TCONS_00017733 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017733
Unique NameTCONS_00017733
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length771

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017733 ID=TCONS_00017733|Name=TCONS_00017733|organism=Clytia hemisphaerica|type=transcript|length=771bp
gttttctaaaaaatgatcaGTAATTATCTAGTTTTTGCGTTGtgtttttg
tcaaagttttatTCACTGAAATACTTTCTCTGCTGTCGAAATTTGTTGAT
TTGAATTCTGATTGGTAACTGCTCCAAAATGGCGCAAGTAGAAGACCAGG
CTCAATTTACGGATGTACAAATTGCAGAATTCAAAGAAGCGTTCGGTCTC
TTTGATAAGAATCATGATGGTTCAATTTCTGTACAAGAACTAGGTGAAGT
AATGTCACGAATGGGTTTCGATCCTACCGAAGGCGAACTTGAGGATATGC
TGCATGACATTAGTGGGAGTGGTGACATTGATTTCGAAAAATTCGTCAAT
ATGATGGCCAAAATCAAAAAcgttgatgaagaagaagaaactaAACTCgC
GTTCAAGATGTTTGATAAAGATCAGAATGGTTTCATCGacaaagaagaat
tgaagctagTGATGGCAAGCCTTGGTGAGCAATTgactgatgatgaaata
caagAAATGATGGCTGAAGCTGATCTTGATGGTGATGGCACAATAGATTA
CAACGaattttgtcaaatgatgaacTCGAAATGATAAAGAAATGTTTGGT
TCATATTTGATCATCGAAGTGATCTTGGATGCAAACCAATGTAAATCAAC
ACTGATTGTCGAGTTTTGTacacacacccctgtctcacaaacCTAGGAGC
AATCCTGTCAACTCTAAAGGTTTAGATATAATAGACACCGATAGTAAAAA
GAAGGAATAATTTCATGCGCC
Run BLAST on NCBI

protein sequence of TCONS_00017733-protein

>TCONS_00017733-protein ID=TCONS_00017733-protein|Name=TCONS_00017733-protein|organism=Clytia hemisphaerica|type=polypeptide|length=151bp
MAQVEDQAQFTDVQIAEFKEAFGLFDKNHDGSISVQELGEVMSRMGFDPT
EGELEDMLHDISGSGDIDFEKFVNMMAKIKNVDEEEETKLAFKMFDKDQN
GFIDKEELKLVMASLGEQLTDDEIQEMMAEADLDGDGTIDYNEFCQMMNS
K
Run BLAST on NCBI

transcript from alignment at sc0000274:131472..134436+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017733 ID=TCONS_00017733|Name=TCONS_00017733|organism=Clytia hemisphaerica|type=transcript|length=2965bp|location=Sequence derived from alignment at sc0000274:131472..134436+ (Clytia hemisphaerica)
gttttctaaaaaatgatcaGTAATTATCTAGTTTTTGCGTTGtgtttttg
tcaaagttttatTCACTGAAATACTTTCTCTGCTGTCGAAATTTGTTGAT
TTGAATTCTGATTGGTAACTGCTCCAAAATGGCGCAAGTAGAAGACCAGG
TAAGATTGTAGGATgcaattgttttatttttacgtaGAGTTGACAAAGTG
CGCATGCGTCGTATCCGGAATTACGGATTATAAAGGGCTAGGTAGACTAg
acttccagaaaaaaaaacgtatTCATAATCTAGATCTCCGCCAGAGTTCC
TGAAAACATATATATCAGAATATTTTTCGATTAAAAAGTAACATCAAACT
TTCTTGGTGGTCCAAAAACTTGCACTTTTTGAAGGAAATTTATTTCCTAG
TCGAAATTTTTTAAGCTAAATACTTTTTGGACTACATTCTATTTAcgaaa
taccttatcgggggaaaaaatgtcggagttttatttagtcggggtttttt
tcgttggggaaaaatttcgtcacctagaggcattttcgtcactttccccc
gacatttttttccccgataaggtacttgACAGTAAAGGTACTATCTTTTA
CGCAGattctaagaaaaaaataaaacgttAATTTTGCATACTGACAGTTT
CATGCCGTCTTAAGCAACTCATCTTCAGTTTTTCTAGAAAATTCCACAGT
GCAATGTCTTAAAAGTTTATGAACGTCCAGAGTTATTCGAATGCTATTAA
GATAATTTTTCGCCTATATGGTGGAATTTGGTGATTATGTAAGTACTatc
ttttatttgaattttaagGCTCAATTTACGGATGTACAAATTGCAGAATT
CAAAGAAGCGTTCGGTCTCTTTGATAAGAATCATGATGGTTCAATTTCTG
TACAAGAACTAGGTGAAGTAATGTCACGAATGGGTTTCGATCCTACCGAA
GGCGAACTTGAGGATATGCTGCATGACATTAGTGGGAGTGGTGACATTGA
TTTCGAAAAATTCGTCAATATGATGGCCAAAATCAAAAAcgttgatgaag
aagaagaaactaAACTCGTTaatatactttctttttttatgacacCATTT
CATATTTCGTGTCCGGCAAAtgattttcatctttattttttgagcTCTAG
TTTAAGCTGTGAGCAAATAAAACGTACCACAATAAGCTCTAAACACGTGA
TCTTTAAAAGGTAAATAGCCCTAAAAAAAGTTTctgtgaagtttttttga
acttttgaactaCACAAAACAATATTCGAAATTTTGGTACTCCGTACGGG
TAAGAGTAAATCTTGTATTTTTCTATCTTTGATCTGGAGTTTTCTTGCGC
TTCTGACTCTTTAGGATGTTTCGAAGTTGGACTTAGTCAGTTTTAGAGTT
CaactttgatattttgaaatttgtcaAAGTTGAGTTTTGAGTGGTGGTAT
TCGAACCTACACATGAAAAGTACCTTTGGCTCAGAAGCTCCGTACTCTAC
CACTAGACCACAGAATTTACGGCCTAAATCTGAATGCACAATCTACTTAT
AGCGTGTAGTTTACAGACCTATTTGTATTGACATACCAAGGTTAGCCTCA
ACCCTAGGGCCTAGAGCTCTATATTTACCTACCAATACTACTCCCAACTC
TATTTTGACTCTCGaactccaaccctgaccctaactgatccTGACCCTAA
CCGATATAAACGATTTTCACCCGTACGCATTCAATAACAAAAAATCTACT
TTCGCCCGATTtccagccaaatttttcctgcactgtaagggtccgatttt
agagacctgatttttggccgaacgtacggtcgttttcaaaatcgagtgcc
cccccccaggctttctgcctactctaacaattagaattgGTAAAACAGAG
AGTCGGCCGTCTGAACTAGAACTAactaatgaatgaatgaatgaatacca
ttttgttttcaaaaggCGTTCAAGATGTTTGATAAAGATCAGAATGGTTT
CATCGacaaagaagaattgaagctagTGATGGCAAGCCTTGGTGAGCAAT
TgactgatgatgaaatacaagAAATGATGGCTGAAGCTGATCTTGATGGT
GATGGCACAATAGATTACAACGGTATGTACTAGAAAAATTTGAGTGAGGC
GAATTCACGATAAAAAAGTGTAGCTGTAAAGTTTAGCTTTCCATCGTACT
CAATACAAGATATACGTCCCTCACATTGAGTTTAACTTCAaagtaatttt
aaaagtttctgtatcaaaatgtcaattttaccCAATAACTGACCCTTACA
ATGCATTAGTCGCActttagtttttcaaaagatttttacatttagatttt
aataaatCTTTCAGTTAAAGCCTGGAGGTTTTAGAATCATGTACGTACTT
TGATTGAGTGTCTTTCCCGATCTTTTGCTTCTAAACCAATCATAAACGTT
CTCCTCTTTATTTTTTGCTTCTAAACCAATCATAAACGTtctccttttta
ttttttgcttctAAACCAATCATAAACGTTCTCCTCTTTATTTTTTGCTT
CTAAACCAATCATAAACGTtctcctttttattttttgcttctAAACCAAT
CATAAACGTtctcctttttattttttgcttctAAACCAATCATAAACGTT
CTCCTCTTTATTTTTTGCTTCTAAACCAATCATAAACGTTCTCCTCTTTA
TTTTTTGCCTCTAAACCAATCATAAACGTTCTCCTTTTtatttttgcaga
attttgtcaaatgatgaacTCGAAATGATAAAGAAATGTTTGGTTCATAT
TTGATCATCGAAGTGATCTTGGATGCAAACCAATGTAAATCAACACTGAT
TGTCGAGTTTTGTacacacacccctgtctcacaaacCTAGGAGCAATCCT
GTCAACTCTAAAGGTTTAGATATAATAGACACCGATAGTAAAAAGAAGGA
ATAATTTCATGCGCC

Coding sequence (CDS) from alignment at sc0000274:131472..134436+

>TCONS_00017733 ID=TCONS_00017733|Name=TCONS_00017733|organism=Clytia hemisphaerica|type=CDS|length=1824bp|location=Sequence derived from alignment at sc0000274:131472..134436+ (Clytia hemisphaerica)
ATGGCGCAAGTAGAAGACCAGGCTCAATTTACGGATGTACAAATTGCAGA
ATTCAAAGAAGCGTTCGGTCTCTTTGATAAGAATCATGATGGTTCAATTT
CTGTACAAGAACTAGGTGAAGTAATGTCACGAATGGGTTTCGATCCTACC
GAAGGCGAACTTGAGGATATGCTGCATGACATTAGTGGGAGTGGTGACAT
TGATTTCGAAAAATTCGTCAATATGATGGCCAAAATCAAAAAcgttgatg
aagaagaagaaactaAACTCgCGTTCAAGATGTTTGATAAAGATCAGAAT
GGTTTCATCGacaaagaagaattgaagctagTGATGGCAAGCCTTGGTGA
GCAATTgactgatgatgaaatacaagAAATGATGGCTGAAGCTGATCTTG
ATGGTGATGGCACAATAGATTACAACGaattttgtcaaatgatgaacTCG
AAATGAATGGCGCAAGTAGAAGACCAGGCTCAATTTACGGATGTACAAAT
TGCAGAATTCAAAGAAGCGTTCGGTCTCTTTGATAAGAATCATGATGGTT
CAATTTCTGTACAAGAACTAGGTGAAGTAATGTCACGAATGGGTTTCGAT
CCTACCGAAGGCGAACTTGAGGATATGCTGCATGACATTAGTGGGAGTGG
TGACATTGATTTCGAAAAATTCGTCAATATGATGGCCAAAATCAAAAAcg
ttgatgaagaagaagaaactaAACTCgCGTTCAAGATGTTTGATAAAGAT
CAGAATGGTTTCATCGacaaagaagaattgaagctagTGATGGCAAGCCT
TGGTGAGCAATTgactgatgatgaaatacaagAAATGATGGCTGAAGCTG
ATCTTGATGGTGATGGCACAATAGATTACAACGaattttgtcaaatgatg
aacTCGAAATGAATGGCGCAAGTAGAAGACCAGGCTCAATTTACGGATGT
ACAAATTGCAGAATTCAAAGAAGCGTTCGGTCTCTTTGATAAGAATCATG
ATGGTTCAATTTCTGTACAAGAACTAGGTGAAGTAATGTCACGAATGGGT
TTCGATCCTACCGAAGGCGAACTTGAGGATATGCTGCATGACATTAGTGG
GAGTGGTGACATTGATTTCGAAAAATTCGTCAATATGATGGCCAAAATCA
AAAAcgttgatgaagaagaagaaactaAACTCgCGTTCAAGATGTTTGAT
AAAGATCAGAATGGTTTCATCGacaaagaagaattgaagctagTGATGGC
AAGCCTTGGTGAGCAATTgactgatgatgaaatacaagAAATGATGGCTG
AAGCTGATCTTGATGGTGATGGCACAATAGATTACAACGaattttgtcaa
atgatgaacTCGAAATGAATGGCGCAAGTAGAAGACCAGGCTCAATTTAC
GGATGTACAAATTGCAGAATTCAAAGAAGCGTTCGGTCTCTTTGATAAGA
ATCATGATGGTTCAATTTCTGTACAAGAACTAGGTGAAGTAATGTCACGA
ATGGGTTTCGATCCTACCGAAGGCGAACTTGAGGATATGCTGCATGACAT
TAGTGGGAGTGGTGACATTGATTTCGAAAAATTCGTCAATATGATGGCCA
AAATCAAAAAcgttgatgaagaagaagaaactaAACTCgCGTTCAAGATG
TTTGATAAAGATCAGAATGGTTTCATCGacaaagaagaattgaagctagT
GATGGCAAGCCTTGGTGAGCAATTgactgatgatgaaatacaagAAATGA
TGGCTGAAGCTGATCTTGATGGTGATGGCACAATAGATTACAACGaattt
tgtcaaatgatgaacTCGAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009932XLOC_009932Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017733-exon-sc0000274-1491911889:131472..131620TCONS_00017733-exon-sc0000274-1491911889:131472..131620Clytia hemisphaericaexon
TCONS_00017733-exon-sc0000274-1510915933:131472..131620TCONS_00017733-exon-sc0000274-1510915933:131472..131620Clytia hemisphaericaexon
TCONS_00017733-exon-sc0000274-1575043694:131472..131620TCONS_00017733-exon-sc0000274-1575043694:131472..131620Clytia hemisphaericaexon
TCONS_00017733-exon-sc0000274-1491911889:132290..132538TCONS_00017733-exon-sc0000274-1491911889:132290..132538Clytia hemisphaericaexon
TCONS_00017733-exon-sc0000274-1510915933:132290..132538TCONS_00017733-exon-sc0000274-1510915933:132290..132538Clytia hemisphaericaexon
TCONS_00017733-exon-sc0000274-1575043694:132290..132538TCONS_00017733-exon-sc0000274-1575043694:132290..132538Clytia hemisphaericaexon
TCONS_00017733-exon-sc0000274-1491911889:133437..133593TCONS_00017733-exon-sc0000274-1491911889:133437..133593Clytia hemisphaericaexon
TCONS_00017733-exon-sc0000274-1510915933:133437..133593TCONS_00017733-exon-sc0000274-1510915933:133437..133593Clytia hemisphaericaexon
TCONS_00017733-exon-sc0000274-1575043694:133437..133593TCONS_00017733-exon-sc0000274-1575043694:133437..133593Clytia hemisphaericaexon
TCONS_00017733-exon-sc0000274-1491911889:134221..134436TCONS_00017733-exon-sc0000274-1491911889:134221..134436Clytia hemisphaericaexon
TCONS_00017733-exon-sc0000274-1510915933:134221..134436TCONS_00017733-exon-sc0000274-1510915933:134221..134436Clytia hemisphaericaexon
TCONS_00017733-exon-sc0000274-1575043694:134221..134436TCONS_00017733-exon-sc0000274-1575043694:134221..134436Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017733-proteinTCONS_00017733-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000274supercontigsc0000274:131472..134436 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.126255	0.184678	0	0	0	0	0	0	0	0	0.319784	0	9.11058	7.71738	0	0	20.7093	23.5093	8.05273	5.33685	49.6828	43.9419	2.82286	3.55346	5.44155	6.18095	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
[Close]
BLAST of TCONS_00017733 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.279e-50
Identity = 83/146 (56.85%), Postives = 112/146 (76.71%), Query Frame = 3 
Query:  153 QFTDVQIAEFKEAFGLFDKNHDGSISVQELGEVMSRMGFDPTEGELEDMLH--DISGSGDIDFEKFVNMMA-KIKNVDEEEETKLAFKMFDKDQNGFIDKEELKLVMASLGEQLTDDEIQEMMAEADLDGDGTIDYNEFCQMMNSK 581
            Q T+ QIAEFKEAF LFDK+ DG+I+ +ELG VM  +G +PTE EL+DM++  D  G+G IDF +F+ MMA K+K+ D EEE + AF++FDKD NG+I   EL+ VM +LGE+LTD+E+ EM+ EAD+DGDG ++Y EF QMM +K
Sbjct:    4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK 149
The following BLAST results are available for this feature:
BLAST of TCONS_00017733 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM33.279e-5056.85Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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