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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00016381 ID=TCONS_00016381|Name=TCONS_00016381|organism=Clytia hemisphaerica|type=transcript|length=3792bpRun BLAST on NCBI protein sequence of TCONS_00016381-protein >TCONS_00016381-protein ID=TCONS_00016381-protein|Name=TCONS_00016381-protein|organism=Clytia hemisphaerica|type=polypeptide|length=691bp MDWWQSLFSRARCAKAPLYDYAVKRANPQDLRVIFYKYASVEKNGERYLRRun BLAST on NCBI transcript from alignment at sc0000233:367608..388287- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00016381 ID=TCONS_00016381|Name=TCONS_00016381|organism=Clytia hemisphaerica|type=transcript|length=20680bp|location=Sequence derived from alignment at sc0000233:367608..388287- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000233:367608..388287- >TCONS_00016381 ID=TCONS_00016381|Name=TCONS_00016381|organism=Clytia hemisphaerica|type=CDS|length=39444bp|location=Sequence derived from alignment at sc0000233:367608..388287- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00016381 vs. Swiss-Prot (Human)
Match: CMC1 (Calcium-binding mitochondrial carrier protein Aralar1 OS=Homo sapiens GN=SLC25A12 PE=1 SV=2) HSP 1 Score: 615.535 bits (1586), Expect = 0.000e+0 Identity = 342/672 (50.89%), Postives = 466/672 (69.35%), Query Frame = 1
Query: 259 KRANPQDLRVIFYKYASVEKNGERYLRPTDLIRDLLNM-DAATHNADTLSLLSGVVDQTKDGLISFEEFQAFEALLCNVDAKYRLCFQMFDLDGKGTITFDEFKKMLSCQTTYAKYPFNFDCDFVRFYFGKDLKYKVNYQEFTHLLQHLNKEYIKQLFRQK-AGKNQLISTLQFAEIMKVGCPHKLTPYIVDNMMAAVTAQSGSRTVSYIYCMAFYDMLQNLSVIQLLFKDAADNNKFTGLTREELLQASVRYPAVSPLQLEILFDICTVANTGKGKISTIDLQPLQPQRDPMTVFSKIHEFKHYERMPGETGTEKVEQQWYMKVAQSGYKFFLGSLAGATGAAFVYPIDLVKTRMQNQRSV--LPGERLYQNSFDCFRKVIKNEGPTGLYRGLVPQLIGVSPEKAIKLTTNDLVRYKFTDKDGEIRLXXXXXXXXXXXXXQVMFTNPIEIVKIRMQVAGE--SGTQTSALKLVKELGFSGLYKGARACFLRDIPFSSIYFPCYAHFKSGLADKNGYNSPISXXXXXXXXXXXXXXXVTPADVIKTRLQVKARRGQQTYRGVIDCARKILQEEGATAFFKGGPARVFRSSPQFGVTLMTYELLQRVLYVDFGG-GYTRTELTPRNPEVSL---HPDHIGGLRLAVASFSGIETKFGLMLPKFSPPPPSSENP 2244
KR +P +LR IF +YAS E +GERY+ P D ++ L + + N + LL+GV DQTKDGLIS++EF AFE++LC D+ + + FQ+FD G G +TF+ K++ + PFN+DC+F+R +FG + K +NY EFT LQ L E+ +Q F K K+ +IS L F++IM H LTP++ +N+++A S S VS+ Y AF +L N+ +++ ++ A K +T+EE Q+++RY V+PL+++IL+ + + N G+++ D++ + P + ++ + E + ++ PG + + ++++A+S Y+F LGS+AGA GA VYPIDLVKTRMQNQR + GE +Y+NSFDCF+KV++ EG GLYRGL+PQLIGV+PEKAIKLT ND VR KFT +DG + L E++AGGC GG+QV+FTNP+EIVKIR+QVAGE +G + SAL ++++LG GLYKGA+ACFLRDIPFS+IYFP YAH K LAD+NG+ ++LL A A AGVPAA LVTPADVIKTRLQV AR GQ TY GVIDC RKIL+EEG +AF+KG ARVFRSSPQFGVTL+TYELLQR Y+DFGG +E TP++ L +PDHIGG RLA A+F+GIE KFGL LPKF P + P
Sbjct: 9 KRGDPHELRNIFLQYASTEVDGERYMTPEDFVQRYLGLYNDPNSNPKIVQLLAGVADQTKDGLISYQEFLAFESVLCAPDSMFIVAFQLFDKSGNGEVTFENVKEIFGQTIIHHHIPFNWDCEFIRLHFGHNRKKHLNYTEFTQFLQELQLEHARQAFALKDKSKSGMISGLDFSDIMVTIRSHMLTPFVEENLVSAAGG-SISHQVSFSYFNAFNSLLNNMELVRKIYSTLAGTRKDVEVTKEEFAQSAIRYGQVTPLEIDILYQLADLYNA-SGRLTLADIERIAPLAEGALPYN-LAELQR-QQSPG------LGRPIWLQIAESAYRFTLGSVAGAVGATAVYPIDLVKTRMQNQRGSGSVVGELMYKNSFDCFKKVLRYEGFFGLYRGLIPQLIGVAPEKAIKLTVNDFVRDKFTRRDGSVPLPAEVLAGGCAGGSQVIFTNPLEIVKIRLQVAGEITTGPRVSALNVLRDLGIFGLYKGAKACFLRDIPFSAIYFPVYAHCKLLLADENGHVGGLNLLAAGAMAGVPAASLVTPADVIKTRLQVAARAGQTTYSGVIDCFRKILREEGPSAFWKGTAARVFRSSPQFGVTLVTYELLQRWFYIDFGGLKPAGSEPTPKSRIADLPPANPDHIGGYRLATATFAGIENKFGLYLPKFKSPSVAVVQP 670 The following BLAST results are available for this feature:
BLAST of TCONS_00016381 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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