TCONS_00016720 (transcript) - C. hemisphaerica

Overview
NameTCONS_00016720
Unique NameTCONS_00016720
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1369

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00016720 ID=TCONS_00016720|Name=TCONS_00016720|organism=Clytia hemisphaerica|type=transcript|length=1369bp
AGATTGACTTTTTTCgttattctttttcttttagtattaagaaaaaatca
aaaaaattgttatGTGATATTTATTGTCACCataacaaaaattgaaatta
gatGATGGCTGACAATGTGGAAGGAGGAGCTCAAGGAAACGATAAAGATG
CTGAAAACATTCCAGTAAAATGTGTAATGTTTGGTGGCGAAGGAGCTGCT
GGTAAAACTTCGatgtttatttattattttcataataaAATAAAGCCTGA
GTATGTACCTCCGAAAGTTGAAACAGATAATGGAATAAAAATGTACACAT
ATAAAGAAACTGGAGAAAAAGTACGAATTTATTACGATGACCATGAAGGT
GGCGGCGAGGACTGGGATTCATTGCGTCATCTTGGTTATGAAAGAGCTCA
TGTTGTAgtcctttgtttttcaatttacaCTACAGATAATCTAGAAAGAA
TAGAAGATTATTGGTACCCTTTTGTTAAGAAATATGCCCCCAAAGCTAAG
ATATTGCTGTGTGCAACTCAAATCGATTTAAGAACGAATCAAGAAGAAAT
AGATGCTTTAGCAAGACACAATGAAAGACTGGTTACCACTATAGAGGGAA
AACAAATGGCAGAGAAAATTAAAGCTGTTGGATATTTTGAATGCTCAACA
CATGAAGGGAAAGGAGTGAACGAGGTTTTTGAAGCAGCCGCAGAAGCAAC
GATGCATGGGAAATCCAAGGACGATAAATATTTTGAACGTAAAGACAATA
AAATGTGTTCGATGATGTAAATTCTGTGAAAGTTTATTGACCTGAACTTT
TTGGtgctttttgttttaaaggtGTGTTATTTTATGAATATACAGGCATG
GTTGTCTTAGTTATTGTTTGTTTGAGTGTTTCAATTTTAGTACAATGTAC
TATCTGGAACATCTTGTTATAGTACCACGAGTTTAGAAATTACACCACCA
ATTGGCGATAAGTGCACTGGTCATCCAATATAAGTACGCATTCTCGAACA
TTTGGGGTCATATAAAATGATATTGGACGGGGTGGTTTTTCCAAACTAGT
ATctgaaaaattaacattttcaacaatttcaatgcttttcaaaattttat
tgatttttcttcttgcaGAAAACTGGAGTCTGTCCGGAATATAGACTCTC
GTCCAcccgaaaaaaaaatattaagtaaaAGTGTCCTTTTACCAGTGTTA
AGGGTCAAATTATTTATTAAAGAGATCTAACTGTTTTTCCCAATAAACTG
AGCCTTGTCttataaaatctttctttataTAGGCTTGTATGTAAGTGCTT
TATCTTAAatgattttcataaattatttacCTTTTTGTAGATCTTTCTTG
TACCTTTAACTTATTTTTG
Run BLAST on NCBI

transcript from alignment at sc0000248:175162..176530+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00016720 ID=TCONS_00016720|Name=TCONS_00016720|organism=Clytia hemisphaerica|type=transcript|length=1369bp|location=Sequence derived from alignment at sc0000248:175162..176530+ (Clytia hemisphaerica)
AGATTGACTTTTTTCgttattctttttcttttagtattaagaaaaaatca
aaaaaattgttatGTGATATTTATTGTCACCataacaaaaattgaaatta
gatGATGGCTGACAATGTGGAAGGAGGAGCTCAAGGAAACGATAAAGATG
CTGAAAACATTCCAGTAAAATGTGTAATGTTTGGTGGCGAAGGAGCTGCT
GGTAAAACTTCGatgtttatttattattttcataataaAATAAAGCCTGA
GTATGTACCTCCGAAAGTTGAAACAGATAATGGAATAAAAATGTACACAT
ATAAAGAAACTGGAGAAAAAGTACGAATTTATTACGATGACCATGAAGGT
GGCGGCGAGGACTGGGATTCATTGCGTCATCTTGGTTATGAAAGAGCTCA
TGTTGTAgtcctttgtttttcaatttacaCTACAGATAATCTAGAAAGAA
TAGAAGATTATTGGTACCCTTTTGTTAAGAAATATGCCCCCAAAGCTAAG
ATATTGCTGTGTGCAACTCAAATCGATTTAAGAACGAATCAAGAAGAAAT
AGATGCTTTAGCAAGACACAATGAAAGACTGGTTACCACTATAGAGGGAA
AACAAATGGCAGAGAAAATTAAAGCTGTTGGATATTTTGAATGCTCAACA
CATGAAGGGAAAGGAGTGAACGAGGTTTTTGAAGCAGCCGCAGAAGCAAC
GATGCATGGGAAATCCAAGGACGATAAATATTTTGAACGTAAAGACAATA
AAATGTGTTCGATGATGTAAATTCTGTGAAAGTTTATTGACCTGAACTTT
TTGGtgctttttgttttaaaggtGTGTTATTTTATGAATATACAGGCATG
GTTGTCTTAGTTATTGTTTGTTTGAGTGTTTCAATTTTAGTACAATGTAC
TATCTGGAACATCTTGTTATAGTACCACGAGTTTAGAAATTACACCACCA
ATTGGCGATAAGTGCACTGGTCATCCAATATAAGTACGCATTCTCGAACA
TTTGGGGTCATATAAAATGATATTGGACGGGGTGGTTTTTCCAAACTAGT
ATctgaaaaattaacattttcaacaatttcaatgcttttcaaaattttat
tgatttttcttcttgcaGAAAACTGGAGTCTGTCCGGAATATAGACTCTC
GTCCAcccgaaaaaaaaatattaagtaaaAGTGTCCTTTTACCAGTGTTA
AGGGTCAAATTATTTATTAAAGAGATCTAACTGTTTTTCCCAATAAACTG
AGCCTTGTCttataaaatctttctttataTAGGCTTGTATGTAAGTGCTT
TATCTTAAatgattttcataaattatttacCTTTTTGTAGATCTTTCTTG
TACCTTTAACTTATTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009349XLOC_009349Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00016720-exon-sc0000248-1491911889:175162..176530TCONS_00016720-exon-sc0000248-1491911889:175162..176530Clytia hemisphaericaexon
TCONS_00016720-exon-sc0000248-1510915933:175162..176530TCONS_00016720-exon-sc0000248-1510915933:175162..176530Clytia hemisphaericaexon
TCONS_00016720-exon-sc0000248-1575043694:175162..176530TCONS_00016720-exon-sc0000248-1575043694:175162..176530Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000248supercontigsc0000248:175162..176530 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.09555	9.18259	12.4639	16.8952	7.58158	5.01734	7.58783	9.01922	6.37045	6.57569	4.70291	4.32812	3.30773	2.19847	1.65682	1.37393	2.78775	2.55121	2.39675	1.91791	3.14167	3.65899	5.24633	4.35492	4.48547	5.40111	8.91104	6.30772	6.18264	5.62422
Blast
[Close]
BLAST of TCONS_00016720 vs. Swiss-Prot (Human)
Match: CDC42 (Cell division control protein 42 homolog OS=Homo sapiens GN=CDC42 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 2.990e-30
Identity = 69/201 (34.33%), Postives = 104/201 (51.74%), Query Frame = 3 
Query:  165 VKCVMFGGEGAAGKTSMFIYYFHNKIKPEYVPPKVETDNGIKMYTYKETGEKVRIYYDDHEGGGEDWDSLRHLGYERAHVVVLCFSIYTTDNLERIEDYWYPFVKKYAPKAKILLCATQIDLRTNQEEIDALARHNERLVTTIEGKQMAEKIKAVGYFECSTHEGKGVNEVFEAAAEATMHGKSKDDKYFERKDNKMCSMM 767
            +KCV+ G +GA GKT + I Y  NK   EYVP     DN     T    GE   +   D   G ED+D LR L Y +  V ++CFS+ +  + E +++ W P +  + PK   LL  TQIDLR +   I+ LA++ ++ +T    +++A  +KAV Y ECS    KG+  VF+ A  A +          E K ++ C ++
Sbjct:    4 IKCVVVG-DGAVGKTCLLISYTTNKFPSEYVP--TVFDN--YAVTVMIGGEPYTLGLFDT-AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP-------EPKKSRRCVLL 191
The following BLAST results are available for this feature:
BLAST of TCONS_00016720 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CDC422.990e-3034.33Cell division control protein 42 homolog OS=Homo s... [more]
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