TCONS_00018683 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018683
Unique NameTCONS_00018683
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1535

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018683 ID=TCONS_00018683|Name=TCONS_00018683|organism=Clytia hemisphaerica|type=transcript|length=1535bp
CTGAACTGGTTTTAGAAGCTTATTTAGGAGATCATGGAATTTAAATAATT
TGCAATTTAGCAATCTTGAAAGCATGCATTAAAGGGACCTATTATGGTAT
TATCAACAATCAAAGAAGTAGGAAATTTAGTTTTAAAGAAATTAAGTAGG
AAGTTTTTTGGCattaaatctttgaaaaaaattgaccaattatCAAAATA
GGAACATGCAGTGATTTCATAAGTATTGTTGAAAAGTGGGAAGTGGGAAA
CGTACCAAAATAGGTATAAAGAGGCCTGAAAGATCAGTAAGTGTTCAAAG
CACATCATTAGAAGTTCGAAGATTGTACTTAAAAAAGAAGATTGGTAACT
ACTTTAACTGTACGAGGATATATTGGAAGTTTCGTACACTTTGAAGGACC
TTTTGAAGATATGGCAATCATTTCATTGGCGCTTGTAGTGTTTCTCACAT
ATGCTTCGGCATCTGATTCGGAAGGCATTGAACTTGTGCGAATGGTGAAT
TGTACAGATGAATTCGCCTATCATTTCTCTGACGTTAAAAAGAGTTGGAG
AGAAGCCgaagatttttgtcaaaaatacgGAGGTCATTTGACGAGTATAA
AGGATGCACGTGAAAATGATTTTATCGATGCTTATGTTGTTGGCAGGAAT
TTGCAGAATCCATACATCGGTGCAGTAAGACGAGGGGTAGGAGCTGCAAG
AGTTTGGAAATGGCTAGACAATACAACCTGGACCTGGCAGCCATCTATTT
GGTATGGGTGGGAGGATGGTAGTAAAACAACTGCTGATATCTATGGGTAT
TATTTTGGAACCAAAGACAAAAAATGGAAATGGACAGCTCAACCACTGGA
TAAAAGTCCTTTCATCTGCAAAGTTCCATCATCTGGCATAGATGtgcaaa
aagaaaaggaaaaaggcgtTGAGTTCGTGAAAAAAACGGACTGTTCGAAA
GATATAGCTTACCATTTCTCAACCGTTAAAATGAATTGGACGAATGCAGA
AAGTTTTTGTCAAGAACATGGAGGTCATTTGACAAGTATCTCAAGTGAAG
AAGAGAAAGTCTTTATTGGAGCCAACGTTGAAAGCAGgaACCTCTACAGA
CCATACATTGGAGCATTAAAACAAGGAATTGGTGCAGCACGAAAATGGCA
ATGGATCGACAAAACATTTTGGACTTGGGGACCATCTGTCTTTTGGGGAC
GAAATATTGGGAGCGGAGCCAATCAGGATAACTATGGTTTTATCTATCGT
GAATCTAAATTATTGAGTTGGATGACGCAACCAAACCTTGAGCGTGCTTT
CGTGTGCAAAGTACGTACCGATGAAACGACGTCGTCTGGGTTTCTTCTAC
AAACGGACAAAATGTTGGTATTGCTTGTTTTGACCATTTGTCTTACTTTG
TTTACTTCGTAGACCTTTGTTTAGGTCAGCCTAATTTTTCTTAACGACGT
ACCGGCTGCTTTTGAAACTGACTCTATTTGTAGATCTTAAATTGTAAAAT
TATagttaaataattttttgttgaaaatatttatc
Run BLAST on NCBI

transcript from alignment at sc0000304:190773..195505-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018683 ID=TCONS_00018683|Name=TCONS_00018683|organism=Clytia hemisphaerica|type=transcript|length=4733bp|location=Sequence derived from alignment at sc0000304:190773..195505- (Clytia hemisphaerica)
CTGAACTGGTTTTAGAAGCTTATTTAGGAGATCATGGAATTTAAATAATT
TGCAATTTAGCAATCTTGAAAGCATGCATTAAAGGGACCTATTATGGTAT
TATCAACAATCAAAGAAGTAGGAAATTTAGTTTTAAAGAAATTAAGTAGG
AAGTTTTTTGGCATTAAATCTTTGAAAAAAATTGACCAATTATCAAAATA
GGAACATGCAGTGATTTCATAAGTATTGTTGAAAAGTGGGAAGTGGGAAA
CGTACCAAAATAGGTATAAAGAGGCCTGAAAGATCAGTAAGTGTTCAAAG
CACATCATTAGAAGTTCGAAGATTGTACTTAAAAAAGAAGATTGGTAACT
ACTTTAACTGTACGAGGATATATTGGAAGTTTCGTACACTTTGAAGGACC
TTTTGAAGATATGGCAATCATTTCATTGGCGCTTGTAGTGTTTCTCACAT
ATGCTTCGGCATCTGATTCGGAAGGTGAGAAAACCATTCCACCTCCAGGC
TAAGCTTTTTGCTTTAGAACTACTCTATTTCTAAATGAAAGAAGCAAGGA
AAGACACTGTATAAGTAAGCAAGTGTGTGACCGCAGTTGGAGGTGACCCG
AAGGCTCCTCTTTCGATAGCTATCTACCCGAAGGTAGGGGAGGGCGCCAC
TCCTTTCCCTGGATTTCTCCACTTACCCTTGATCCTTCTCTTTAATTCCT
GAGCATCAAGCAGAGAGGCATCGAGTACCATTTTGGGAATCTTTGGTAGG
ACCTGGCTGGGGGTTGAACGCACAACCTTGCGCACCGTAGCCGGATGCTC
TACCACTACACTACGGTCGCTAAAATGATTCAAAAACATCTATGTTTGAA
GTATTCAATATTGAAATTAAAGAATATTTAAACCAAAAAATATTACTGGA
ACCTTCCAATAATCAATAGGGCTCAAATTTTGAGAAATTTAAGAAGAGTT
ATAAGGTTTTAAAAATGGAATCCAATCAAAACTCCATGGACCTTTTCTTT
TCAGGCATTGAACTTGTGCGAATGGTGAATTGTACAGATGAATTCGCCTA
TCATTTCTCTGACGTTAAAAAGAGTTGGAGAGAAGCCGAAGATTTTTGTC
AAAAATACGGAGGTCATTTGACGAGTATAAAGGATGCACGTGAAAATGAT
TTTATCGATGCTTATGTTGTTGGCAGGTATGTACAAGTTTCTTAATCAAC
ATTGAACCTGAGCTTAACAACTACTGACCAAGGATTTATTATACACTGGA
TATACAAGTACCTGATTTTTGCTGATTTCTCGTGTACTAGCTATGTCCGC
AGTAATGATATTATTGTTCANACACTAGATATACAAGTAACAGATTTTTG
CCGATTTCTCATGTTCTAAGCCATGTCCACAGTAATGATGTTATTGTTCA
CCCTCCTTCCCTCATTAAATGATTTTTCGAAGCATTTTTATTGCATTTCT
TATCGAAAATCACTCATCCAATTCCCAAAAGAGACTTAAAATTTTCCAGT
GAGAGTCAAATTCTTCAAGTTAATTGCTAATTATAAGTCGTTATGATGTT
TCAAGTTGTGAGAAAGATGCAAAAGATGTCTTATGTGTAAGAAATTGAAT
GCTGACACCGGAAATTTTCAAACTTCAACCACAAAAAAACCACCTTGCCA
CCGCGTGCCTCCAAAAGATTTTCATACCACAGTGACACCAAGACACTCAA
GTCTAATGTTTGTTACTTTTATATCTCGTGGTAACAGTTTTGGAAAGATA
TTCCCAATTGAAAATTTCGTGTTACTATAAGCATTTTGTTAGATTTTTCT
TGTCTAATGATGTTTTTCTCACATTAGATCTCACAAATGTATCCGGCTTG
GTATTCTAGCCTTACTTTCAAAATTTTTTCCCTGCAAAGGTACGAAAAGA
AAACGCTAGGGAACTTTTTTAAAATGAGATTAATAAGCATTTTTAAAAAT
CAGATACTTTCGAGCCGCCGTGACAGTTGTCCTTTGTGGACAAAGCTAGA
ACAACAATTGTTTTCTGAAACAAAGGAAATACAATGGTCGCTCTCCACCG
TTTTATGAGTCATTTATCCAAGAGTGAACAATAATATCATTACTGCGGAC
ATAGCTAGTACACGAGAAATCGGCAAAAATCTGCTACTTGTATATCCAGT
GTATAATAAATCCTTGGTTATTCTAATCACGCTAACATGGTTTCCACATT
TTAGTAAAAAGAGTGCACACTTAAAGCGAAAGTTCTTGGCCTAACAAAAG
TTTTGATTTATTTCGCAGGAATTTGCAGAATCCATACATCGGTGCAGTAA
GACGAGGGGTAGGAGCTGCAAGAGTTTGGAAATGGCTAGACAATACAACC
TGGACCTGGCAGCCATCTATTTGGTATGGGTGGGAGGATGGTAGTAAAAC
AACTGCTGATATCTATGGGTATTATTTTGGAACCAAAGACAAAAAATGGA
AATGGACAGCTCAACCACTGGATAAAAGTCCTTTCATCTGCAAAGGTAAA
ACTCCATTGTTACAAGGTCCCATTCTCTCCGATCTGCAATTTCTCAAGCA
TTAATTCACATGACTAATTTCAAGCTACCAGACGCACTTTTTGAGTTTCG
GTATATTTCATATCCTTTGTGTCGTACTTGCAGTATTTCCACTGGGAATT
AAGATTTCTGCAAAATTCGAGTGGCGCCATCCTGGTTTTATCTTATTACA
AAATGGCTGTACCACAGCACTTTTCCGAATCTTTTGTCATTTTGACGCGT
TTGAATGCTGAGGGGACTCTAAGAAAGAAAGCCGAAAGTACGGTATTGCA
AAGGAGATAATCATTGTATACAAAAATACCCGTGACCAAGCTTGTAACTA
ACATTTTTCAATTACTTTTACTTCGAAGTTCCATCATCTGGCATAGATGT
GCAAAAAGAAAAGGAAAAAGGTAAGATTTTCTTTATAAAAAAAATAATTT
TAAAAATGGCCAAATAATACATTTTGGGGGAGGGGATAGAGTCAAAATCA
AGGATTACAAAAAATAAACAGAAGTTCAAACATTTATCCCAAAAAAGATT
AAATTTTAGGAAAAGAGTCTGGTAAGGGTCCCAAAATTCACAAAATTTCG
GGTTTTTTCATGTCGATTACAGTATAGACCCTATAATTTCATACTTTCAA
AAATCGCGCGGGCACTCCTCGTCATTTTGCATGCAAACCTAGTACCCTCC
CTCCTGGGAAACAGAAAATCGGACAAAATATTTCTTAATTTTTCAGGCGT
TGAGTTCGTGAAAAAAACGGACTGTTCGAAAGATATAGCTTACCATTTCT
CAACCGTTAAAATGAATTGGACGAATGCAGAAAGTTTTTGTCAAGAACAT
GGAGGTCATTTGACAAGTATCTCAAGTGAAGAAGAGAAAGTCTTTATTGG
AGCCAACGTTGAAAGCAGGTATGCATAACTCCGGGGATTTCTTAACGTTA
ATTGTAAGAGTCGAAATGAGAGAAAGTGCTGAATGTGGGTGTAATAAGTG
AGAGCTGAGTTGAGTGGTTTTGGGCACAAAGTCTAACAATTTATTCTCCT
AAAATCGTCAAAAAAAATTCAGAAATTAAAAAAATAAGTACTGTTTAACT
GTGGATTGGAAATGTTTTGGCTGAACAACATTACAATTACTGTGTAACTT
TATAGTCGGAATGATGCTAAGTATAGTGACAAAAGATAGTCTGTTGCTTA
AATTATTTTGAAGATTTTTGCATTTGAACTCATCTGAAAAAAAAATTTCA
ATAGTTTTCAGAAAGACAAAGGTTCCTACTTTACTTTACTTTTAATTCAT
TTTTTTATAAAGGAACCTCTACAGACCATACATTGGAGCATTAAAACAAG
GAATTGGTGCAGCACGAAAATGGCAATGGATCGACAAAACATTTTGGACT
TGGGGACCATCTGTCTTTTGGGGACGAAATATTGGGAGCGGAGCCAATCA
GGATAACTATGGTTTTATCTATCGTGAATCTAAATTATTGAGTTGGATGA
CGCAACCAAACCTTGAGCGTGCTTTCGTGTGCAAAGGTAAGATTTCAAAA
AAGAATTTTAGACAATCAAACACTTTGCTAGGGTCAGTTATAGTGATTTG
ATTCCACCCTTAAGGATAAATTATACCCCAAAACAGGAAGTTTCTACAAA
TCACTCGATTCCAAGAGATAGCTACCTTGAAAAGTCAGTTATCATTTATT
GGTTGATGAACGGCCTAACCCAGCTGGTACACAGCGTTGTTTTAACGTTT
TTCTAGCGTTATATGGACATTTTGAACGTTAGAAAAACGTCGAAACAACG
TTGTGTGCCAGCTGGGAAAGCACACTACTTAAGAATCTACTGGTCTCAGA
TCCAATCGTTAATTATTTGCATTCCTTAACTAATTTTGGTGCTTCCCACT
TTAATATTTTTAAATTATTATTTTTCCACAGTACGTACCGATGAANATTT
CTTAACTAATTTCGGTGCTTCCCACTTTAACATTTTTAAACTATCATTCT
TTTCCACAGTACGTACCGATGAAACGACGTCGTCTGGGTTTCTTCTACAA
ACGGACAAAATGTTGGTATTGCTTGTTTTGACCATTTGTCTTACTTTGTT
TACTTCGTAGACCTTTGTTTAGGTCAGCCTAATTTTTCTTAACGACGTAC
CGGCTGCTTTTGAAACTGACTCTATTTGTAGATCTTAAATTGTAAAATTA
TAGTTAAATAATTTTTTGTTGAAAATATTTATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010450XLOC_010450Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018683-exon-sc0000304-1575043694:195032..195505TCONS_00018683-exon-sc0000304-1575043694:195032..195505Clytia hemisphaericaexon
TCONS_00018683-exon-sc0000304-1575043694:194330..194501TCONS_00018683-exon-sc0000304-1575043694:194330..194501Clytia hemisphaericaexon
TCONS_00018683-exon-sc0000304-1575043694:193011..193237TCONS_00018683-exon-sc0000304-1575043694:193011..193237Clytia hemisphaericaexon
TCONS_00018683-exon-sc0000304-1575043694:192586..192627TCONS_00018683-exon-sc0000304-1575043694:192586..192627Clytia hemisphaericaexon
TCONS_00018683-exon-sc0000304-1575043694:192088..192259TCONS_00018683-exon-sc0000304-1575043694:192088..192259Clytia hemisphaericaexon
TCONS_00018683-exon-sc0000304-1575043694:191470..191693TCONS_00018683-exon-sc0000304-1575043694:191470..191693Clytia hemisphaericaexon
TCONS_00018683-exon-sc0000304-1575043694:190773..190996TCONS_00018683-exon-sc0000304-1575043694:190773..190996Clytia hemisphaericaexon
TCONS_00018683-exon-sc0000304-1510915933:195032..195505TCONS_00018683-exon-sc0000304-1510915933:195032..195505Clytia hemisphaericaexon
TCONS_00018683-exon-sc0000304-1510915933:194330..194501TCONS_00018683-exon-sc0000304-1510915933:194330..194501Clytia hemisphaericaexon
TCONS_00018683-exon-sc0000304-1510915933:193011..193237TCONS_00018683-exon-sc0000304-1510915933:193011..193237Clytia hemisphaericaexon
TCONS_00018683-exon-sc0000304-1510915933:192586..192627TCONS_00018683-exon-sc0000304-1510915933:192586..192627Clytia hemisphaericaexon
TCONS_00018683-exon-sc0000304-1510915933:192088..192259TCONS_00018683-exon-sc0000304-1510915933:192088..192259Clytia hemisphaericaexon
TCONS_00018683-exon-sc0000304-1510915933:191470..191693TCONS_00018683-exon-sc0000304-1510915933:191470..191693Clytia hemisphaericaexon
TCONS_00018683-exon-sc0000304-1510915933:190773..190996TCONS_00018683-exon-sc0000304-1510915933:190773..190996Clytia hemisphaericaexon
TCONS_00018683-exon-sc0000304-1491911889:195032..195505TCONS_00018683-exon-sc0000304-1491911889:195032..195505Clytia hemisphaericaexon
TCONS_00018683-exon-sc0000304-1491911889:194330..194501TCONS_00018683-exon-sc0000304-1491911889:194330..194501Clytia hemisphaericaexon
TCONS_00018683-exon-sc0000304-1491911889:193011..193237TCONS_00018683-exon-sc0000304-1491911889:193011..193237Clytia hemisphaericaexon
TCONS_00018683-exon-sc0000304-1491911889:192586..192627TCONS_00018683-exon-sc0000304-1491911889:192586..192627Clytia hemisphaericaexon
TCONS_00018683-exon-sc0000304-1491911889:192088..192259TCONS_00018683-exon-sc0000304-1491911889:192088..192259Clytia hemisphaericaexon
TCONS_00018683-exon-sc0000304-1491911889:191470..191693TCONS_00018683-exon-sc0000304-1491911889:191470..191693Clytia hemisphaericaexon
TCONS_00018683-exon-sc0000304-1491911889:190773..190996TCONS_00018683-exon-sc0000304-1491911889:190773..190996Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000304supercontigsc0000304:190773..195505 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0605878	0.0889136	0	0	0.0845084	0	0.0336802	0.0558545	0.0640885	0	11.3635	11.5535	2.4542	2.38926	0.529446	0.954462	29.7828	32.3503	0.967792	1.31693	0.578361	0.284701	0.873456	0.476444	0.143865	0.169056	0	0.0995371
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018683 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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