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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018189 ID=TCONS_00018189|Name=TCONS_00018189|organism=Clytia hemisphaerica|type=transcript|length=2513bpRun BLAST on NCBI protein sequence of TCONS_00018189-protein >TCONS_00018189-protein ID=TCONS_00018189-protein|Name=TCONS_00018189-protein|organism=Clytia hemisphaerica|type=polypeptide|length=694bp MSEIDEIDAVQESNSIKINEDETASTVIRAEISKHSNTDQNNEEQVDGPSRun BLAST on NCBI transcript from alignment at sc0000291:62939..73901+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018189 ID=TCONS_00018189|Name=TCONS_00018189|organism=Clytia hemisphaerica|type=transcript|length=10963bp|location=Sequence derived from alignment at sc0000291:62939..73901+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000291:62939..73901+ >TCONS_00018189 ID=TCONS_00018189|Name=TCONS_00018189|organism=Clytia hemisphaerica|type=CDS|length=29190bp|location=Sequence derived from alignment at sc0000291:62939..73901+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00018189 vs. Swiss-Prot (Human)
Match: IQUB (IQ and ubiquitin-like domain-containing protein OS=Homo sapiens GN=IQUB PE=1 SV=2) HSP 1 Score: 500.36 bits (1287), Expect = 5.824e-164 Identity = 268/540 (49.63%), Postives = 371/540 (68.70%), Query Frame = 3
Query: 648 SKLLKVVVSDD-DITKTINVRIIDKCPRKPFLGGFRHKLTGVEYLNASAQTFPKKVLASTVEKFNRDTQTVTTKNYGQQTFNETSTQMTKPGCYISDVKDVVKVPGPYVTAEEKEKMRLEKIIILQSYWRRWLSTNFVXXXXXXXXXXXXWEHKQXXXXXXXXXXXXXXXXXXXMKPRTKADFDLLYSALEKWRQEEIERINTNHSGPERKAALVGLLEQETYLIQSIERHRINADRNNEEAHILRTLEKAGSAKFWRAYDGQVTQMSTQHTIRAKELKDLYGSLQMDYLTTDERLDVLLSVKQTVAEHDCKLTQELISLIDREADLLGRKVKNSNLDGLRQRINTLFIQYCKTPMFNPEIARLLKVPQDVNKLRKDIYFCPSCNKYLPATEFPLASNSKITGRCKKCCALDNNSRLRHDFTKIRFILQNLRQTEEAFNDNSKIAFIIQDADLRYLIENIWNSQSALSGVEDLYELVLIRWNRHEPWSPWNCVLFTKDEASAHMKLENVSEAYGRIFIGKVRNKHLLAKQHFAKLANIES 2264
S+++ V V D + + V I+ KPFLGGFRHK+TGVEY NA QT PK++ + F RDTQTV K QQT N TSTQMT G Y+S++ D + PG Y +A E RL+ +I++Q+Y+R+W + FV+ L+R K RL+WE +Q ++ E+ E ++ ++ RR P+T DF+ LY+ALE WRQEE+ RIN + +G ERKAAL LLE+ET +I SI RHR A N+EA I L+K + K WR +G+ +M TQ TIRA+EL+++Y + + ++ DERLDVLL++K TV EH+CKLTQE++ LIDRE DL+ R VK+ NL+GLR+RI TLF Y KTP+FNPE+A+ LKVPQD K K IYFC SC YLP+TEF ++S S+ RC+ C L N ++ R F K + +LQ L TE + D+SKIAF++Q D++YL ENIW SQS LS ++L +LV++RWN+ WSPWNC+L TKDEA+AH+KL ++ E Y R FI K+++KH+LAK +F+++ + S
Sbjct: 222 SQIITVTVQTGLDQYQQVPVEIVKSDFHKPFLGGFRHKVTGVEYHNAGTQTVPKRI-PERLSIFCRDTQTVFQKKNLQQTTNTTSTQMTNIGVYVSNMTDKLVTPGKYFSAAEYHAQRLKAVIVIQTYYRQWHAKIFVENLRRQKSLRLEWETQQELRKIREKEEWIKLDYHRRHNPKTNEDFEFLYNALEFWRQEELTRINQSFTGAERKAALCELLEKETQIIASIGRHRYIAYMANQEAAIQAFLDKCSAPKIWRTPNGKTIEMDTQFTIRARELQNIYKCIMLKNISQDERLDVLLTLKHTVKEHECKLTQEILELIDREVDLMMRGVKHHNLEGLRKRIATLFFHYIKTPLFNPEVAKYLKVPQDPLKFYKKIYFCHSCQLYLPSTEFSVSSTSRRIYRCRNCINLQNEAQKRESFLKYKCLLQQLYYTEADYEDDSKIAFLMQLQDIQYLTENIWASQSVLSACDNLSDLVMVRWNKSLEWSPWNCILLTKDEAAAHLKLTSIEEGYERSFIHKIKHKHILAKNYFSQVPVLAS 760 The following BLAST results are available for this feature:
BLAST of TCONS_00018189 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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