TCONS_00018006 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018006
Unique NameTCONS_00018006
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1997

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018006 ID=TCONS_00018006|Name=TCONS_00018006|organism=Clytia hemisphaerica|type=transcript|length=1997bp
GCACAATCGAAGCTGGTTTTATGGCTTTGCTTTTTTGCTTTGTCAATTCG
TAGCAAGTCAAGGCATAAAGATCACCGTGCAAGAACCAGAAGAATACGAA
CTTGGGAAACCAGCAGATATAAAATGGACAATAGATTTTGAGAGGACATA
CGACATAGAGTCAACTCAActatttttaaacgaaaatggTGCTCGTACTA
AAATTGGAGATAATGGAAAAAGCATTGTTTTACCGAAAAATTTAAAGGAT
AAAGTCGTTGTTACAGTTGGCCCATACTCGGCGATATTGACCATCAAAGA
CCCTTTATATACAGATAGTGGATTAAACTTCACATGTCAAGCGGTTGGGA
CGATCACGACCCCACCATTTGGGGTAGAAATCGCTGAGAAAGGAGTTGTT
GTTGGAGATATAAAAGGTGGCGTAAAAAGTGTTTGTGGgggttttgaaat
taaaaatgagtATATTTTACCGGAAGCAGATGGCATGAGTAAATTTCCCC
TCACTTTATGTGGAAACCCTCAACCTAATCTAATGTATACTTGGAACGGA
AAGACAAAGAAAGCAGTTTGGAAGGAAGTTAATCCAGAAAAGAAAATGTA
CCAGTACCAGCTCGAGTttgaaaatgtaaacagaaaacAATGtggctcaa
aaattaaattccaaGCGACAGGGTTCAAGCCTTGGAAACACGAATCGAAT
CTCAAAGTATCATACAAACCTAGGGTTGCTGGTATCAACGCTGTCAAAGA
AATGCGATTTAGCGGCCAAAACTGTACAGTTTTCAAAATGCCAACACCAG
CATGTCAGGAAAAATACAATTTCTTTGGCTATGACAGCAGGGAAACTGAA
ATATGGAAATCTTTGGAGTATGAGGGAAATGAGTTTGAAGATTGTAGTGA
CAAAGACTTGTTCAAAGACATCAAATTTGTTAAAGTTCAAGCAATCAGTT
GGAACAATAAAGCCGGAGATATGTCTGATTTTGTGGAAGTTGAAGAAGAA
TTAATTGAAAAGGAAATTCCGATTCGAAAGAGCAGCAACACGACGTTGAT
CGTGACAATCGTGTGCATTGTCTTGATCGTTGTTGTCATCTTCGTAATCT
TCTTCGTATGCAAGAAATATAATCagAAAATGAACAAAACCAGAGCTGGT
ACCAAAAGCACTGGAAGTAAACAGTTTAAAATTAAGGACCGGAAAACAAG
TGGATCTTACTCTCTTAATACTAACACGTGAACCATtctatctggtctgt
aaaataaacgTTTAACACGAATCGGAAAACTAAATCGTTAACTTTAAAGT
TAAATCCGAAAGACTTTTGGAAACATTGAAAAATGAACATGATAAAAAGA
CATGTTTCATGTTTTTGTTATGTCACATGCTAGGATagcttccgccatta
tggaagcaaacgttcaaATCTGCAAAAGTGATCCGTTGCGTCActaacct
ttatatatcccttgACCTagctatatctgccatctttgatcgaggTTTTG
CAACCATTGCAgcgttaaaaattaacgtctaacggcactacgtcatcaaa
agttttcgagggaaagtatATCTAGCGCTTTTGATGAATTTAATCCTCTA
TTTTGACCagatccgccaaattaagttcccgccaaaatttcttccctgcG
TAAATAAAACGTTTGTTTGCATAATGGCGGTAGTGAGTATGTGATTTAAT
AAAGCATGAAAAATCTCTATTCTCAAACTACTCGGTGTTCGCCAATTGAA
GTTATTGTTCTCTATTGAAGGCTGCAGACTGCATTTGAATAACCGAAATA
TATGttaattgaatattttaaacTGGCATACCATTAACgtaaaataaaat
caatgatCTGGAAATTCTAAACCTAAAAAATACTCTAGCAATGATATCAA
ttgacgatatcggcttaacgtgaaaactcagatttgacttCCGaaaattc
cccacaatgctttgtgcggaaagaATTTCACcttgaacttttttccg
Run BLAST on NCBI

transcript from alignment at sc0000282:167351..173944-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018006 ID=TCONS_00018006|Name=TCONS_00018006|organism=Clytia hemisphaerica|type=transcript|length=6594bp|location=Sequence derived from alignment at sc0000282:167351..173944- (Clytia hemisphaerica)
GCACAATCGAAGCTGGTTTTATGGCTTTGCTTTTTTGCTTTGTCAATTCG
TAGCAAGTCAAGGTATGTTATATATTCGTGGTTGTTTTGTCGTTTTGTGA
CGCCTATCCCGATTTATAGTCCACCCTTAAGTTCATATTGCATACCTTAT
CGGCCCTTTTTACACAGGCCCTTATTGGCGTTATTTTTGGGCTCGTGGCA
TAATAAGGGCCGGCGTTGAAATGGCCGGCGTAAAAAGGGCCAAGATTTTG
CAATTTTAACCTAAAAGCGGCGTTAATTTTTTTAATCATTATTTCTCAAC
TGAAGGGATTTTAGGTATGATTCAAAGACGAAAATTATCTATTGTTTTAC
TCCATATTTAAAACCTTAGTGAAAGATTTAAAATATTTAAAAATCAGTCA
AAAATCAAATTTTCGATGGAATTTTCAACATTTTACTACCATCGATGTTA
CTACTGAAAAATGACATTTTAATGTAAATTTTAGTCATTATTTACTAATT
TGAAGCATAGTAGCCATTTTAAAGATTTTGGCGTTATTAACGGCCCAAAT
TGGCGTAAACCCAAAATTAGGTTGTAACGTAATAAGGGCCGGCGTAAAAG
GGGCCAGCGTTAAATTAGGGCCGGCGTAAAAAGGGCCGATAAGGTATGAA
ATTTTCATCATGAATTTTGCCCTTTGTGTATCGAAGTTTGAAATACAATT
ATCATAAAAAAGGTAGGTTGTGAAGCCAGAGAGTACCATATCCCCTCCAG
GAGTCCTAGAGATGAGAAACTGATGATATAAAGCAAGTGATTTAAATTAG
TACTAGTAATAACATGGTTTGGAGGGTGATTTGGGATTAATAACTTTAAT
TAATTGGGGTTATTAATCCAAAATCACCCGAGAATACCATGTTATTCCGC
GTTAATTATATGGTCAAAAAAAGAATTGAAGAATAATCAATCGTTTTTTT
TTTGTTTTTTTTCGAAACTTATAAAAACATTCGAAACTATAAAAAACATT
TGATTGACACTCTTATCTAGATTTGCTTAAAATTTTTGTGCGATATTTTG
TTAACCAATCAAAATGCGCTGAAGATATTGTACGATACTTTTCAACCAAT
AGAAATTCTTGTTTACATCAGGGCGATTACAAAAAAGCGGGGTTATTACG
GATTTATCGCCCCGCTCGTCCCTTACAAATTTAAGCTAAATGTAATCAAC
CATATAATTACAGTAATTATAACCCGCAAAACATTTTAAAAAGATTTTTT
ATCATTACGTTTTCAGGCATAAAGATCACCGTGCAAGAACCAGAAGAATA
CGAACTTGGGAAACCAGCAGATATAAAATGGACAATAGATTTTGAGAGGA
CATACGACATAGAGTCAACTCAACTATTTTTAAACGAAAATGGTGCTCGT
ACTAAAATTGGAGATAATGGAAAAAGCATTGTTTTACCGAAAAATTTAAA
GGATAAAGTCGTTGTTACAGTTGGCCCATACTCGGCGATATTGACCATCA
AAGACCCTTTATATACAGATAGTGGATTAAACTTCACATGTCAAGCGGTT
GGGACGATCACGACCCCACCATTTGGGGTAGAAATCGCTGAGAAAGGAGT
TGTTGTTGGAGATATAAAAGGTTTGTTAATCACTCGGATGTACTTATTTT
AAACATTTAGTGACCAAAAGTTTTTAGTTCTCGAATTTTCGTGAAAAAGA
ATTAAATTTTGGGCACTTGTTGACGAAATACCTTTAATACCATAGTCGGA
AAATTAGTTTCAGTATCTGAACATAAAAGTTATGTTTTAGATTCTTTAAC
ACTTTTAACAAAGAATTGCCTTTATAAATTGCTTTTTAATCAAATCCCTT
TAAGAGTAATTAAAGAACTTAGTTACAAAAATGACGTTATGAACTTTAAA
AAAACGTTAATAATATGTTGCATCACCTTCTTTTATAAAAAGTGCTAAGT
TTTAATGGGTAATTAACCTTTTTGTTTGGAAGTTTTTTCAAACTGACCGC
AAAGAATTGAACTATTTTAAATTTTGCGGAGAATTTTTCTAAAAAGATGT
GTCAAAAGTTATGACTGTTTTTTTAACCGAAATCCAGATGAAAAATTGAT
GAAAAACCACTATTTTGAAGATTTCGAGACAAAGAAGCATTTACAAAAAT
TTTGCGCAAAAATTTTTATTGTTCGGTAAAAGATACACCATCTACTGCGA
AAAATTTTTCAAAATGTTTTTTTCTCGCCGAAACTCTTCATTTTCTTCTT
CATCAAATTTTTTCAACGCAATTTTCAGATTCAGGAATAGTTTGTCTAAC
AGAAAATGTATAACATGCCATAGTTTTNTTGAATTTTCAGATTCAGGAAT
AGTTTGTCTAACAGAAAATGTATAACATGCCATAGTTTTGTTGGTTACAT
CAGTCAGAAAACTCATTTTAAACACGGCAATTATGAAAAATTCACTATGG
CCCTTAAGAATAACGGTCAGAATTTCTTAAAACGAAATTTGTTTTTCTTT
TTTCACTTTGGTTTCAAAACATCGCTAAAACAATAGGAAACTCGAAACAG
ATCAAACAAGCGTCGCCTCAGGTCGGATATACTCGTTACTGTCAGTAGCG
TGGTGGGTCGACTAAATTTTGCACAAACTGGGAAGGCAAATTTAGAAGAT
TTTGGTTTTTGGCGCCCCCCCCCCCATAAAAAAGTAAATATCTTTTAAAA
ATCACGCGAGCGAAGCTAGCACGAAAATGTTGTGGTTTTTCTCTCTTTTT
TGACCGAAAACTGCCATATCTAAGTTGTAAAAGGGGCGCTAAAATTAGTA
AACAAGAGGCGTCTTTAAAACTGTAATCTTATTGTTCACAAACTATAGTA
AACTTTTTTAGGGATCTAAAAGTGATACAAAGCTCTCTCTCCGTCTTAGG
ACTAAACTTTATTAGGGATCTGACACTGACACAATCCCCCTTTCGTTTTA
GGTGGCGTAAAAAGTGTTTGTGGGGGTTTTGAAATTAAAAATGAGTATAT
TTTACCGGAAGCAGATGGCATGAGTAAATTTCCCCTCACTTTATGTGGAA
ACCCTCAACCTAATCTAATGTATACTTGGAACGGAAAGACAAAGAAAGCA
GTTTGGAAGGAAGTTAATCCAGAAAAGAAAATGTACCAGTACCAGCTCGA
GTTTGAAAATGTAAACAGAAAACAATGTGGCTCAAAAATTAAATTCCAAG
CGACAGGGTTCAAGCCTTGGAAACACGAATCGAATCTCAAAGTATCATGT
AAGAACTATTAATAATATCGAAATACAAACTTATTTTACGATAAACGATA
TTTTACCTTTATAAAATCGCATACCAAGGAATTGACAGTTGCAATTTACT
AAGACTTTTCTAAAAGCTAGTTGTTTTACCAATTTCCCTTAAAGATCCTA
TGCGAAATCGAAGTTTGACGTTTCGTTTATTTCTCATTGCATATTTTGAG
CGAAAGAATCACATGTATCTATAGTCAATAATAACTTCAAAAAGACACGT
AAGAGGTCGAAATATCGTTAAAGAAAAATGTATAGTCAATAATAATATTT
CGTTCATTTCTCATAGACAAACCTAGGGTTGCTGGTATCAACGCTGTCAA
AGAAATGCGATTTAGCGGCCAAAACTGTACAGTTTTCAAAATGCCAACAC
CAGCATGTCAGGAAAAATACAATTTCTTTGGCTATGACAGCAGGGAAACT
GAAATATGGAAATCTTTGGAGTATGAGGGAAATGAGTTTGAAGATTGTAG
TGACAAAGACTTGTTCAAAGACATCAAATTTGTTAAAGTTCAAGCAATCA
GTTGGAACAATAAAGCCGGAGATATGTCTGATTTTGTGGAAGTTGAAGAA
GAATTAAGTAAGTATTAACAAGAGGCATTATGTTAAAAGGTGCAGTACAT
GTTTTTTATAAGAACATTATAAGAACAATGTTCTTTCTTTCACTATTTTT
CGAGTAATTTTGTTTCCTAAGAAGTTGGGTGTTTTAGAGTCTTCAAAGCC
TTAAAATGTTCTTACTCTTGTCTCCCGAATAGACGGGGGGTCTGAAAAAG
CAGGGGGTAGGAAAATTTTCTAAATTCTAATAAGCGGGGGGGTTGGAATA
AGAGGGGGGGGAGTAATTTGAAGACTTTTCAACAACAAAAAAGAGACTTT
AACAAATGAACACGTAAAATAAGAAGCAATACAAAAAGGGAAATTTTTAA
CAGATTTAAGGTCTATCTACACTGTAATAAAATATTGAATTATTCGAATT
TAATTAGCGGGGGGTCTTAATAAGAGCGGGGGGGGTTGGATTTTTTTCTT
TTAACAATTGGCGGGGGGACGTCTATTCGGGAGACAAGAGTAGCTGGTTA
TTAACATTTTGCTCACCGAAGCCTAATATAGTATGTTTTTATAAGAAAAC
GTGTAGTAGAGTGGTCGATCAAGATGTCAGTGTTTGATCCCCACTCGGTG
CCATGATTCAGTTAACAAGGGAATGTACCTTCGCCAAAGTTAACCGATGT
GGCGGGAATTTAATGGACAATTCAAGAAGCCTATCGATGAATATGAAATT
ACCCTCTCTTTTGTGTTGGTTGTTCTTGGGAATTGTTAACACAATAATTT
TGCGCTTTTTGTTTTCAGTTGAAAAGGAAATTCCGATTCGAAAGAGCAGC
AACACGACGTTGATCGTGACAATCGTGTGCATTGTCTTGATCGTTGTTGT
CATCTTCGTAATCTTCTTCGTATGCAAGAAATATAATCGTGAGTAGATAT
TTTTATTCGTAAATCGCATCGCTGGTTGATTTTATGAGCGTTTATCGTTT
TGCAGTACACTCTGTTCGCATTGTCATTTGTCGGAAAACTCTGCGATGAA
GTATGATTTATGAATAGCAACACTTCTCTCGTAGCTCCCCTCTCTTACCC
GTATTCCATCGCAGCGATCCTAAAAATCCTCAAAAAACCTCTAGGAATGT
GAAAGAATTTCGGCAAAAAGTGCATGTCAATTGCTAAAATTAGTTCCGCA
AAATGCGCTAATTTAGTTACCATCGCACCGCGAAAATAAGCTCCACGAAA
ATTAGTTCCTTTAAAATAGCCGTAGTCGGGTCTGTGTACAGACTTTTTCA
ATGAAAACTTTAGATATTTCATTTTCGATAAAGATTAAATCACCGAGCTC
CACTTTTTGGATTATAGTAAAGGATAGCACACGAAGGGAAGGTTACCTTA
TCGGGGAAAACTTCGTCGGGGAAAATTTTCGTCAGGGAAAAATATTCGTC
ACTTGGCCAAAATTTCGTCATTTTTCCCCGACGAAGTTTTCCTCGATAAG
GTATCAGGTTCAATTACTCGGCAACCATTCAATTTATGCAAATAAATGAA
CAGTGGGCTAATTTCGGTAAAAAGATAGTCGACTCTCTATAAATCGAACG
CGCTCAGATAACCTAAATTCTTCGAGTTATGGAACATACTCAAAAGGTTT
GGTTCGATGAGAGGGGTTATATAACTTCTCCCTTTTCAGGGGACATTAAA
GTCATGGAAACAAGACTTTTAGCAGGCTCTTTTAATACTAATTATATGGT
TGATTACATTCTCTTTTAATTCATGATATGCACCACTGCAATGTCTTCTG
ACATTACATCACGGAACCAATCGCTCATTGGTTGTAAGTGACGCAAAATC
AGTCAATACGTCACTTTCAACCAATCAGCTATCATGAATACATAATCACC
GTCCTTTTTCTTCTTTTTCAGAGAAAATGAACAAAACCAGAGCTGGTACC
AAAAGCACTGGAAGTAAACAGTTTAAAATTAAGGACCGGAAAACAAGTGG
ATCTTACTCTCTTAATACTAACACGTGAACCATTCTATCTGGTCTGTAAA
ATAAACGTTTAACACGAATCGGAAAACTAAATCGTTAACTTTAAAGTTAA
ATCCGAAAGACTTTTGGAAACATTGAAAAATGAACATGATAAAAAGACAT
GTTTCATGTTTTTGTTATGTCACATGCTAGGATAGCTTCCGCCATTATGG
AAGCAAACGTTCAAATCTGCAAAAGTGATCCGTTGCGTCACTAACCTTTA
TATATCCCTTGACCTAGCTATATCTGCCATCTTTGATCGAGGTTTTGCAA
CCATTGCAGCGTTAAAAATTAACGTCTAACGGCACTACGTCATCAAAAGT
TTTCGAGGGAAAGTATATCTAGCGCTTTTGATGAATTTAATCCTCTATTT
TGACCAGATCCGCCAAATTAAGTTCCCGCCAAAATTTCTTCCCTGCGTAA
ATAAAACGTTTGTTTGCATAATGGCGGTAGTGAGTATGTGATTTAATAAA
GCATGAAAAATCTCTATTCTCAAACTACTCGGTGTTCGCCAATTGAAGTT
ATTGTTCTCTATTGAAGGCTGCAGACTGCATTTGAATAACCGAAATATAT
GTTAATTGAATATTTTAAACTGGCATACCATTAACGTAAAATAAAATCAA
TGATCTGGAAATTCTAAACCTAAAAAATACTCTAGCAATGATATCAATTG
ACGATATCGGCTTAACGTGAAAACTCAGATTTGACTTCCGAAAATTCCCC
ACAATGCTTTGTGCGGAAAGAATTTCACCTTGAACTTTTTTCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010090XLOC_010090Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018006-exon-sc0000282-1575043694:173883..173944TCONS_00018006-exon-sc0000282-1575043694:173883..173944Clytia hemisphaericaexon
TCONS_00018006-exon-sc0000282-1575043694:172325..172678TCONS_00018006-exon-sc0000282-1575043694:172325..172678Clytia hemisphaericaexon
TCONS_00018006-exon-sc0000282-1575043694:170697..170993TCONS_00018006-exon-sc0000282-1575043694:170697..170993Clytia hemisphaericaexon
TCONS_00018006-exon-sc0000282-1575043694:170088..170378TCONS_00018006-exon-sc0000282-1575043694:170088..170378Clytia hemisphaericaexon
TCONS_00018006-exon-sc0000282-1575043694:169207..169326TCONS_00018006-exon-sc0000282-1575043694:169207..169326Clytia hemisphaericaexon
TCONS_00018006-exon-sc0000282-1575043694:167351..168223TCONS_00018006-exon-sc0000282-1575043694:167351..168223Clytia hemisphaericaexon
TCONS_00018006-exon-sc0000282-1510915933:173883..173944TCONS_00018006-exon-sc0000282-1510915933:173883..173944Clytia hemisphaericaexon
TCONS_00018006-exon-sc0000282-1510915933:172325..172678TCONS_00018006-exon-sc0000282-1510915933:172325..172678Clytia hemisphaericaexon
TCONS_00018006-exon-sc0000282-1510915933:170697..170993TCONS_00018006-exon-sc0000282-1510915933:170697..170993Clytia hemisphaericaexon
TCONS_00018006-exon-sc0000282-1510915933:170088..170378TCONS_00018006-exon-sc0000282-1510915933:170088..170378Clytia hemisphaericaexon
TCONS_00018006-exon-sc0000282-1510915933:169207..169326TCONS_00018006-exon-sc0000282-1510915933:169207..169326Clytia hemisphaericaexon
TCONS_00018006-exon-sc0000282-1510915933:167351..168223TCONS_00018006-exon-sc0000282-1510915933:167351..168223Clytia hemisphaericaexon
TCONS_00018006-exon-sc0000282-1491911889:173883..173944TCONS_00018006-exon-sc0000282-1491911889:173883..173944Clytia hemisphaericaexon
TCONS_00018006-exon-sc0000282-1491911889:172325..172678TCONS_00018006-exon-sc0000282-1491911889:172325..172678Clytia hemisphaericaexon
TCONS_00018006-exon-sc0000282-1491911889:170697..170993TCONS_00018006-exon-sc0000282-1491911889:170697..170993Clytia hemisphaericaexon
TCONS_00018006-exon-sc0000282-1491911889:170088..170378TCONS_00018006-exon-sc0000282-1491911889:170088..170378Clytia hemisphaericaexon
TCONS_00018006-exon-sc0000282-1491911889:169207..169326TCONS_00018006-exon-sc0000282-1491911889:169207..169326Clytia hemisphaericaexon
TCONS_00018006-exon-sc0000282-1491911889:167351..168223TCONS_00018006-exon-sc0000282-1491911889:167351..168223Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000282supercontigsc0000282:167351..173944 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0633174	0.0270402	0	0.0325539	0.0547456	0.135189	0.275897	0.328156	1.65747	0.542529	1.80836	1.67202	1.89761	2.3105	4.62786	5.05552	0.904065	0.933223	2.11249	3.07536	0.690955	0.368	0.348526	0.244987	0.631546	1.24839	2.71276	2.18469	1.20503	1.26229
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018006 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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