGTGGCCCCCCGCCACCACATGGTTACCTAGGTTAC
CAACCATGCGCACCACCTTATCTTTACGGTGGTGAGCGTCGAATTCCGAA
GTGGGAACGTCATGATCCGGACGACGCATCAAATAATGGAGGAACGTCGC
CGATAAGTCCTAGATCACGACTACCTGGTGATTATATGGCTTCGCGAAGG
GCTGAAGAACTTATGGCGTTTGGTAATATGAAGAATGAACCCGGACGGTT
AGAAGTAGACCCAGGGTTAAGCTGTATGGTTGCAGAGGCAGAGAGAAAAG
CTGGACATAATCATTATGATACAAACAGTAAGACAAATATATTTCTGTTT
CTGCGATTTCATGTTTTTGATGGATTCGTCGTAGTCTAAAACAATCCCAT
CTCACAGACCCGGTTGGACCCCCTTTCACTAACAAAATAACGCCGATAAA
TATCGTCCCAGTGTAAAATTATACTCCGTGCTATTATTTCCATTCCCACT
GAGTTTTCTGACTTGAAAACAATGGATCTCAAATCCCCAGCGATAATAGA
CATTTGAAGATCAATCCCCATCGAGTTTTAGTTCTTTATTTTTACCCCTA
CCAGAAAAATCCTACCGGGTCAATGAGAAGCTTTGTAGGGTTGTTTTAGA
CGCTATCTCATAAAATCTTGCATTACTACATAGTCTAGTCTTTCAGTTGA
TGGTTGTGGTATTTGGGTGACATTGGTCAATTAGGAATGTGTCTTTGTTT
GAATGTCTAAAAGCCTACGAAGGGGATCTTTTCAAAGAAAACCCCATTGA
AATAACTGTCAAGTAGCCTTCAGTTAAAACCTCAGATCAGTCTAAAATGA
CATTTTTAGGAAAGTTTGGATATTATTTGTTTGGCACTCAGACTTATTTT
CAAGCACTCGCCAGAAAATTCTTTCAAAAAGTTGGCAAGCAATTGTATTC
TTTTAAGCTTGTGTGAGAATTATGTTCTTTAAGTTTGGAATTTTGGCAAA
CGTTGTCTTTATGAGGCTTGAAATTTCAAAATAGTTGAGCAATTTCTTAA
AGCAATATCTTGAAAATATCTCCCACATTTCAAAAGATGAACATTTGAGC
AAAATTTTAGTGTAGGCTCTATGTAAACTACTTGAAAAATCATAATCTAT
CAGATTTATTTTTAGAATAGAATTTAAAGTAAACGCAGGCTGCTAGCAAA
AACGCCTACGATTTTGTTAAGTCAATAACATGAATTCTAAGAACTCAACA
ACATGGGGAAACCAACCATGGTTCGTTTTCTGGGGTTGATTATATAGGGT
ATAATATTCCTAAACTTTCCAGAACGATTCGCAAAACTATGTTTTCTATA
ATTTTTGACATTTTGTTACTTTTTTTTTCTCCTCTCCCAAAAAAACATCG
TCAAAAGGTAATTTCGGAAAATTTATGAATCTTTCCCAATGCTTAAGACT
ATTAGATTATCTGCCAGTCTTGGAAAAATGAAAAAATGACCCAACCAATG
TAACGCTTTTGCAATTTTATCCGTATCAATATCAGAAAAGGCGCATGGTT
AATCACAATGAACTCTCAGGAAACTATTTGAGACCCCGAAAAATATAAAA
ACAGAAGAAATTATTAAGAAAAGAATATTTTTTTATCTCCATGAGTTCCA
GATCGGGGACGAGCAAAAAGTAAGGCAGTAGAAAAAGAAACCCTTCTGTA
AAATGTCTTTTTGACCCTTTAGAGAAATTCGGAGAAATAAGAAAAATTTA
AAAATTCAGTAATGCTGAAACCCAAAAAATCTAAAGCGTAAAATCCCATT
GAATCCAATTCTCACTCAACCTTCAAACTCAACTTTACGAAAAACCATTT
TCAACAACTGAGCAACATACTTCACTTAACATTTAAAGAAAATGACGAGA
TTCTAAAGTTTGAAAAGTACTTTTAAAGGGTGTATGTATAGAATACGACG
TATAGAATTCATTTTAGAAGACATACTTTCTGTTAAAAGTGGTCCTCTAA
TAAACTACTCCAAAGTTCTTCCCACCTACTTTTACTGAAGGGCCTCACAG
ACACATATACTGTAAAAATATGTTACTTTTGGAAAATTGACCCAAGCACA
GAGGACAGCACGCATTGTATTCAAGCTTATAAAATTTATTTTTAGGTATT
GCTTTAATTAACAATTTGACAGTTTGACAGTCAATGCAAATGATTTTTTT
TTTCAAATTACAAGACATACAAGATCATACTTCTAGGTGAAAATTTTGTA
AATTTAGTAAAAAACCAGTAAACCAGTTCTTGTGTTCTTAAAGAACCTTT
GAGCCTAAACCGAATTACATAAATTATTCCAGGTTTTCATCCGGTTATAT
TTTACTGACTCGACCCTTAATTTCTTAAAATTTGGCCATTTAAGATTCTG
GGTTAGTTTTTATTAAATAGTTTGTTATTTTCGGCGAATTAGAGTACATA
TCATCGTTTTTATAAAACTGTGCTAATAAAAAAAACGTCTTTATTGGGTA
CATTACTTGAAGATAAAATATTTCTATCTTCAAAGACTTCAAAGTCTGGT
TTCGAGAATCTTTTTAGTTTGAAATTTGCTCAATTGTACAAACAAGACAT
TTTTACAGGCTTCCAACTGAAAAAAAATCTGGGCGTTTTTCCCGACTTTC
TATTTGCTTAGTGAAAATAGAACGATGATTTTTTCAAAGTATCATAATCT
TTTCCTGATTTGAGACCTGAAAGATTTGGGTTTTTTTAAGGCTTTTTATT
TTTATAATGGCGTCTGTAAATTGAACTTTTGAAAGGAGGCAGGCTAAACA
ATCACATTTCAATCAGAATTTGTTCAAAGAGTAGTTGATTACCATGCTCA
GAACCTCCTTTCATGTACAAAATTAAAACGCCTTTTTGTTTGACAAGGGA
AAATATATTTTATTTTTGAATCAAACTTTACATCCAAACTTGATGTCTAA
GTCCTAGTCCTAAAACCTCAGAGCCATTTCCAGATAATCTTATGGAATGT
GGTTACAACTTTAAGGCAACACTTGATCAATTGAAAGACATTGATTCAAA
GACTCAAATGATATAGTGAAAACGTTTCTTGAACTTCCTCAGAAATTTAG
ATTGTAAGGGGGTGCACTTTTTTATCTAGAGCTATCGATAAACCGAAAAG
ATTTCTTTCAATTAAAGATTTACCAATAAGTTTTTCGTCCAGTTACCGAC
TTACCGATAAGTTTTTCGATTAATTACCGATTCCCAATAAGAAATCACTA
TCTTAAATTAGAAAGCTGTACAACTATCCCCTTAAAGGGAATTTTGCATA
ACTCCAAAAAAGGAGCTACTGCAAAGCTGATACAAAACTTGCAAACAATA
TTTATGAAAGTCTATGATATCTAAACGTCAAAACAATATTGTGTGTAAAG
CTTGCGTTATGATTGTAATAATTTCCTATGGAACATTGAACTATGTCATT
GCCAGTTTGAAATTTATGTTATTTTTCTCTAATCATAGATTCATTTGTAA
TAACGTGTACGAAATTTTTGAAACCGAAATTTCGAGAGGAACCATTATCG
GGTCTTTGAAGCCAAGACATTTTTATGGATTGGCTAAAAGCAATAAGGAA
TTTCAGATTACTGATTATTATAAAAAGCCTTGACTACTTTTTAGGATGGC
CTTGTTAAAAACTGTGTAAAATCAAGAGCCCAATGACAAAAATACCAATC
TGACACATTTAGAATTAAGCTTGGATTGCAATGATGACATAATCTTAAAT
CTATTTTCTTTCTATTTGATTTTTGACGACGTCAGTACTGTCACGGATAA
ACATGGTTAGTGCACCGGTCGGGAGAAATGTGACGCTTGTAATGTATAAA
TTGGTAAATGTATTGGCGATTGAGCCTTGATTCCCATCATTAGAGCATTT
TTACCTGTAAATTGCCAAACATTCTCCAACAACAAGCCATCTTTGCTTGA
TTTATGTATGACATGTTAATTTTAGATAGAATACTTATCCTTAATATAAA
AAATACCTTTAAAACATTTTAGGATAATTTTCCCTATGATGAAATGGAAA
AACAACTTTCTTATAAAAAATTGAGTATCAGTCGAAATGAAAACTGTAAT
CTTTAATTTGAATATTTACCATTAAATTTGTTTGGGAAGTTAAAAATCAT
GTAAAAATTAATTAGATTTTACCATAAATCAGAAAAAAATACAGCAAAAT
TAGCGCGATTAAATCAATTCAAAAACCAAGTGCTTTTGAGGTTTTGTAAC
AAACGTGAGCGCGTGATGATAATTAAGAATTTTTCTTCCCTTCTCTAAAA
AAAAGAAAATTAAATTTTATAAAGTGTCAACGGGATCATGAAAACCATTC
TGTTTGGAAATGGGTTGGTTTTTCGAGGTTTTCAAACTCTATAAAGTTTT
AATAAAAATTGTCATCCGCTGTATTTTTAAACGCGTATAAATTTTAAAGA
ATATTTTATTTTTCTGAACAAAGCAAAATTACTGAACTCAAGTATATAAT
GGCTCATTGTTAATGATAATTTGGGTAAGAGTGCTAATATTTTAGAGAAT
TCATGCTAGATAATATTGTAGGAAACTGGTATAGCGATATCAGTAGCGGT
ATATCAGTGTGGATACTTCCAAAACTTCTAATAATTAAAAAACTAGGCCG
ACACTCCTAACAAAACAAGTGCAGTAATAGAAACTTTTAAATAGAATCAT
CCAAACTGACAAACAATGCTTGAAGAACTCTTATTCTGGAATTGTGCTTT
ATTTTTTGCTTGCATTTTCAGCGAATGATTCGGTTTAATAATCATGTCGA
ACAATTTCGAGAACAGGGATTAAAGATGGGAAAACGATAAAAAAATATGC
TCGTGGGATAAATTTATACCTAATATTTTCAATTTAACTTCATTTTGCAA
AGCTGCCAGCCCTATATAATATCAAAAGACTCTTATCTGATTCCTGCTTG
CTGATGTTGATGCTGATGAAAAACGTTTTACCTTCATATTTATTTATTTC
AATTGTTCCAATTTTTAAACCCTTATTTTTCCCAGTGAGACCTCTAATTC
CCCTCAATTCAGACCCAGACGCATTGACACCCCTTCTCACAGACCCGGTA
GGATTTTTTCAGCCAGTAGGGGTAAAAATAACGGACTGAAATTCGATGGG
GATTGATATTCCTATGTCTGTTATCGCTGGGGATTTGATTTCCATTGTTT
TCAAGTCCGAAAATTCAGTGGGAATGGAACTAATAGCACAATATTTTTCA
GTGATGATTTATTTAAGAGTATTTTCAGCGGGAACAAAAATAATTTTCCA
CTGCACTGGGGACGATATTTTAGCCAATTTTTCCCATTTCTCCAGTGGGT
CAGTGAGAAGGGGGTGTGCATTAGACCATATTTAATTGCACTCGGCACGT
AGCCATTGTACATGACTAGGGGAAAAAATGATCTTAAAACAAAACATGAT
GAAATACTATCAGGTTTATGTTTTTGTTAAAAACGGTCTCATGGATAAAG
TTCTCAGGGTACTTGAAAGTGAAAATATGTAAAGCATTTCTGCTCATCAA
CTTGGCTGATGTTTCTAAGGTGTAAACAGCCTTTTAAAATTTAATACCCT
CTTTTTTCTTCGATTCCCATACACAGCTACACAGCACAATTTGGGCGCAT
TTCTTTTTTCAAAAAAATATTTGACAATTTGAGCTTTGTTATTATATACT
AGTGTACATTAGTGTTTAAAATGACTCAGAGAAGGATTATCTTGGTCCGG
AATTACGTCAAGAATGGTTCGAACGAACCATCAGTATGGATAACCAGCTN
AGGATTATCTCGGTCCGGAATTACGTCAAGAATGGTTCGAACAACCAATC
ATTAGTAAATTTTTGAAGCCTTCGTATGTTCTTAACTTTTTCAAGCCTAA
AAATGTTATTCACATATTTTTATGTTCACCATTTTTTTGAGCATTTTTGC
CCATTTTCTAAAAAACCGGCTGTTTTAGAGTCGGCAACCTGTTCTTAACA
TTATGGCCATCGAAGCCTTATGTTCTTATATAGTTTGTTCTTATAAAAAA
CGTGTACTCTCTCGATTTGTGAAAGGAGAATTCAAACATTATAGCGAGAA
TAATTAGCATTCTCGCACTCAAAGAGTAGATTATCTCATTCATGCTTTCA
CACAGCAGTAGTCTAGATATCCAGGCTGTAAACTTCTTTTTTATTTTTGA
TATTTCTAGGCTGAAATTTTGCCAACCTGGGTTTAAAAGCATGTAAGTAG
CCCAACAGTTTCCACTCTAGACGTCCAGGCTAACGCACCGAGTCCCAACA
AGTTGATAGTTGATAGTCAACCTGAACTCCTGGAGGCGTACAGTATCGGG
GGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCGGG
CGTACAGTATATCAAAGACCTCGTAGAAATCCCTGCATATTATGGATATA
CGGAGGAAACTATAGTCTATTTACCCAAAAAACAAGGAGATTTATTTGAT
TCAAGGAGCAAGGTTTAAAAGGTTTTGTTAAATGAAGGGACGATAGAGCT
TATTCGAGTTAATAGACATTCGAGTTATAGAGGCTCGAGTTAAAGAGACT
GTATGTTTTCTATAAGCATAACGTTTATAAGCATGACGTTTATCAATTTT
TGGTACCTAAACAATGGCTCTATTGTTTGAGAACAATGAATGCTAAGCAT
AATGCAAGCCTGGAATAGGGACAGACACTTGCTTATGAAAAAAACATGTA
TACTGTATTCTAAATTAAAATGATTACCTTTTTTAACTGAATTGAGTACC
TGTCCACAGAAGCAATTCATTTTGGCACGTCCAAAGTTTCCCAGGAACTG
CACCCAATTGGAATTTCTTCACACCACCAACAAAAATGACATTTCAAATC
TAAAAATAATAAATATTGATGACTTTTTTAGTATAATACCCCTTCTTTTT
CTTTGCAATACGTAATTAGAGGAAATTTTTTGAAGAGCCTGAAGTGTATT
TTACAACGCCTCTTCATTTTATGATGCAAAAAGCATAATGACATCATAAA
TATAAGAGGGTGTAATGTAGAAGACCAATCAATCTTATTCAAGTTTAAAT
GCTGAGTGGCTATTTCCTTTTTTGTACAATGAGGATTTAGATTGACAAGA
TTTGTAGGGGTTACATACGGTGCAACATTTAGTAAGGGTCCAAGTATGAA
TTAAAAACTTCGCAGATTTTCACGCACACGCTGAAGCACCATAAACACCT
TAATTCGAATTTGCATTATTCAATAATATGGATGTTCATTTTCAAGATAA
TTTTATTCGAGGATTAAATATTATAAAGGATCTTGAAAATTTTAGAAAAA
TTCTTGGTCCAAAATTTCCCAAAACAAAATTAATTTGTTTGTTGCAAAAA
TTGTGGTAGAATATTTCAAACTGAATATCAAAACTTCATTTAATCGATAT
AATCATTAAAATACTGTGACTAAGGACTTTTTTACACCCCCTTCTCACAG
ACCCGGGAGGATTTTTTCAGCAAGTGGGATAAAAATAACGGGCTGAAACT
CAATGGGGATTGATATTCTCATATTTCTATGGCTGGGGATTTCAATTCTT
TTGTTTTTAAGCCAGAAAATTCAGTGGGGATGAGAAAAATAGCATAATAT
TTTTGAGTGAGGGTTGGTTTATTTGATTATTTTCAGTCGGAACAAAAATT
GGAGGATCATTTTGGTAAATTTTTCCAGTGGGAAGGGGTCCCAGTAGGTC
TGTGAGAAGTGGGTGTTTTTTCGGGAAATTTACTTCTCACAAATAATTAA
ATGTAGGGAAGATATTCTAAAAATAACAAAACAAAGTCGGAAAACAAAAA
CATATAAACAGAAAAACAAATAAAAAGGATAAACAATATTAAAAGTACAA
ACAAAACGCAAAATAAGTTCACCATCTTTTTATTTTGTTTCTAAAAGTGC
AATAGAATTAATCGGGGTGATTAATTTTCTGACAGGATAATAAAAAAAAT
TGTGATGGTTATTAATTCAAAGGGAAAGCTATGAGAAAGTCTATTATTTG
CTTTTCCAGCTTTAGCTTGGTCAGAGTTTGAAATTTGAAGTTTTGGAGAA
TAATTTGCAAAATTTATACTTTGAGAGTTTCACACAATGGAGCAAATTTC
ACCAGTGACTAATTTTGAGTTCAATGCACAGAACTTGAATTTTGTTTTCT
ATGATTCGTATCCACAAGCCTTCTGTAAGTTTTTCAGAATTCATTTCGTA
GATTTTCAATTTCCTTGGCGTTCTTTCCGCAGTATTTCTGTTGAATTATT
TTGACCTATTCAAAAAAAGAACAATGTTCTTGTGTGTAATACTCTGGAAC
TAAGGCGTTCAAATATGCACACATTGATTTTTTACATAATTCAAAACATT
TCCGATTTCCGACATAAGTCCGTAAATTGGTTTATCCGGTATCGATCGGT
CTTATTCTAATTGGGTCATTTGTTTTGAGCTTTATTGGTTCTTAGAAAAA
CTTCTAAACTGCCTTTCTAAATCGAAGCTCTATAATTTGCATTATAACTT
TAATTCAAAGTATCTCTATTTCGAATTCTTAAGGAATTTGAAACAAAAGT
CTCTGAAAGATATGACTAGCCAAGGTCTGACACTCTATCTTAAGGATAGT
TGATTGCATGCAATGTGAACTAGGACGATCAGTGGCCCTGGGTAAGCAGT
AGACAGAAAGTAAAGGCACCACGGAAAAGTAAAAGAACGATTTGAAAATA
AAATCTCTTGTTTTTTTAATATCACTATTCGCCCCCAATACCCAATAGGG
AGATGAGTAAAGTTTCAATGATGTATCTTTCGGATTGGGATCAAATGTGA
TGAATTTTTTGTACCCTGAATAACTTTGACTTTATTACGAGTAGAGTGAG
AGCCAGCAATACAGATCTAATTATTTCCAACAATATGATATAGAGATATA
CTAAGTATTTGTGTAGTGAGAAGTAAGGCATTTGCAAAAATACGTATTTG
GGCACTCCTATCTCAGTTAACCGGCGAGAAGGGGGCGATTGGTAAATGTC
GATGGATGGATTTCCTACAACAGTCTGTGACAGGACAAATCAACAAATTT
TGGCAACTTTAGATGTTGGTGTGATTTTTATGGTTAGCAAGTGTAGCTTG
TTTATATCTACCACCTTATACCGAAAATTAGTACATTCAATGAAAGAGAT
GGCCCTAAGTAAACAAAAAAATGTGACGATATAAACTATTACACAAATCA
TAAAAAAGAAAATTCTTTAAAGGTTACCAGTAATTCTACCATGGAGGTGT
CCAAAGGAGAATATACAGTGTAAGAACCCAGAAAATCTTTGATAAACCTT
TGGTCTTTTTTTTTGGAACTTTGAGCCTTAAATTCTTTTTATCCTTTTTC
TCTTAGGCAAAAGTGAAGTTGTCTTAGGTTTTACATCTAATTTTTTCTAA
TTTCACTTCATAGACATTCAATATGCTCAGCGTTCCTTTTACATATCTCC
ACTTTTTGGTATTTTGAGCCTACACGTTTTTTTTTTTTAAAAGAACGTCA
AAAATTTTCGAAGCCTTCGGATGTTCTTAGTTTTTTGGATTTGAAGCCTA
AAAATGTTCTTAAAATGTTCTTATTTTCAGCATTTTTTGAGCATTTTGAT
GTAATTTCTTAAGAAAATGCACGTTTTTAAGTCTCCAAAGCCTTAGAATA
TTCTTAGAATGTTCTTAAATTTTTGGGCCTCGAAGCCTTATGTTCTTATA
TAGTTTGTTCTTATAAAAAAAAAACGTGTAACTTTTCTCAGTCTTATAAA
AAAGGAGTGTAGAGTGAAATATGTAGAAGGGACGGTAGGTGGCAATCTTT
ATCAGGCAAGGTCAGTCATCTGCACAATACCCCAGCTGGCACTTGACGTC
ATATCAACGTCCATTAGACATGCATAATGTCCAAGTAACGTTATTTGAAC
GTTAAAACAACGTCGTTTGCTTGCTGCACAATAATCATAGTTTTAGTAGT
TGATCGTGGTGGCAATGTTTTTATTTGGTTTAAAAAAAATGTTGATGATT
ATACATACTGGGTTCAGAAAAGGAACAAACAAAAAATTAGGAGTATGCGT
TTTGACGTCATTCTAAGGTTTGTTAGCATTTCTGGTGATGTTATTCTTAT
ATCGAAGGCCTCAGTTCAATGGAAAAGTATCTTTATAAGCCACGTCGCAA
AAAAAGCATCGAAAAAAAGTCACTGTTGTTTATCAAAAGTATTAAATCAA
AATATAAACAGGATCTACATTGGATTCCCTATGATTTTCTCTTGCAACTG
GTTGGTCACCATATTGTCATTTTTGTATGCCTTTAGTTTGTTTTTCTTTT
GTTATGTTTTTTTGTGTATACGTGTTTTCATGGAAATTAAGCTTTATGTA
AACCTTTTGGTTTGAACGAGGGGTAATCTTGCTATAAAAAGAGATTGTCC
GTATATCATTCTAGAATCAGGCTTCGTGCAATATAGAGAATCTAACTCAA
TACTGATTTATTGGTTAATTTGAAAGCTTTGGTAGATCTCTCAGTGATTT
TTGAGAATCTGAAATTTTGTGCAGCATGAAGTACGATGAATCAAATCTTC
TTTCTTTGTCTTCCAACACAATGGAACTTATTCATGCGTTGAGTGATTGT
TTCTTTGGGCCAATGACTGCTAATTGTCAATTGAAGAAAGGTAGATTGGT
TGACAAAAGATTTTTTTTTTTTTTGGAATTGGTTCTTAAGTTTTGTTTTA
TTTGCGTTTTGTTTACAATCGTTTTGAGCTTCGAAAACTACCATTAGAAA
ATCAAGGACATACTGCCCAGAAACGCCCTATCTTTAACAGACTTTGATTA
AAAGACACAATGTGCGTAACCAAGTAAAACTCAAACATCCCTTTTTGCAT
CGTTTCTTTTGTAGCGATGGTTTTTCCGAGTGTAATATATCCACCTTACT
ATAAAACGGCAAATATTGGCCATCCATGGATTTAATATAGATGGCTTCTC
TATATTAAATCCATGGGTTATCTAATAGCTTTAGAAGTAATAGACTTTAT
TCATGTCTATTTATGTAATTCAACTTTGATTGATTCAGTGTTTAGCTTGC
CAAGGGAAATCGAAACTTACTTAGTAAACCAAGAGTGTTATTGATTTTAA
CCAAGAATTAGAATAACAGGAAACGAGAAATTTTGACGTTCCAAAAAAAA
AGGAACAACACAAATACTAGGTTACTTGCTGTCTTATAATTTTCAACAAA
TTACGAATTTTAAAAATTGTTTATGTTTTTTTCAAGTTTAGTCAAACTTT
AATTATAACTGATTTCAAAGGGTTCATATGAACATATCATAAATCGACAG
GCATATAATCATAACGAGCGCAAGTCTGATTTGCAATTGATTTGCAATGC
AATCTTTTTCACCATTTAGGCGAAAATTATTACGTCATCATTCCTTTTAA
GATAAAAATCATGGGCTCAAAATCAGACTTACGCATATAAATCAACCTTG
TGAAAATTTCCCTGTACATTCCCAACATTATTATAAAGAATTAGATCTAA
AAGTCAAGTTGCCATGAGTAGTGTTTCTTTCGTAGTAGAAAGACTTTATA
GCAGCCCTCCATTACAAGGTTGAAAGTCGATGAAAATGGATACACTAGAG
TGCCCTTCAACATTGTCAAGTTTTGTAAAGAGAAATCTTACGACCCTCGA
CTTGTTTTACATCTAACGTTCTTGTATTCTTCTGTTTAAATTAAAAAGCC
CTTTTTGTTATAAAACACAAAAATAGCATCACAGTCTTCTAAACCCCCCC
CCCCCCAAGGAGCAGTGCATAAACAAAGCTTACGGACAGTTCTTGCGAAA
TTGGCCTAAAAAGTGAAATCAAATTCCTACAAAATTTTTATGAATGAATA
AACAAAGAGTATAGTTTTCTGACAAGTAGAAAATTCGTAAAAGTTAAATT
CTACAAAAAAATGTTTGCGCAAAAATTTGTTTCCATAAGGTTTGTAAATG
GTAGGTGGTGCGAACATGACCTAGAGTGAATGCTGAGTAAAATTGAAAGC
ATTCCTCTTCGGATAAAATGGGAGTAATCCTGCTAATACTATAGTGATGA
ACAATACCCGCTTTATCAATGTAACTATTTTTAGTGAAAACGCATAATAG
GTCGCGATGCGATAATATAAACAAAAGCTGGCGTTGGATAAACAAGAATT
TCTATTCTTCTCAAATACGCCATGACATTGATGCTTTGAAGGATTTGTTG
TTTTTTGTGGTTTGGGAAGGGTACCACTTGTATATAAAAGCTAGAAACAT
GTACCTACTTCATATCACACTTCTACTTCAAAACACAACAAAATTTGTGA
GGTACTTTTGACTCTCTCACACTTATAACAAATACGATTTTCTAAATTGG
TACTCTTTGATACTCACAGGTGACCCATCGATCAATACAACAATTTTACC
GACAGTTCAGCCGAAAACCGAGTACGACCCGACATCACACGACATGCATG
CGACAAACGAACAACTTGTACAACAAATGCACCATCAAACGACGACAAAA
CCAATTCGAAAGAAACCAAGGATTTTATTTTCACAATCTCAAGTTATGGA
GTTAGAGAAGAAATTTAAAGAACAAAAATATCTATCAGCTTCCGAACGTG
ACCAAATGGCATCAAAATTAAATCTAACACCAACACAGGTAAACTATAAA
TGACTTGCTCTTCTTTCCAATGTGCATGTACATATATACGTATATCATTA
GCCTTTGCTCATACTCGAGCCAAACCAACAAATTTAAAGGTCGTGCAAGT
TGATCTCGGTAGGAGATTGGTCTTAGCTATATCTCATGCGACTATATTGT
TAAGGACTTCTATCTGGTTATTCAGTTAATTGATTCAAACCTATAGTTGC
CAAACTTCCAGAATAAATTGAAATGTAACCAAACAAATAGTTCAAAATCC
TCAATACAATTCGTAATTTATTGTGTGATCGAAAGATTCCCGAAAAATCT
TACAGAAATTTAGATCATTCATTCATTGTGTATTCATTTTTTCTTTCCAG
GTCAAAATTTGGTTCCAAAACAAAAGGTACAAGTGCAAGAAACAATCACA
AGAATCCAGGCGTGGAATCCACCCACCTCCCTACGAATGGCCTTCACTCT
TCAACCACCAACGTAATGTTCCTGTCTTAGTACAACCACCATCATGCCCG
CCCCATTGCTATCGCCCTTCGCCACCATCGGTTAATTTAAACTCGCCTAT
CCCGAGTGAAAGCTATACCGGTTATTTTCCGGAAAGCTACACTGCTCCAC
ATTACAATAACAATGTTTATTCAACTTCACCTTATAACCAATGGCCGTGC
TACAAGTGATACCATATTGAATTAAAAATTACGGTGCTCAGTGGGATCTA
ATTGGTTGGATCAAGGAGTAAATGATGCTTTTTCTTCGTACGATGGTCTA
AAAGTTCTAACGGGAAAAATGAAGCTAGGTACATGTCAAGATGGACGGAA
ATGATGACCTAAACTGAAAATTGAACCTTTTTCTAGAAGCAAGAAAGACT
TATTTATTTTTTTACTAAAAGCGACCTGGCTGTCGCTCTTGCTTTCGAAA
TAAGAGAAGAACAAAATTCTTTATTTTGAAAAAACGGAGGAATGAAACAC
GCTGTAAATATTTTTTCATATACATTGTACATATTTTTTGTTTTTTTGTT
GTTGTTTTTAAGATAGAAAAGATAGGGTTTTAGGGAAATTATAATTGCTG
TAAAATAGTGTGCGGACGAATTTCTCAGAGGAAAATATTGTGATGGAGAC
CAAAGATTGACAATTTTTCCGTGGTCACACAGTAAAAAAGGCTTCTACAG
CCTGGTTTCCATACAAAGGTTTATTACTTTTGGGTACTTTTAAAGGTCAT
GATTAAAACAAGGATGCTTTTGTTGGGATCTATTGTCAATGATCAAGTTT
TGACAAGCTTTAGCCTGCTCCTGCAGCCAGTAGAAAAAATACTTTCACAA
TCGTCTTTTATGCTGTTTTTGGCTATAAAAACAATTTATGGGTCTTTTGA
TACTAAACATATCTCTGAGAATAAACCTCTTGAAATATCATTTTTGGTGA
GGACGCATTTTTAACTTATTTTGTTTTATCGCAATATATATTTTGAAAGA
GATATTTTTTAAAAGAAATCTTTTTTTTTGTACAGAGTTACTGTTTATTA
GGAATATTTTGTTGGAATTGATATTAAAAA Coding sequence (CDS) from alignment at sc0000231:36432..51211- >TCONS_00016211 ID=TCONS_00016211|Name=TCONS_00016211|organism=Clytia hemisphaerica|type=CDS|length=3105bp|location=Sequence derived from alignment at sc0000231:36432..51211- (Clytia hemisphaerica)
GTCAAAATTTGGTTCCAAAACAAAAGGTACAAGTGCAAGAAACAATCACA
AGAATCCAGGCGTGGAATCCACCCACCTCCCTACGAATGGCCTTCACTCT
TCAACCACCAACGTAATGTTCCTGTCTTAGTACAACCACCATCATGCCCG
CCCCATTGCTATCGCCCTTCGCCACCATCGGTTAATTTAAACTCGCCTAT
CCCGAGTGAAAGCTATACCGGTTATTTTCCGGAAAGCTACACTGCTCCAC
ATTACAATAACAATGTTTATTCAACTTCACCTTATAACCAATGGCCGTGC
TACAAGTGAGTGACCCATCGATCAATACAACAATTTTACCGACAGTTCAG
CCGAAAACCGAGTACGACCCGACATCACACGACATGCATGCGACAAACGA
ACAACTTGTACAACAAATGCACCATCAAACGACGACAAAACCAATTCGAA
AGAAACCAAGGATTTTATTTTCACAATCTCAAGTTATGGAGTTAGAGAAG
AAATTTAAAGAACAAAAATATCTATCAGCTTCCGAACGTGACCAAATGGC
ATCAAAATTAAATCTAACACCAACACAGATGGACCAATCGAGAAGTTCTT
TTGACAATATGGCACCAGCAGTAACAACATCATTTCTGGTAGATAGTATT
TTAAATCAACGACAACAAAGTGTAGATGTCTTCGAAAATAGACTTTCATC
TCCTCCCATGGATCCGCACTATAGTGGCCCCCCGCCACCACATGGTTACC
TAGGTTACCAACCATGCGCACCACCTTATCTTTACGGTGGTGAGCGTCGA
ATTCCGAAGTGGGAACGTCATGATCCGGACGACGCATCAAATAATGGAGG
AACGTCGCCGATAAGTCCTAGATCACGACTACCTGGTGATTATATGGCTT
CGCGAAGGGCTGAAGAACTTATGGCGTTTGGTAATATGAAGAATGAACCC
GGACGGTTAGAAGTAGACCCAGGGTTAAGCTGTATGGTTGCAGAGGCAGA
GAGAAAAGCTGGACATAATCATTATGATACAAACAGTCAAAATTTGGTTC
CAAAACAAAAGGTACAAGTGCAAGAAACAATCACAAGAATCCAGGCGTGG
AATCCACCCACCTCCCTACGAATGGCCTTCACTCTTCAACCACCAACGTA
ATGTTCCTGTCTTAGTACAACCACCATCATGCCCGCCCCATTGCTATCGC
CCTTCGCCACCATCGGTTAATTTAAACTCGCCTATCCCGAGTGAAAGCTA
TACCGGTTATTTTCCGGAAAGCTACACTGCTCCACATTACAATAACAATG
TTTATTCAACTTCACCTTATAACCAATGGCCGTGCTACAAGTGAGTGACC
CATCGATCAATACAACAATTTTACCGACAGTTCAGCCGAAAACCGAGTAC
GACCCGACATCACACGACATGCATGCGACAAACGAACAACTTGTACAACA
AATGCACCATCAAACGACGACAAAACCAATTCGAAAGAAACCAAGGATTT
TATTTTCACAATCTCAAGTTATGGAGTTAGAGAAGAAATTTAAAGAACAA
AAATATCTATCAGCTTCCGAACGTGACCAAATGGCATCAAAATTAAATCT
AACACCAACACAGATGGACCAATCGAGAAGTTCTTTTGACAATATGGCAC
CAGCAGTAACAACATCATTTCTGGTAGATAGTATTTTAAATCAACGACAA
CAAAGTGTAGATGTCTTCGAAAATAGACTTTCATCTCCTCCCATGGATCC
GCACTATAGTGGCCCCCCGCCACCACATGGTTACCTAGGTTACCAACCAT
GCGCACCACCTTATCTTTACGGTGGTGAGCGTCGAATTCCGAAGTGGGAA
CGTCATGATCCGGACGACGCATCAAATAATGGAGGAACGTCGCCGATAAG
TCCTAGATCACGACTACCTGGTGATTATATGGCTTCGCGAAGGGCTGAAG
AACTTATGGCGTTTGGTAATATGAAGAATGAACCCGGACGGTTAGAAGTA
GACCCAGGGTTAAGCTGTATGGTTGCAGAGGCAGAGAGAAAAGCTGGACA
TAATCATTATGATACAAACAGTCAAAATTTGGTTCCAAAACAAAAGGTAC
AAGTGCAAGAAACAATCACAAGAATCCAGGCGTGGAATCCACCCACCTCC
CTACGAATGGCCTTCACTCTTCAACCACCAACGTAATGTTCCTGTCTTAG
TACAACCACCATCATGCCCGCCCCATTGCTATCGCCCTTCGCCACCATCG
GTTAATTTAAACTCGCCTATCCCGAGTGAAAGCTATACCGGTTATTTTCC
GGAAAGCTACACTGCTCCACATTACAATAACAATGTTTATTCAACTTCAC
CTTATAACCAATGGCCGTGCTACAAGTGAGTGACCCATCGATCAATACAA
CAATTTTACCGACAGTTCAGCCGAAAACCGAGTACGACCCGACATCACAC
GACATGCATGCGACAAACGAACAACTTGTACAACAAATGCACCATCAAAC
GACGACAAAACCAATTCGAAAGAAACCAAGGATTTTATTTTCACAATCTC
AAGTTATGGAGTTAGAGAAGAAATTTAAAGAACAAAAATATCTATCAGCT
TCCGAACGTGACCAAATGGCATCAAAATTAAATCTAACACCAACACAGAT
GGACCAATCGAGAAGTTCTTTTGACAATATGGCACCAGCAGTAACAACAT
CATTTCTGGTAGATAGTATTTTAAATCAACGACAACAAAGTGTAGATGTC
TTCGAAAATAGACTTTCATCTCCTCCCATGGATCCGCACTATAGTGGCCC
CCCGCCACCACATGGTTACCTAGGTTACCAACCATGCGCACCACCTTATC
TTTACGGTGGTGAGCGTCGAATTCCGAAGTGGGAACGTCATGATCCGGAC
GACGCATCAAATAATGGAGGAACGTCGCCGATAAGTCCTAGATCACGACT
ACCTGGTGATTATATGGCTTCGCGAAGGGCTGAAGAACTTATGGCGTTTG
GTAATATGAAGAATGAACCCGGACGGTTAGAAGTAGACCCAGGGTTAAGC
TGTATGGTTGCAGAGGCAGAGAGAAAAGCTGGACATAATCATTATGATAC
AAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00016211-exon-sc0000231-1575043694:50635..51211 | TCONS_00016211-exon-sc0000231-1575043694:50635..51211 | Clytia hemisphaerica | exon |
| TCONS_00016211-exon-sc0000231-1575043694:37974..38242 | TCONS_00016211-exon-sc0000231-1575043694:37974..38242 | Clytia hemisphaerica | exon |
| TCONS_00016211-exon-sc0000231-1575043694:36432..37611 | TCONS_00016211-exon-sc0000231-1575043694:36432..37611 | Clytia hemisphaerica | exon |
| TCONS_00016211-exon-sc0000231-1510915933:50635..51211 | TCONS_00016211-exon-sc0000231-1510915933:50635..51211 | Clytia hemisphaerica | exon |
| TCONS_00016211-exon-sc0000231-1510915933:37974..38242 | TCONS_00016211-exon-sc0000231-1510915933:37974..38242 | Clytia hemisphaerica | exon |
| TCONS_00016211-exon-sc0000231-1510915933:36432..37611 | TCONS_00016211-exon-sc0000231-1510915933:36432..37611 | Clytia hemisphaerica | exon |
| TCONS_00016211-exon-sc0000231-1491911889:50635..51211 | TCONS_00016211-exon-sc0000231-1491911889:50635..51211 | Clytia hemisphaerica | exon |
| TCONS_00016211-exon-sc0000231-1491911889:37974..38242 | TCONS_00016211-exon-sc0000231-1491911889:37974..38242 | Clytia hemisphaerica | exon |
| TCONS_00016211-exon-sc0000231-1491911889:36432..37611 | TCONS_00016211-exon-sc0000231-1491911889:36432..37611 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000231 | supercontig | sc0000231:36432..51211 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
| GO:0043565 | sequence-specific DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
Blast
BLAST of TCONS_00016211 vs. Swiss-Prot (Human)
Match: NKX26 (Homeobox protein Nkx-2.6 OS=Homo sapiens GN=NKX2-6 PE=1 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.022e-24 Identity = 64/147 (43.54%), Postives = 85/147 (57.82%), Query Frame = 1
Query: 715 RKKPRILFSQSQVMELEKKFKEQKYLSASERDQMASKLNLTPTQVKIWFQNKRYKCKKQSQESRRGI--HPPPYEWPSLFNHQRNVPVLVQ--PPSCPPHCYRPSPPSVNLNSPIPSESYTGYFPESYTAPHYNNNVYSTSPYNQWP 1143
R+KPR+LFSQ+QV+ LE++FK+Q+YLSA ER+ +AS L LT TQVKIWFQN+RYKCK+Q Q+ + HP L + VPVLV+ P P P+ PS + P Y GY Y A + Y+ +P P
Sbjct: 132 RRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRYKCKRQRQDKSLELAGHP-------LTPRRVAVPVLVRDGKPCLGPGPGAPAFPSPYSAAVSPYSCYGGYSGAPYGAGY--GTCYAGAPSGPAP 269
The following BLAST results are available for this feature:
|
