TCONS_00018983 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018983
Unique NameTCONS_00018983
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length956

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018983 ID=TCONS_00018983|Name=TCONS_00018983|organism=Clytia hemisphaerica|type=transcript|length=956bp
CAACAACTCAATAAAGAAGACTTCATCACAAACAAAGATGGCAAGAATAA
TGATGGCTGTGACCGTGGTTTTATTTTTGCTCTTTTGTAATAAATTCATT
GTTGGTGACAAAGCAGATAAGGACGAATTCAAGCAAGATGACATTGTGAT
GAAGGACAATTCATCCCAAGGTTCAAAGccttcaaCTTGTGGAGCTTGCC
ATGGAGGCCGTGACGGTAGAGACGGTCACCCAGGACACCCTGGCCGCGAC
GGCAGAGATGGTTGCCCTGGCGCTTTGGGGCCCAAAGGACAAGCTGGAGT
AAATGGATTGCCAGGAACAGACGGTAAAAACGGAATTAATGGAAAGCCAG
GGAAAAACGGAAGCCAGGGTTTACCTGGAAAAGATGGCGCAGATGGAAAA
CCAGGGAAGAATGGAAAAAATGGTATCAATGGAAAAGACAGAACCGCAAG
AAATATCAAACAATGCGCTTGGAAAAGACTCAGCACAAATAATTATGACA
CCACTGAGATCGGATTGATCAAAGAATGCAGTATCCAAAAGAGAGTGGCT
TCTTCGGAGCTTTTGGTCACAGTATCCACAACAATTCGCGTGTATTCTTG
CAAAAATTGTTGCAAGCGCTGGTTCGTCACCTTTGATGGAGACGAATGCG
CCCCGGTTCCAATCGACCACGCACTTTACAGATATGAAGCCAGCAGAGAT
TTCATTCCTCTCACATTGAAAGGCCTTTGTAAAGTCAACAAAAGTGGTTT
GGTCAGAGTTGGACTGAATATTGAAGATTGTGGAAGCAAGACTGGTAGCG
TTGATGGTGACACTGGCTACTATAGGTCAACATTCCGCATTTTGATTGAA
GAAGTTGAGCCacaatcttaaaattttaaactggggcgaaaacgaaaaaa
agtttataagatgaaaattttattcccagtcattaaaattattatttgga
atTATT
Run BLAST on NCBI

protein sequence of TCONS_00018983-protein

>TCONS_00018983-protein ID=TCONS_00018983-protein|Name=TCONS_00018983-protein|organism=Clytia hemisphaerica|type=polypeptide|length=289bp
NNSIKKTSSQTKMARIMMAVTVVLFLLFCNKFIVGDKADKDEFKQDDIVM
KDNSSQGSKPSTCGACHGGRDGRDGHPGHPGRDGRDGCPGALGPKGQAGV
NGLPGTDGKNGINGKPGKNGSQGLPGKDGADGKPGKNGKNGINGKDRTAR
NIKQCAWKRLSTNNYDTTEIGLIKECSIQKRVASSELLVTVSTTIRVYSC
KNCCKRWFVTFDGDECAPVPIDHALYRYEASRDFIPLTLKGLCKVNKSGL
VRVGLNIEDCGSKTGSVDGDTGYYRSTFRILIEEVEPQS
Run BLAST on NCBI

transcript from alignment at sc0000314:16209..17997-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018983 ID=TCONS_00018983|Name=TCONS_00018983|organism=Clytia hemisphaerica|type=transcript|length=1789bp|location=Sequence derived from alignment at sc0000314:16209..17997- (Clytia hemisphaerica)
CAACAACTCAATAAAGAAGACTTCATCACAAACAAAGATGGCAAGAATAA
TGATGGCTGTGACCGTGGTTTTATTTTTGCTCTTTTGTAATAAATTCATT
GTTGGTGACAAAGCAGATAAGGACGAATTCAAGCAAGATGACATTGTGAT
GAAGGACAATTCATCCCAAGGTTCAAAGGTACAAGAACAAAAATACTTTG
TCGGGCTTTATTGCTTATGGTCTCGAAGAAACAAGTTGTACATATAAGTA
TCAATACGGCTATACTTTCTAAATCTCTCCAATATACAAATCTTGTAATT
CGAATTTTCTAATTATATTTTTAAAGCCTTCAACTTGTGGAGCTTGCCAT
GGAGGCCGTGACGGTAGAGACGGTCACCCAGGACACCCTGGCCGCGACGG
CAGAGATGGTTGCCCTGGCGCTTTGGGGCCCAAAGGACAAGGTGAGTCTA
GAACAGTATCAGTGTAAAGTGTAGGTTTGAAGAAGAAGCGAAATAAGAAG
GGGAAGCTAAAATCAAAGTCATAATATTTGAGAAAAAATGGGAAATTCCC
ACGAAATCTTCCAACCACAAATAATTTGGAAGCGCTCTAAATTAGCTTTC
TCGCCCGAACTTTCAATTGCTGAAAACGAGGAATTAACCAAAATTCACAA
TATATTTTGACCAAGATTGTACGGGAAACATTTTACCTTCTGTTAAATTT
TACAGAATAAACCAAATTTCACCGGTAAAAACGCTTGAGAAAAAAATATT
GTCTAAAACAGACGAAACAGTACAGAATCACCTCAGTCAAATTATTCATC
TCCATTTTATAAATATAGCTGGAGTAAATGGATTGCCAGGAACAGACGGT
AAAAACGGAATTAATGGAAAGCCAGGGAAAAACGGAAGCCAGGGTTTACC
TGGAAAAGATGGCGCAGATGGAAAACCAGGGAAGAATGGAAAAAATGGTA
TCAATGGAAAAGACAGAACCGCAAGAAATATCAAACAATGCGCTTGGAAA
AGACTCAGCACAAATAATTATGACACCACTGAGATCGGATTGATCAAAGT
AATGAGTAGTACCTTAAAAGTGGATTCAATTTAACGATTTTGAATATGAT
TTCACCTCGTTTGATTGATTAGTAAAATGTTATCAATTATTTTCATCATT
TTTTCGAGAGCTTTGCACACCACCAGGGTTTGCTCTGGACCTACTAGGGT
CCTTTTAAATCGTCTTTGAGAGTCACAGCTTTATCAATGCAAAGCTTCAC
TGAGTAGATGCCCTTTAAGGCATATTAGAAAGTCAATCTAAATTTACTAA
AACGGCCCCATTGGAAAATCCCTGATCTTATCCATTTTGAACGTTCTTTT
TCTTAGGAATGCAGTATCCAAAAGAGAGTGGCTTCTTCGGAGCTTTTGGT
CACAGTATCCACAACAATTCGCGTGTATTCTTGCAAAAATTGTTGCAAGC
GCTGGTTCGTCACCTTTGATGGAGACGAATGCGCCCCGGTTCCAATCGAC
CACGCACTTTACAGATATGAAGCCAGCAGAGATTTCATTCCTCTCACATT
GAAAGGCCTTTGTAAAGTCAACAAAAGTGGTTTGGTCAGAGTTGGACTGA
ATATTGAAGATTGTGGAAGCAAGACTGGTAGCGTTGATGGTGACACTGGC
TACTATAGGTCAACATTCCGCATTTTGATTGAAGAAGTTGAGCCACAATC
TTAAAATTTTAAACTGGGGCGAAAACGAAAAAAAGTTTATAAGATGAAAA
TTTTATTCCCAGTCATTAAAATTATTATTTGGAATTATT

Coding sequence (CDS) from alignment at sc0000314:16209..17997-

>TCONS_00018983 ID=TCONS_00018983|Name=TCONS_00018983|organism=Clytia hemisphaerica|type=CDS|length=3480bp|location=Sequence derived from alignment at sc0000314:16209..17997- (Clytia hemisphaerica)
GAATGCAGTATCCAAAAGAGAGTGGCTTCTTCGGAGCTTTTGGTCACAGT
ATCCACAACAATTCGCGTGTATTCTTGCAAAAATTGTTGCAAGCGCTGGT
TCGTCACCTTTGATGGAGACGAATGCGCCCCGGTTCCAATCGACCACGCA
CTTTACAGATATGAAGCCAGCAGAGATTTCATTCCTCTCACATTGAAAGG
CCTTTGTAAAGTCAACAAAAGTGGTTTGGTCAGAGTTGGACTGAATATTG
AAGATTGTGGAAGCAAGACTGGTAGCGTTGATGGTGACACTGGCTACTAT
AGGTCAACATTCCGCATTTTGATTGAAGAAGTTGAGCCACAATCTTAACT
GGAGTAAATGGATTGCCAGGAACAGACGGTAAAAACGGAATTAATGGAAA
GCCAGGGAAAAACGGAAGCCAGGGTTTACCTGGAAAAGATGGCGCAGATG
GAAAACCAGGGAAGAATGGAAAAAATGGTATCAATGGAAAAGACAGAACC
GCAAGAAATATCAAACAATGCGCTTGGAAAAGACTCAGCACAAATAATTA
TGACACCACTGAGATCGGATTGATCAAACCTTCAACTTGTGGAGCTTGCC
ATGGAGGCCGTGACGGTAGAGACGGTCACCCAGGACACCCTGGCCGCGAC
GGCAGAGATGGTTGCCCTGGCGCTTTGGGGCCCAAAGGACAAGAACAACT
CAATAAAGAAGACTTCATCACAAACAAAGATGGCAAGAATAATGATGGCT
GTGACCGTGGTTTTATTTTTGCTCTTTTGTAATAAATTCATTGTTGGTGA
CAAAGCAGATAAGGACGAATTCAAGCAAGATGACATTGTGATGAAGGACA
ATTCATCCCAAGGTTCAAAGGAATGCAGTATCCAAAAGAGAGTGGCTTCT
TCGGAGCTTTTGGTCACAGTATCCACAACAATTCGCGTGTATTCTTGCAA
AAATTGTTGCAAGCGCTGGTTCGTCACCTTTGATGGAGACGAATGCGCCC
CGGTTCCAATCGACCACGCACTTTACAGATATGAAGCCAGCAGAGATTTC
ATTCCTCTCACATTGAAAGGCCTTTGTAAAGTCAACAAAAGTGGTTTGGT
CAGAGTTGGACTGAATATTGAAGATTGTGGAAGCAAGACTGGTAGCGTTG
ATGGTGACACTGGCTACTATAGGTCAACATTCCGCATTTTGATTGAAGAA
GTTGAGCCACAATCTTAACTGGAGTAAATGGATTGCCAGGAACAGACGGT
AAAAACGGAATTAATGGAAAGCCAGGGAAAAACGGAAGCCAGGGTTTACC
TGGAAAAGATGGCGCAGATGGAAAACCAGGGAAGAATGGAAAAAATGGTA
TCAATGGAAAAGACAGAACCGCAAGAAATATCAAACAATGCGCTTGGAAA
AGACTCAGCACAAATAATTATGACACCACTGAGATCGGATTGATCAAACC
TTCAACTTGTGGAGCTTGCCATGGAGGCCGTGACGGTAGAGACGGTCACC
CAGGACACCCTGGCCGCGACGGCAGAGATGGTTGCCCTGGCGCTTTGGGG
CCCAAAGGACAAGAACAACTCAATAAAGAAGACTTCATCACAAACAAAGA
TGGCAAGAATAATGATGGCTGTGACCGTGGTTTTATTTTTGCTCTTTTGT
AATAAATTCATTGTTGGTGACAAAGCAGATAAGGACGAATTCAAGCAAGA
TGACATTGTGATGAAGGACAATTCATCCCAAGGTTCAAAGGAATGCAGTA
TCCAAAAGAGAGTGGCTTCTTCGGAGCTTTTGGTCACAGTATCCACAACA
ATTCGCGTGTATTCTTGCAAAAATTGTTGCAAGCGCTGGTTCGTCACCTT
TGATGGAGACGAATGCGCCCCGGTTCCAATCGACCACGCACTTTACAGAT
ATGAAGCCAGCAGAGATTTCATTCCTCTCACATTGAAAGGCCTTTGTAAA
GTCAACAAAAGTGGTTTGGTCAGAGTTGGACTGAATATTGAAGATTGTGG
AAGCAAGACTGGTAGCGTTGATGGTGACACTGGCTACTATAGGTCAACAT
TCCGCATTTTGATTGAAGAAGTTGAGCCACAATCTTAACTGGAGTAAATG
GATTGCCAGGAACAGACGGTAAAAACGGAATTAATGGAAAGCCAGGGAAA
AACGGAAGCCAGGGTTTACCTGGAAAAGATGGCGCAGATGGAAAACCAGG
GAAGAATGGAAAAAATGGTATCAATGGAAAAGACAGAACCGCAAGAAATA
TCAAACAATGCGCTTGGAAAAGACTCAGCACAAATAATTATGACACCACT
GAGATCGGATTGATCAAACCTTCAACTTGTGGAGCTTGCCATGGAGGCCG
TGACGGTAGAGACGGTCACCCAGGACACCCTGGCCGCGACGGCAGAGATG
GTTGCCCTGGCGCTTTGGGGCCCAAAGGACAAGAACAACTCAATAAAGAA
GACTTCATCACAAACAAAGATGGCAAGAATAATGATGGCTGTGACCGTGG
TTTTATTTTTGCTCTTTTGTAATAAATTCATTGTTGGTGACAAAGCAGAT
AAGGACGAATTCAAGCAAGATGACATTGTGATGAAGGACAATTCATCCCA
AGGTTCAAAGGAATGCAGTATCCAAAAGAGAGTGGCTTCTTCGGAGCTTT
TGGTCACAGTATCCACAACAATTCGCGTGTATTCTTGCAAAAATTGTTGC
AAGCGCTGGTTCGTCACCTTTGATGGAGACGAATGCGCCCCGGTTCCAAT
CGACCACGCACTTTACAGATATGAAGCCAGCAGAGATTTCATTCCTCTCA
CATTGAAAGGCCTTTGTAAAGTCAACAAAAGTGGTTTGGTCAGAGTTGGA
CTGAATATTGAAGATTGTGGAAGCAAGACTGGTAGCGTTGATGGTGACAC
TGGCTACTATAGGTCAACATTCCGCATTTTGATTGAAGAAGTTGAGCCAC
AATCTTAACTGGAGTAAATGGATTGCCAGGAACAGACGGTAAAAACGGAA
TTAATGGAAAGCCAGGGAAAAACGGAAGCCAGGGTTTACCTGGAAAAGAT
GGCGCAGATGGAAAACCAGGGAAGAATGGAAAAAATGGTATCAATGGAAA
AGACAGAACCGCAAGAAATATCAAACAATGCGCTTGGAAAAGACTCAGCA
CAAATAATTATGACACCACTGAGATCGGATTGATCAAACCTTCAACTTGT
GGAGCTTGCCATGGAGGCCGTGACGGTAGAGACGGTCACCCAGGACACCC
TGGCCGCGACGGCAGAGATGGTTGCCCTGGCGCTTTGGGGCCCAAAGGAC
AAGAACAACTCAATAAAGAAGACTTCATCACAAACAAAGATGGCAAGAAT
AATGATGGCTGTGACCGTGGTTTTATTTTTGCTCTTTTGTAATAAATTCA
TTGTTGGTGACAAAGCAGATAAGGACGAATTCAAGCAAGATGACATTGTG
ATGAAGGACAATTCATCCCAAGGTTCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010641XLOC_010641Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018983-exon-sc0000314-1575043694:17820..17997TCONS_00018983-exon-sc0000314-1575043694:17820..17997Clytia hemisphaericaexon
TCONS_00018983-exon-sc0000314-1575043694:17557..17671TCONS_00018983-exon-sc0000314-1575043694:17557..17671Clytia hemisphaericaexon
TCONS_00018983-exon-sc0000314-1575043694:16950..17179TCONS_00018983-exon-sc0000314-1575043694:16950..17179Clytia hemisphaericaexon
TCONS_00018983-exon-sc0000314-1575043694:16209..16641TCONS_00018983-exon-sc0000314-1575043694:16209..16641Clytia hemisphaericaexon
TCONS_00018983-exon-sc0000314-1510915933:17820..17997TCONS_00018983-exon-sc0000314-1510915933:17820..17997Clytia hemisphaericaexon
TCONS_00018983-exon-sc0000314-1510915933:17557..17671TCONS_00018983-exon-sc0000314-1510915933:17557..17671Clytia hemisphaericaexon
TCONS_00018983-exon-sc0000314-1510915933:16950..17179TCONS_00018983-exon-sc0000314-1510915933:16950..17179Clytia hemisphaericaexon
TCONS_00018983-exon-sc0000314-1510915933:16209..16641TCONS_00018983-exon-sc0000314-1510915933:16209..16641Clytia hemisphaericaexon
TCONS_00018983-exon-sc0000314-1491911889:17820..17997TCONS_00018983-exon-sc0000314-1491911889:17820..17997Clytia hemisphaericaexon
TCONS_00018983-exon-sc0000314-1491911889:17557..17671TCONS_00018983-exon-sc0000314-1491911889:17557..17671Clytia hemisphaericaexon
TCONS_00018983-exon-sc0000314-1491911889:16950..17179TCONS_00018983-exon-sc0000314-1491911889:16950..17179Clytia hemisphaericaexon
TCONS_00018983-exon-sc0000314-1491911889:16209..16641TCONS_00018983-exon-sc0000314-1491911889:16209..16641Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018983-proteinTCONS_00018983-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000314supercontigsc0000314:16209..17997 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0474936	0.0463138	0.395219	0.057573	0	0.0506114	0.929724	0.965582	8.72327	3.86331	2.16629	4.02929	8.16126	5.81154	26.0513	26.7683	5.24313	7.77299	3.51228	6.90916	0.229598	0	0	0	0	0	0	0	0	0.0537075
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008160Collagen
Blast
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BLAST of TCONS_00018983 vs. Swiss-Prot (Human)
Match: CTHR1 (Collagen triple helix repeat-containing protein 1 OS=Homo sapiens GN=CTHRC1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.705e-16
Identity = 52/144 (36.11%), Postives = 81/144 (56.25%), Query Frame = 2 
Query:  452 NIKQCAWKRLSTNNYDTTEIGLIKECSIQKRVASSELLVTVSTTIRVYSCKN-CCKRWFVTFDGDECA-PVPIDHALYRYEASRDFIPL-------TLKGLCKVNKSGLVRVGLNIEDCGSKTGSVDGDTGYYRSTFRILIEEV 856
            N KQC+W  L   NY   ++G I EC+  K  ++S L V  S ++R+  C+N CC+RW+ TF+G EC+ P+PI+  +Y  + S +           +++GLC+   +GLV V + +  C S     D  TG + S  RI+IEE+
Sbjct:  105 NYKQCSWSSL---NYGI-DLGKIAECTFTKMRSNSALRVLFSGSLRL-KCRNACCQRWYFTFNGAECSGPLPIEAIIYLDQGSPEMNSTINIHRTSSVEGLCEGIGAGLVDVAIWVGTC-SDYPKGDASTG-WNSVSRIIIEEL 241
The following BLAST results are available for this feature:
BLAST of TCONS_00018983 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTHR13.705e-1636.11Collagen triple helix repeat-containing protein 1 ... [more]
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