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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017732 ID=TCONS_00017732|Name=TCONS_00017732|organism=Clytia hemisphaerica|type=transcript|length=694bp
AAAAGACTCTGTTCAAAAAGCAATGCTATAAAGGTTTCAAACTAATGGGT
TCAAAGTTGACACGAAGTCGAAGCTCAATTTACGGATGTACAAATTGCAG
AATTCAAAGAAGCGTTCGGTCTCTTTGATAAGAATCATGATGGTTCAATT
TCTGTACAAGAACTAGGTGAAGTAATGTCACGAATGGGTTTCGATCCTAC
CGAAGGCGAACTTGAGGATATGCTGCATGACATTAGTGGGAGTGGTGACA
TTGATTTCGAAAAATTCGTCAATATGATGGCCAAAATCAAAAAcgttgat
gaagaagaagaaactaAACTCgCGTTCAAGATGTTTGATAAAGATCAGAA
TGGTTTCATCGacaaagaagaattgaagctagTGATGGCAAGCCTTGGTG
AGCAATTgactgatgatgaaatacaagAAATGATGGCTGAAGCTGATCTT
GATGGTGATGGCACAATAGATTACAACGaattttgtcaaatgatgaacTC
GAAATGATAAAGAAATGTTTGGTTCATATTTGATCATCGAAGTGATCTTG
GATGCAAACCAATGTAAATCAACACTGATTGTCGAGTTTTGTacacacac
ccctgtctcacaaacCTAGGAGCAATCCTGTCAACTCTAAAGGTTTAGAT
ATAATAGACACCGATAGTAAAAAGAAGGAATAATTTCATGCGCC Run BLAST on NCBI transcript from alignment at sc0000274:130686..134436+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017732 ID=TCONS_00017732|Name=TCONS_00017732|organism=Clytia hemisphaerica|type=transcript|length=3751bp|location=Sequence derived from alignment at sc0000274:130686..134436+ (Clytia hemisphaerica)
AAAAGACTCTGTTCAAAAAGCAATGCTATAAAGGTTTCAAACTAATGGGT
TCAAAGTTGACACGAAGTCGAAGTATGTTATCTTCATAATTCTTTTAATC
GATAGtttatttaatttaaatcaaattgataattgagaaaatggaaaaaa
gtaCATCTGTGTGTCGTGACATTCTTGAGCTGTTCAAGAAAAGTGGAtga
tcccaccaacctgaaacgctttctcgtgtacccaccttatttttctttta
ataacatttgtgctttactcacttttgtccctgggacaatggagcaaaat
tgattagAATTGATTTTGCCAATTGTCCCAGAGACAatatcagcgtgtct
tttgggtatttccctcactttttaacaaaaaaagaaaccatgagacgcgc
actttttttcttgtgttggtgggatggagcatgttgcattgcacaaaCGC
AAAAAAAACTTATCGTCTCCCCAAGCCTTACAAAACTGTAGATNGCATTG
CACaaacgcaaaaaaaacttctcgtgtccccaagccttaaaaaCCTGTAG
ATTTTTACGTTTGGCGTAAAAACATGAtttgaaaaaccaacttttaattt
tcaataagtcGCAGTTCAGTTCAAAAGATTGGAACTTTAATAACACAGAG
GTCAGTATTATTTCTCTTACCATAATCACCTTATCACATTTGAACATCCA
ACTTGACATATTTCCTGCTATCGTtcacaatcaaaacaaacagcatgata
aaaaatgataaatagcACATTCATACTATTCATTcagttttctaaaaaat
gatcaGTAATTATCTAGTTTTTGCGTTGtgtttttgtcaaagttttatTC
ACTGAAATACTTTCTCTGCTGTCGAAATTTGTTGATTTGAATTCTGATTG
GTAACTGCTCCAAAATGGCGCAAGTAGAAGACCAGGTAAGATTGTAGGAT
gcaattgttttatttttacgtaGAGTTGACAAAGTGCGCATGCGTCGTAT
CCGGAATTACGGATTATAAAGGGCTAGGTAGACTAgacttccagaaaaaa
aaacgtatTCATAATCTAGATCTCCGCCAGAGTTCCTGAAAACATATATA
TCAGAATATTTTTCGATTAAAAAGTAACATCAAACTTTCTTGGTGGTCCA
AAAACTTGCACTTTTTGAAGGAAATTTATTTCCTAGTCGAAATTTTTTAA
GCTAAATACTTTTTGGACTACATTCTATTTAcgaaataccttatcggggg
aaaaaatgtcggagttttatttagtcggggtttttttcgttggggaaaaa
tttcgtcacctagaggcattttcgtcactttcccccgacatttttttccc
cgataaggtacttgACAGTAAAGGTACTATCTTTTACGCAGattctaaga
aaaaaataaaacgttAATTTTGCATACTGACAGTTTCATGCCGTCTTAAG
CAACTCATCTTCAGTTTTTCTAGAAAATTCCACAGTGCAATGTCTTAAAA
GTTTATGAACGTCCAGAGTTATTCGAATGCTATTAAGATAATTTTTCGCC
TATATGGTGGAATTTGGTGATTATGTAAGTACTatcttttatttgaattt
taagGCTCAATTTACGGATGTACAAATTGCAGAATTCAAAGAAGCGTTCG
GTCTCTTTGATAAGAATCATGATGGTTCAATTTCTGTACAAGAACTAGGT
GAAGTAATGTCACGAATGGGTTTCGATCCTACCGAAGGCGAACTTGAGGA
TATGCTGCATGACATTAGTGGGAGTGGTGACATTGATTTCGAAAAATTCG
TCAATATGATGGCCAAAATCAAAAAcgttgatgaagaagaagaaactaAA
CTCGTTaatatactttctttttttatgacacCATTTCATATTTCGTGTCC
GGCAAAtgattttcatctttattttttgagcTCTAGTTTAAGCTGTGAGC
AAATAAAACGTACCACAATAAGCTCTAAACACGTGATCTTTAAAAGGTAA
ATAGCCCTAAAAAAAGTTTctgtgaagtttttttgaacttttgaactaCA
CAAAACAATATTCGAAATTTTGGTACTCCGTACGGGTAAGAGTAAATCTT
GTATTTTTCTATCTTTGATCTGGAGTTTTCTTGCGCTTCTGACTCTTTAG
GATGTTTCGAAGTTGGACTTAGTCAGTTTTAGAGTTCaactttgatattt
tgaaatttgtcaAAGTTGAGTTTTGAGTGGTGGTATTCGAACCTACACAT
GAAAAGTACCTTTGGCTCAGAAGCTCCGTACTCTACCACTAGACCACAGA
ATTTACGGCCTAAATCTGAATGCACAATCTACTTATAGCGTGTAGTTTAC
AGACCTATTTGTATTGACATACCAAGGTTAGCCTCAACCCTAGGGCCTAG
AGCTCTATATTTACCTACCAATACTACTCCCAACTCTATTTTGACTCTCG
aactccaaccctgaccctaactgatccTGACCCTAACCGATATAAACGAT
TTTCACCCGTACGCATTCAATAACAAAAAATCTACTTTCGCCCGATTtcc
agccaaatttttcctgcactgtaagggtccgattttagagacctgatttt
tggccgaacgtacggtcgttttcaaaatcgagtgcccccccccaggcttt
ctgcctactctaacaattagaattgGTAAAACAGAGAGTCGGCCGTCTGA
ACTAGAACTAactaatgaatgaatgaatgaataccattttgttttcaaaa
ggCGTTCAAGATGTTTGATAAAGATCAGAATGGTTTCATCGacaaagaag
aattgaagctagTGATGGCAAGCCTTGGTGAGCAATTgactgatgatgaa
atacaagAAATGATGGCTGAAGCTGATCTTGATGGTGATGGCACAATAGA
TTACAACGGTATGTACTAGAAAAATTTGAGTGAGGCGAATTCACGATAAA
AAAGTGTAGCTGTAAAGTTTAGCTTTCCATCGTACTCAATACAAGATATA
CGTCCCTCACATTGAGTTTAACTTCAaagtaattttaaaagtttctgtat
caaaatgtcaattttaccCAATAACTGACCCTTACAATGCATTAGTCGCA
ctttagtttttcaaaagatttttacatttagattttaataaatCTTTCAG
TTAAAGCCTGGAGGTTTTAGAATCATGTACGTACTTTGATTGAGTGTCTT
TCCCGATCTTTTGCTTCTAAACCAATCATAAACGTTCTCCTCTTTATTTT
TTGCTTCTAAACCAATCATAAACGTtctcctttttattttttgcttctAA
ACCAATCATAAACGTTCTCCTCTTTATTTTTTGCTTCTAAACCAATCATA
AACGTtctcctttttattttttgcttctAAACCAATCATAAACGTtctcc
tttttattttttgcttctAAACCAATCATAAACGTTCTCCTCTTTATTTT
TTGCTTCTAAACCAATCATAAACGTTCTCCTCTTTATTTTTTGCCTCTAA
ACCAATCATAAACGTTCTCCTTTTtatttttgcagaattttgtcaaatga
tgaacTCGAAATGATAAAGAAATGTTTGGTTCATATTTGATCATCGAAGT
GATCTTGGATGCAAACCAATGTAAATCAACACTGATTGTCGAGTTTTGTa
cacacacccctgtctcacaaacCTAGGAGCAATCCTGTCAACTCTAAAGG
TTTAGATATAATAGACACCGATAGTAAAAAGAAGGAATAATTTCATGCGC
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017732-exon-sc0000274-1491911889:130686..130757 | TCONS_00017732-exon-sc0000274-1491911889:130686..130757 | Clytia hemisphaerica | exon |
| TCONS_00017732-exon-sc0000274-1510915933:130686..130757 | TCONS_00017732-exon-sc0000274-1510915933:130686..130757 | Clytia hemisphaerica | exon |
| TCONS_00017732-exon-sc0000274-1575043694:130686..130757 | TCONS_00017732-exon-sc0000274-1575043694:130686..130757 | Clytia hemisphaerica | exon |
| TCONS_00017732-exon-sc0000274-1491911889:132290..132538 | TCONS_00017732-exon-sc0000274-1491911889:132290..132538 | Clytia hemisphaerica | exon |
| TCONS_00017732-exon-sc0000274-1510915933:132290..132538 | TCONS_00017732-exon-sc0000274-1510915933:132290..132538 | Clytia hemisphaerica | exon |
| TCONS_00017732-exon-sc0000274-1575043694:132290..132538 | TCONS_00017732-exon-sc0000274-1575043694:132290..132538 | Clytia hemisphaerica | exon |
| TCONS_00017732-exon-sc0000274-1491911889:133437..133593 | TCONS_00017732-exon-sc0000274-1491911889:133437..133593 | Clytia hemisphaerica | exon |
| TCONS_00017732-exon-sc0000274-1510915933:133437..133593 | TCONS_00017732-exon-sc0000274-1510915933:133437..133593 | Clytia hemisphaerica | exon |
| TCONS_00017732-exon-sc0000274-1575043694:133437..133593 | TCONS_00017732-exon-sc0000274-1575043694:133437..133593 | Clytia hemisphaerica | exon |
| TCONS_00017732-exon-sc0000274-1491911889:134221..134436 | TCONS_00017732-exon-sc0000274-1491911889:134221..134436 | Clytia hemisphaerica | exon |
| TCONS_00017732-exon-sc0000274-1510915933:134221..134436 | TCONS_00017732-exon-sc0000274-1510915933:134221..134436 | Clytia hemisphaerica | exon |
| TCONS_00017732-exon-sc0000274-1575043694:134221..134436 | TCONS_00017732-exon-sc0000274-1575043694:134221..134436 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000274 | supercontig | sc0000274:130686..134436 + |
Blast
BLAST of TCONS_00017732 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 2.456e-50 Identity = 83/146 (56.85%), Postives = 112/146 (76.71%), Query Frame = 1
Query: 76 QFTDVQIAEFKEAFGLFDKNHDGSISVQELGEVMSRMGFDPTEGELEDMLH--DISGSGDIDFEKFVNMMA-KIKNVDEEEETKLAFKMFDKDQNGFIDKEELKLVMASLGEQLTDDEIQEMMAEADLDGDGTIDYNEFCQMMNSK 504
Q T+ QIAEFKEAF LFDK+ DG+I+ +ELG VM +G +PTE EL+DM++ D G+G IDF +F+ MMA K+K+ D EEE + AF++FDKD NG+I EL+ VM +LGE+LTD+E+ EM+ EAD+DGDG ++Y EF QMM +K
Sbjct: 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
The following BLAST results are available for this feature:
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