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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017325 ID=TCONS_00017325|Name=TCONS_00017325|organism=Clytia hemisphaerica|type=transcript|length=3125bp
ttttaagaGAGAGAGAGACAACCTTTTAACTAAACAGAACTTTTAAGAAG
CTAATTCTTTTTctagaaataaattaaaatacgaaaaagtgaaagaaata
gCGTACGGTGCCAGCAGAAAATGCATACTCTTGAGACTTTGTTCTCAGTA
TTATGTTTATTGACTGCTGTTGCTTATGTCCAGGGCCATGGGAACTCAAA
TCTTTATGAACTTTTGACAGATGATAAAACGACTTTTTTATCCAAGGATT
TCAAACATCGCGTGAGACGTACAACTATTGTTGAAAAAGGAGGAGAAAAA
ATCAACACAACATTCGCTGAATCGGAGGAAAACGATCAAAATACAAACAC
TACCATCAATACAATCGATGATCACCGATATTATACATCGAAATTCACCA
CTCGTGGTCAATCGTATTTTATCGATTTAACAAATGGAACTGAATCATTA
CCATACGAGGGcttggaaattgaaaaacatgAGATATTATCAAAAGCTTA
TCTCAAAGCTGCTTTTGTAGCTCTTAAATTCCCATTCTATTTTTACGGCA
ACAAAGTTCAGCGCGTTGTAGTGACCACTGGTGGATTCCTCAGTGTTGGT
CCGTTGTTTCACGCTTACGCCCATGTTGTGCATTATATTGCACCGTTAAT
GGCTAATTTCAATCCATCAATCGATAATTCGACTGAGATTCTGGTCGGAT
CTGGTAAAGATATTTTCATAGTACAATGGAAAAATATGCAGATGAATAAT
ACAGTTGATGGCAGTCCGAAATATGACTTCCAAACAATTTTACATGAAAA
TGGTACCATTGTTTTTGCTTATAAGGATGTACCAGTGTCTCCAGTAAAGC
TACCTAATGATACCCATAATGTCACCATCGGGATCGCTGACGGACTTGTG
CTATCCTTTGTATATGATAAAGGTGGTAAAATACACTTCCATAATTACAT
TTATTCATATCATCGCATTTCTTTACCCTTACGAAATCCAATCTCTGGTT
CGGCGTTTATTTTGGATCTTGAACCAACGTGTATTCGACAGACCACATGT
GGTGCTTGCCTTAATAAAAACAATACGAGGTTTAATTGTAAATGGTGTCC
CTCGTTGCAGCGTTGTTCGAATGGTTTGGATTGGCATCGGCAATCTTGGA
TGTCAAGATGTGCTAAAACAGCTTACGATGACCCTGAGAAATGCTCAGCT
CAAATACCAGGCAAAGACACTAATACAATGACTAAGAAAAAGCAAAGCTC
AAATAACGGTGCGCTTATTGGAGGGATAGTTGGGTTCCTCGTAATAATGG
TGCTCCTCATAATACTAGTCATGTTTTATTACGCGTACACACACCCGCAG
AGTTCATCCGGGATGTGGTTGATTGAGCATAGACCGGCTGTTTTGTTCAG
TAAAGCTCGCTTCAACAAAGTCCCCGATGATCAGTTGCTGTAAGAAAGTG
GCAGGTTTTATGATCTGCTTTGTATCGAAAAGAAAACCGTTTTTCTTTCC
TGATTTTTCATGGCAAGTTAAATGAGTTCTTTGGCGACCTTGCTTTTGCT
CTGCTTTCATTCATTCAGAGTCTCGGTGTTCAGATGTTATTGACTGTATC
GCTTTATTTTGCATCATTGATGACGTCAAAGAGAGTTTAAAATTGCTGCC
ATAAGGTTGTTGATATTTATGATATTATGGATTTTGGCGACCATAGTCTT
GGTGCATGGGTCGGATACTTACGAGCTTGATGCTGaagtttgcaattttt
tttgaaacatgttttgttttttaagttcTTTGGATCTTCTCTTAAAATTT
GTCATTTGTTATCAAACTTGTTGAATCTAATTTCTAGGCTAGCGTGAAAC
TTATACTCTAGGGCCTAAAAGCCTGTAGTTGTCTATAATGTAAACTATGA
AATTTCGGGCTTAAAAGGTTAAGTCAGAAAGACTAATTTCaacttctttt
ttattatttttggtcAAGAAATGAAATAAAGTTATTTCAATAATCTTCTC
TCGTTCCAACATCCATAGCTTGAAACAACAATTTGTTAGCTGGGAAACTT
ATGAAAGTTTTCTACGTCCATTTGTTACGAATAGTATTTATTATGTTTTA
TTTCTgtatttttgtaatattttcagattatttGTCTATTTAATTAATTT
GTCTCAGTCTTTTTTACAATTATCGTTACTGTACGTTCCAAATTAATCTT
ATTATCAGTTTTAACACTTTCTGGTTAGGAATATTTTGTTCAACGTCTCT
CGCACGCACCAAGCAATTTTCTGAGGCGATCAAAATGAAGCTTGCTTTCT
TTCTTGCTCCATGAATTTAGTCGCTGAGCTTATTCTCAATCGAGcatcac
gttttttatataagaacaaactgtataaaaacataagacttcatcgatgg
tcaaaatattaagaataagttaagaaaatttttaggcttgaaactcgtAA
AGTTAAGAATTTCGGAAAGCTTCGATAGTTCTggatcttttttttataaa
aaaacgtgtcttGGGGAGACGTACCTTTTGAGATATGACGACTGGATCGT
GCGTTTCAAAAGGGTAAACGATAGCAATACAATAACGAATTTCCATAGAT
AAGgaagtttttaaaacatttaaggCGAAAAACTGGAAGACATGCTCTCA
ATTCCTCGAAATAGAATCATATACACTTGACACTCTATAATTCGGTGTTC
TACTATTCAATATGCTCCgatatttgataatattgaaagccaccgtcatg
gagaaactctcataaatgacGCTCCACTATTCGATacgattccccttgaa
aatcgaattagagagagtcaactgtattatcATATAATTCGAACAGAATA
TCCTTTGGCTGGAATATAATAATGATTGGTATAGGTAAcataactttttt
gtttattttctcttttgttaaaatgtttatttacttttctgATTTTGTAT
TCTTTTGACCTCAAACAGGTAATTAATTAACAGGCAATTGTTATCGTaga
gtaatatattttttgtttaatgtttttgTTACTTACTGTTCagtttttta
attatatttgattattttgttcattcaatttgtttttttattcaaaatat
ttataaaaagatACCCGAAGCTTTG Run BLAST on NCBI protein sequence of TCONS_00017325-protein >TCONS_00017325-protein ID=TCONS_00017325-protein|Name=TCONS_00017325-protein|organism=Clytia hemisphaerica|type=polypeptide|length=440bp
MHTLETLFSVLCLLTAVAYVQGHGNSNLYELLTDDKTTFLSKDFKHRVRR
TTIVEKGGEKINTTFAESEENDQNTNTTINTIDDHRYYTSKFTTRGQSYF
IDLTNGTESLPYEGLEIEKHEILSKAYLKAAFVALKFPFYFYGNKVQRVV
VTTGGFLSVGPLFHAYAHVVHYIAPLMANFNPSIDNSTEILVGSGKDIFI
VQWKNMQMNNTVDGSPKYDFQTILHENGTIVFAYKDVPVSPVKLPNDTHN
VTIGIADGLVLSFVYDKGGKIHFHNYIYSYHRISLPLRNPISGSAFILDL
EPTCIRQTTCGACLNKNNTRFNCKWCPSLQRCSNGLDWHRQSWMSRCAKT
AYDDPEKCSAQIPGKDTNTMTKKKQSSNNGALIGGIVGFLVIMVLLIILV
MFYYAYTHPQSSSGMWLIEHRPAVLFSKARFNKVPDDQLL Run BLAST on NCBI transcript from alignment at sc0000264:38167..41291 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017325 ID=TCONS_00017325|Name=TCONS_00017325|organism=Clytia hemisphaerica|type=transcript|length=3125bp|location=Sequence derived from alignment at sc0000264:38167..41291 (Clytia hemisphaerica)
CAAAGCTTCGGGTatctttttataaatattttgaataaaaaaacaaattg
aatgaacaaaataatcaaatataattaaaaaactGAACAGTAAGTAAcaa
aaacattaaacaaaaaatatattactctACGATAACAATTGCCTGTTAAT
TAATTACCTGTTTGAGGTCAAAAGAATACAAAATcagaaaagtaaataaa
cattttaacaaaagagaaaataaacaaaaaagttatgTTACCTATACCAA
TCATTATTATATTCCAGCCAAAGGATATTCTGTTCGAATTATATgataat
acagttgactctctctaattcgattttcaaggggaatcgtATCGAATAGT
GGAGCgtcatttatgagagtttctccatgacggtggctttcaatattatc
aaatatcGGAGCATATTGAATAGTAGAACACCGAATTATAGAGTGTCAAG
TGTATATGATTCTATTTCGAGGAATTGAGAGCATGTCTTCCAGTTTTTCG
ccttaaatgttttaaaaacttcCTTATCTATGGAAATTCGTTATTGTATT
GCTATCGTTTACCCTTTTGAAACGCACGATCCAGTCGTCATATCTCAAAA
GGTACGTCTCCCCaagacacgtttttttataaaaaaaagatccAGAACTA
TCGAAGCTTTCCGAAATTCTTAACTTTacgagtttcaagcctaaaaattt
tcttaacttattcttaatattttgaccatcgatgaagtcttatgttttta
tacagtttgttcttatataaaaaacgtgatgCTCGATTGAGAATAAGCTC
AGCGACTAAATTCATGGAGCAAGAAAGAAAGCAAGCTTCATTTTGATCGC
CTCAGAAAATTGCTTGGTGCGTGCGAGAGACGTTGAACAAAATATTCCTA
ACCAGAAAGTGTTAAAACTGATAATAAGATTAATTTGGAACGTACAGTAA
CGATAATTGTAAAAAAGACTGAGACAAATTAATTAAATAGACaaataatc
tgaaaatattacaaaaatacAGAAATAAAACATAATAAATACTATTCGTA
ACAAATGGACGTAGAAAACTTTCATAAGTTTCCCAGCTAACAAATTGTTG
TTTCAAGCTATGGATGTTGGAACGAGAGAAGATTATTGAAATAACTTTAT
TTCATTTCTTgaccaaaaataataaaaaagaagttGAAATTAGTCTTTCT
GACTTAACCTTTTAAGCCCGAAATTTCATAGTTTACATTATAGACAACTA
CAGGCTTTTAGGCCCTAGAGTATAAGTTTCACGCTAGCCTAGAAATTAGA
TTCAACAAGTTTGATAACAAATGACAAATTTTAAGAGAAGATCCAAAgaa
cttaaaaaacaaaacatgtttcaaaaaaaattgcaaacttCAGCATCAAG
CTCGTAAGTATCCGACCCATGCACCAAGACTATGGTCGCCAAAATCCATA
ATATCATAAATATCAACAACCTTATGGCAGCAATTTTAAACTCTCTTTGA
CGTCATCAATGATGCAAAATAAAGCGATACAGTCAATAACATCTGAACAC
CGAGACTCTGAATGAATGAAAGCAGAGCAAAAGCAAGGTCGCCAAAGAAC
TCATTTAACTTGCCATGAAAAATCAGGAAAGAAAAACGGTTTTCTTTTCG
ATACAAAGCAGATCATAAAACCTGCCACTTTCTTACAGCAACTGATCATC
GGGGACTTTGTTGAAGCGAGCTTTACTGAACAAAACAGCCGGTCTATGCT
CAATCAACCACATCCCGGATGAACTCTGCGGGTGTGTGTACGCGTAATAA
AACATGACTAGTATTATGAGGAGCACCATTATTACGAGGAACCCAACTAT
CCCTCCAATAAGCGCACCGTTATTTGAGCTTTGCTTTTTCTTAGTCATTG
TATTAGTGTCTTTGCCTGGTATTTGAGCTGAGCATTTCTCAGGGTCATCG
TAAGCTGTTTTAGCACATCTTGACATCCAAGATTGCCGATGCCAATCCAA
ACCATTCGAACAACGCTGCAACGAGGGACACCATTTACAATTAAACCTCG
TATTGTTTTTATTAAGGCAAGCACCACATGTGGTCTGTCGAATACACGTT
GGTTCAAGATCCAAAATAAACGCCGAACCAGAGATTGGATTTCGTAAGGG
TAAAGAAATGCGATGATATGAATAAATGTAATTATGGAAGTGTATTTTAC
CACCTTTATCATATACAAAGGATAGCACAAGTCCGTCAGCGATCCCGATG
GTGACATTATGGGTATCATTAGGTAGCTTTACTGGAGACACTGGTACATC
CTTATAAGCAAAAACAATGGTACCATTTTCATGTAAAATTGTTTGGAAGT
CATATTTCGGACTGCCATCAACTGTATTATTCATCTGCATATTTTTCCAT
TGTACTATGAAAATATCTTTACCAGATCCGACCAGAATCTCAGTCGAATT
ATCGATTGATGGATTGAAATTAGCCATTAACGGTGCAATATAATGCACAA
CATGGGCGTAAGCGTGAAACAACGGACCAACACTGAGGAATCCACCAGTG
GTCACTACAACGCGCTGAACTTTGTTGCCGTAAAAATAGAATGGGAATTT
AAGAGCTACAAAAGCAGCTTTGAGATAAGCTTTTGATAATATCTcatgtt
tttcaatttccaagCCCTCGTATGGTAATGATTCAGTTCCATTTGTTAAA
TCGATAAAATACGATTGACCACGAGTGGTGAATTTCGATGTATAATATCG
GTGATCATCGATTGTATTGATGGTAGTGTTTGTATTTTGATCGTTTTCCT
CCGATTCAGCGAATGTTGTGTTGATTTTTTCTCCTCCTTTTTCAACAATA
GTTGTACGTCTCACGCGATGTTTGAAATCCTTGGATAAAAAAGTCGTTTT
ATCATCTGTCAAAAGTTCATAAAGATTTGAGTTCCCATGGCCCTGGACAT
AAGCAACAGCAGTCAATAAACATAATACTGAGAACAAAGTCTCAAGAGTA
TGCATTTTCTGCTGGCACCGTACGctatttctttcactttttcgtatttt
aatttatttctagAAAAAGAATTAGCTTCTTAAAAGTTCTGTTTAGTTAA
AAGGTTGTCTCTCTCTCtcttaaaa Coding sequence (CDS) from alignment at sc0000264:38167..41291 >TCONS_00017325 ID=TCONS_00017325|Name=TCONS_00017325|organism=Clytia hemisphaerica|type=CDS|length=1323bp|location=Sequence derived from alignment at sc0000264:38167..41291 (Clytia hemisphaerica)
TTACAGCAACTGATCATCGGGGACTTTGTTGAAGCGAGCTTTACTGAACA
AAACAGCCGGTCTATGCTCAATCAACCACATCCCGGATGAACTCTGCGGG
TGTGTGTACGCGTAATAAAACATGACTAGTATTATGAGGAGCACCATTAT
TACGAGGAACCCAACTATCCCTCCAATAAGCGCACCGTTATTTGAGCTTT
GCTTTTTCTTAGTCATTGTATTAGTGTCTTTGCCTGGTATTTGAGCTGAG
CATTTCTCAGGGTCATCGTAAGCTGTTTTAGCACATCTTGACATCCAAGA
TTGCCGATGCCAATCCAAACCATTCGAACAACGCTGCAACGAGGGACACC
ATTTACAATTAAACCTCGTATTGTTTTTATTAAGGCAAGCACCACATGTG
GTCTGTCGAATACACGTTGGTTCAAGATCCAAAATAAACGCCGAACCAGA
GATTGGATTTCGTAAGGGTAAAGAAATGCGATGATATGAATAAATGTAAT
TATGGAAGTGTATTTTACCACCTTTATCATATACAAAGGATAGCACAAGT
CCGTCAGCGATCCCGATGGTGACATTATGGGTATCATTAGGTAGCTTTAC
TGGAGACACTGGTACATCCTTATAAGCAAAAACAATGGTACCATTTTCAT
GTAAAATTGTTTGGAAGTCATATTTCGGACTGCCATCAACTGTATTATTC
ATCTGCATATTTTTCCATTGTACTATGAAAATATCTTTACCAGATCCGAC
CAGAATCTCAGTCGAATTATCGATTGATGGATTGAAATTAGCCATTAACG
GTGCAATATAATGCACAACATGGGCGTAAGCGTGAAACAACGGACCAACA
CTGAGGAATCCACCAGTGGTCACTACAACGCGCTGAACTTTGTTGCCGTA
AAAATAGAATGGGAATTTAAGAGCTACAAAAGCAGCTTTGAGATAAGCTT
TTGATAATATCTcatgtttttcaatttccaagCCCTCGTATGGTAATGAT
TCAGTTCCATTTGTTAAATCGATAAAATACGATTGACCACGAGTGGTGAA
TTTCGATGTATAATATCGGTGATCATCGATTGTATTGATGGTAGTGTTTG
TATTTTGATCGTTTTCCTCCGATTCAGCGAATGTTGTGTTGATTTTTTCT
CCTCCTTTTTCAACAATAGTTGTACGTCTCACGCGATGTTTGAAATCCTT
GGATAAAAAAGTCGTTTTATCATCTGTCAAAAGTTCATAAAGATTTGAGT
TCCCATGGCCCTGGACATAAGCAACAGCAGTCAATAAACATAATACTGAG
AACAAAGTCTCAAGAGTATGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017325-exon-sc0000264-1491911889:38167..41291 | TCONS_00017325-exon-sc0000264-1491911889:38167..41291 | Clytia hemisphaerica | exon |
| TCONS_00017325-exon-sc0000264-1510915933:38167..41291 | TCONS_00017325-exon-sc0000264-1510915933:38167..41291 | Clytia hemisphaerica | exon |
| TCONS_00017325-exon-sc0000264-1575043694:38167..41291 | TCONS_00017325-exon-sc0000264-1575043694:38167..41291 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000264 | supercontig | sc0000264:38167..41291 . |
Blast
BLAST of TCONS_00017325 vs. Swiss-Prot (Human)
Match: PLDX1 (Plexin domain-containing protein 1 OS=Homo sapiens GN=PLXDC1 PE=1 SV=2) HSP 1 Score: 171.4 bits (433), Expect = 6.797e-45 Identity = 98/274 (35.77%), Postives = 149/274 (54.38%), Query Frame = 1
Query: 373 HRYYTSKF----TTRGQSYFIDLTNGTESLPYEGLEIEKHEILSKAYLKAAFVALKFPFYFYGNKVQRVVVTTGGFLSVGPLFHAYAHVVHYIAPLMANFNPSI-DNSTEILVGSGKDIFIVQWKNMQMNNTVDGSPKYDFQTILHENGTIVFAYKDVPVSPVKLPNDTHNVTIGIADG-LVLSFVYDKGGKIHFHNYIYSYHRISLPLRNPISGSAFILDLEPTCIRQTTCGACLNKNNTRFNCKWCPSLQRCSNGLDWHRQSWMS-RCAKTA 1173
H YY S+ + ++D+ S +++ H ILS + +A+ V L F F FYG+ ++++ + TGGF+ +G + H Y+APLMANFNP DNST + +G +F+VQW ++ + D + FQ LH +G IVFAYK++P+S ++ + H V G++D ++L+ D I+ YHRI L S SA PTC++ +C AC++ + T FNC WC LQRCS+G D +RQ WM CA+ A
Sbjct: 89 HSYYVSRLYGPSEPHSRELWVDVAEANRS------QVKIHTILSNTHRQASRVVLSFDFPFYGHPLRQITIATGGFIFMGDVIHRMLTATQYVAPLMANFNPGYSDNSTVVYFDNGT-VFVVQWDHVYLQGWEDKG-SFTFQAALHHDGRIVFAYKEIPMSVPEISSSQHPVKTGLSDAFMILNPSPDVPES--RRRSIFEYHRIELDPSKVTSMSAVEFTPLPTCLQHRSCDACMSSDLT-FNCSWCHVLQRCSSGFDRYRQEWMDYGCAQEA 351
The following BLAST results are available for this feature:
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