TCONS_00019057 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019057
Unique NameTCONS_00019057
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1749

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019057 ID=TCONS_00019057|Name=TCONS_00019057|organism=Clytia hemisphaerica|type=transcript|length=1749bp
aaagtacccaTCACAAAGGctttttacaaaatttagtttttaacgCCGTA
AAATCAATATACCTTTGTATTATTCCCTTGTTGCGCAAAATGTACCTCTA
TAAAAACCCAAAGGAACAAGAGCGAGAATTCATACATTTTGTGAATATGT
ACATAAAAACTTTTTACTCAAAGTTGTTTTTCaaatcgatactttttttc
tggACACCCTGTAGAAACAGAATACCTTTAaagggacaaaattttggcaa
atgagcccattcgccaattttggtgcaatttggcagaatttattttggca
atttaatgaaatttctaaaattggCGAACAGAAATAATTTTAGTAAACGA
cccattttttgttgaaattttgggcttaaaaagtaggaaaaaaggatttt
taggagaaatagagaTTGGtgtgaaagaaatttaaatttggcgataattt
attttggcgaatggcctataaatctaaatttggctagaagaagttttttc
gccaaattcgccaaaatttcttctcttaaggtaatgACTTTACCATATGA
TTTATCTTTTCATGTTTAGAATAATAATTTATTCAATATGCCATTAACAA
AGAAAGAGGTAGATGAATTGCAGCCCATTATAAAGGAAACTGTCACCAAA
AGACTTGGGTTCCCTGAAAATGCTGTCATTAAAGCTGCTGTCGCTTGTCT
CCAAGAGGAGTTAGATCATGATATGGCAACAGAAAAGATGTCTTCACTTT
TGGGTGATGATCTGGCACCGCGTTTTGTTGAAGATCTTCAAAATGCTGCC
AGCAGGTTCAGGAGAAGTAAGTCTGCTGTTCGAAAGAGACCCAGTGTAGC
AGATGAGGATCCAGAAAGTTTAAAGAAAGCCAAATTGAACCGACTATCAG
CTTTGATTGACGATGAACCATTACCTCCAACTTTACCAGAGAAAACAGAG
AAACCACCTGCAAATATGATGGAAAATGCTAGCAACATTAATGCCATGGT
GGCTAATGTCAAAAGACAGATTGAAGAACGAAAGAAAATGTTGATCCAAT
CTGGTGTTGCTCCAGCTTTGATCCAGCAATCTGACCAAAGGGTACAGAAG
ACTaaagaacaacaacaacaagcaTTGAGAGATGAAAAAGCGAAACGAGC
TGCTGAGCTACAAGCCAAAATTGCTGCCAAATCTAACAAGCTTCTTTCTG
GTTTATCAGCTTTGAAGAATTTACCAATCAAACCACAACCAACACAGCCT
GCACCCGATACAGTGCCGATCAGTGAAATGACCAGACCTGCTGCAGTCGT
TCTGGATGCTGAAGGGAATCCTATTGATCAAGCCACTGGTCGTCAAATCT
CAATCACCAAGAGAATGCCAACGTTGAAGGTTAACATTCGCGAACGAAAG
AAAGAggagttgaaaaatgaagaagttcTTCCACAAGCTTCTACTGCTAC
AATTGAAGAGGATGATAGACCCATGCATTTTGACCCTAGAATGGGAACGG
CACCGGCCACAAGAGGTCGAAGAAATTTCACCTTCCATCGTCCTGGTAAA
TTTCAACAGCTTGGTCAAAAGATGAGAGCTAAAGCGCAAATGGAGAAGCT
ACAACGTCAAATTCAAGAAGTGGCCAAGAAGACAGGCATCTCTTCAGCTG
CTAAGCTAGCTATGGTTGCAAAGAAGGAAGAATTTGAAACGAAATATATC
CCAGATATTGAGTGGTGGGATATGGCTTTACTACCCAATCACACGTAAG
Run BLAST on NCBI

protein sequence of TCONS_00019057-protein

>TCONS_00019057-protein ID=TCONS_00019057-protein|Name=TCONS_00019057-protein|organism=Clytia hemisphaerica|type=polypeptide|length=386bp
MPLTKKEVDELQPIIKETVTKRLGFPENAVIKAAVACLQEELDHDMATEK
MSSLLGDDLAPRFVEDLQNAASRFRRSKSAVRKRPSVADEDPESLKKAKL
NRLSALIDDEPLPPTLPEKTEKPPANMMENASNINAMVANVKRQIEERKK
MLIQSGVAPALIQQSDQRVQKTKEQQQQALRDEKAKRAAELQAKIAAKSN
KLLSGLSALKNLPIKPQPTQPAPDTVPISEMTRPAAVVLDAEGNPIDQAT
GRQISITKRMPTLKVNIRERKKEELKNEEVLPQASTATIEEDDRPMHFDP
RMGTAPATRGRRNFTFHRPGKFQQLGQKMRAKAQMEKLQRQIQEVAKKTG
ISSAAKLAMVAKKEEFETKYIPDIEWWDMALLPNHT
Run BLAST on NCBI

transcript from alignment at sc0000317:298589..305332-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019057 ID=TCONS_00019057|Name=TCONS_00019057|organism=Clytia hemisphaerica|type=transcript|length=6744bp|location=Sequence derived from alignment at sc0000317:298589..305332- (Clytia hemisphaerica)
AAAGTACCCATCACAAAGGCTTTTTACAAAATTTAGTTTTTAACGCCGTA
AAATCAATATACCTTTGTATTATTCCCTTGTTGCGCAAAATGTACCTCTA
TAAAAACCCAAAGGAACAAGAGCGAGAATTCATACATTTTGTGAATATGT
ACATAAAAACTTTTTACTCAAAGTTGTTTTTCAAATCGATACTTTTTTTC
TGGACACCCTGTAGAAACAGAATACCTTTAAAGGGACAAAATTTTGGCAA
ATGAGCCCATTCGCCAATTTTGGTGCAATTTGGCAGAATTTATTTTGGCA
ATTTAATGAAATTTCTAAAATTGGCGAACAGAAATAATTTTAGTAAACGA
CCCATTTTTTGTTGAAATTTTGGGCTTAAAAAGTAGGAAAAAAGGATTTT
TAGGAGAAATAGAGATTGGTGTGAAAGAAATTTAAATTTGGCGATAATTT
ATTTTGGCGAATGGCCTATAAATCTAAATTTGGCTAGAAGAAGTTTTTTC
GCCAAATTCGCCAAAATTTCTTCTCTTAAGGTAATGACTTTACCATATGA
TTTATCTTTTCATGTTTAGAATAATAATTTATTCAATATGCCATTAACAA
AGAAAGAGGTAGATGAATTGCAGCCCATTATAAAGGAAACTGTCACCAAA
AGACTTGGGTTCCCTGAAAATGCTGTCATTAAAGCTGCTGTCGCTTGTCT
CCAAGAGGAGTTAGATCATGATATGGCAACAGAAAAGATGTCTTCACTTT
TGGGTGATGATCTGGCACCGCGTTTTGTTGAAGATCTTCAAAATGCTGCC
AGCAGGTTCAGGTAATAAAAACTTTAAATTTTGGGAAGGCAAATCCATAG
AAAAAAGTCCCTCTCATATTTTTTTTGGTGTAATTTATTTCCAATTCATT
ATATATTTAACATGTTGAAGATTGTGTAAAACAGAATGAATAAACTTTTA
AATGTTTTTATCACCTCAAATTACTGTATAAAAGAAGACATTTATTTGGA
TATTCCTTTTTGGATCTACCATTGGGGTCTTTTAAATTAACTGCTCCGTT
CGCCACTTCACCTGGTAAGAAGCCGAATTTCACTCATTCACGCAATAAAC
ATTGCATTTTTAGAACTAACTTTATAAGAACATGAGGCTTCGGTTGCGAA
AATATTAAGAGAAGTTAAGAACATTATTAACACTTTACGAACTGTAGAAC
ACCCAATTTCTTATGGATTTGACGTTCTTATAAAATAAGTTGCATGCCCA
TGGGTAGGAAAAGGAAGAGAATATTTAAACTGAATTTCGGATTTTTATAC
TTTTTGAAACTTATATAAATAATATTATGTATGATGATCAAAGTTAAGAC
TAATTTTCTCCGTCTATACGGAGTGTAAAACATATAAAGTAGTCAGAGAT
AACACATCATCTTTCTATGAATAATGTGACGGAGCCCGATTTTTGAAAAA
AATATTTTTGGGCAAATTTCAACCAAAAAACGGCTAAAAAAAGGGTTTTT
AAGACTTAGTGAAAAAATTGGATCATTAATTTTTTCTGATTTTTTGCATG
AAAGTAGGGTAACATCATTGGTAAAAGATGGCTGAAGCAGATTTTCAAAA
AAAAATCTTTATCTATAAGAATCGCTATTTATAAGCATAGATCAATGTTC
TTGTAGTCATATTATTATTTTTATTAAGATGAAAATGTCACGGTGGAGGG
CAATGGTTTGAGTTTTCTAGAAACCACGCGTATTGGATGGGAAATAAGTG
GCTTCGTTTCTCATCAAAGCTTTCTCTCTAGCCCTTTCGGGGGCTTTAAA
CTCAATGGTTTCAAGGATAAAATTTCGTTAATTTTTTAAAGAAACCCGTC
GCACTAAAGCGATGTTTTTACGCAATTTTCTGAATGTCTCTGGGCTTTTT
GGGCCTACCTCGGAGGTCCTTTAAATTAACATTTGTCCGTTCGTCGGTCC
GTCCGTCTGTTACCAGTTTTTCTCGAGATTGGCTCATTAGTTTTTTCTGA
TTTTTGGCACAAAGGTCCAAAATAGTGATATCCAAAATGTGACGGAGACC
GACTTTCGAAAACCTGAAAAACCCGTTTTTTTTGGCATTTTCTCGAGATT
TCATCAATAGTTTTTTCTGATTATTTTAACAATGCCAACCATCAAACATG
ATTCAATTGTCAATAAAACTGATTTTTGCAACTGGATCTTTCTATTTTTT
CCCTACTCCCCATCAACAATAAATGATAAAATTTAAGGAGTTTTGCATTT
ACGCTATTAAAAACGCTATATTTTCTGTCTGATTGTTTTCATTTTTCTAC
TTATTACTATCTAACTTTCATAGTCCAGTAGGTCCATTCAGCATCTAGCT
TGTTTCTATTTTTATTGTTTGGAAAGTGTTCATTCTTAAAATTCAGTGCA
ATCCAAGTTAATAAATTGTAATAGAACTTCAAGACTTTTTTCTTCATGAT
GATGATTTTATATTAGGAGAAGTAAGTCTGCTGTTCGAAAGAGACCCAGT
GTAGCAGATGAGGATCCAGAAAGTTTAAAGAAAGCCAAATTGAACCGACT
ATCAGCTTTGATTGACGATGAACCATTACCTCCAACTTTACCAGAGAAAA
CAGAGAAACCACCTGCAAATATGATGGAAAATGCTAGCAACATTAATGCC
ATGGTGGCTAATGTCAAAAGACAGATTGAAGAACGAAAGAAAATGTTGAG
TAAGTCCGTTTTCAAAAATTTATTTGATTTAACGTCACAAAGATGTTCGT
CTCCATGCTTTTTATAAAAACGCGTCCAGTGTAAAAACCCTCTTTTTTTG
TAAAATATAGAGAGCAGTAGCTTCAACAAAAATGTTTTTTCACAACATAA
ATTATCCTAGGGTACATAATATTGATTTTAATGTTGAAAATGATTAAAAA
TGTACCCTATATATCACTTAACTTCACCCTTTAAGTATGCAGTATTTGTG
CTCTACATGGACCTGCAGTTTAAATCTCTCTCTTTATGGATACCCACTAT
TTTTAAGTATCTTGGCAAAAATAAATCTAGCATAGTTTCGTCAATTTTCA
GATTTTCGGTAGGATTAAAAATGAAACATTTGAAAAGATAAAAAGCTTTA
TGGCATTTCACCACTTACACGACACTTATTAATCTAAACCTTAATCCCAT
AGAAACTTGTTCTAATATGATAATCAAAATTTTCTCATTCATATTTCATA
TATTCTTCATAGTCCAATCTGGTGTTGCTCCAGCTTTGATCCAGCAATCT
GACCAAAGGGTACAGAAGACTAAAGAACAACAACAACAAGCATTGAGAGA
TGAAAAAGCGAAACGAGCTGCTGAGCTACAAGCCAAAATTGCTGCCAAAT
CTAACAAGGTGAATAAAGCATACTTTACATTCCAAGATATGATTACATAC
AATATGCAATGTCTTATGAATTAAATCCTAAAAAAAAAATTGTTTGTAAG
TGACATAAAATCAGTCAATACGAGGCTTCAGTAATGGATATAACACAACA
ATGGGAATCTAACTGTTTTTTTTTTCTTTTTCCTATTTAGCTTCTTTCTG
GTTTATCAGCTTTGAAGAATTTACCAATCAAACCACAACCAACACAGCCT
GCACCCGATACAGTGCCGATCAGTGAAATGACCAGACCTGCTGCAGTCGT
TCTGGATGCTGAAGGGAATCCTATTGATCAAGCCACTGGTCGTCAAATCT
CAATCACCAAGAGAATGCCAACGTTGAAGGTTTGTTTGTTTGGCTTTGTC
TAGTTTTATTGTCGGAATTGATCATTATATTCTACATCTTTTACTCGACA
GAATTAGGATGAGTCTTTAAGCTTGAATTTTAACACTTTTCAAAATTAGG
AATTTTCATGTTTCAAAATTTCAAGGATGATCTCGACTCAAGTGAGTAAA
AATTTCAAAAAGATACCCAATTCAATTCCTTTACTTTTTATGCTAATTTG
CCTACTCCAATTGTTTTAATTTTGATTTTGAATCGTACATAGTAAATTGT
AAGGTTTTAATATGGACTTGCGAGATCGATGAATTTGTGAGATATCTAAA
GGGATAAACAAATTAGTAAGAAAAAAATAGAGTTCTAACGTAAGAACCCA
ATTTTAGAAATTTCATGTTTTCATTTCTTGACTTTAATGGAAAAAAGAGT
TAGGAAAAAACATTTAATGGTTTTGCTCAGAGCCATGGATGGCAAGAGAT
CTCAAACCATCTGATTATCCCTTAAAATCTGATCAGTGTGTTTTTTTTAA
ATGGTACAAAGAAAATTGTAATTTCTTTAATGAACTTTATTAGATATTTA
AATCTAATCACACATTTTGTGTTTCAGGTTAACATTCGCGAACGAAAGAA
AGAGGAGTTGAAAAATGAAGAAGTTCTTCCACAAGCTTCTACTGCTACAA
TTGAAGAGGATGATAGACCCATGCATTTTGACCCTAGAATGGGGTGAGTT
TTCAATTATATGATGGGATTGTTGAGTATCTCGATTGGTATCATCTATTC
CCTGAATGTTATTCCTGAACACCGACATACCTAGGGGGGGGCTGAAGTTT
AGTGACGCCATGAGGGCCAACCATGGTTTGGCCTGAGGGGGGGGATTTTG
AAAATTTGAGCTCTAGATTGCTTGAAAATGCACTCAAAACAAAATGCTGT
TGTTTAAAAGACAATTATGACAAATTAAAAAAGAAAAAACTTTTGCAAAT
TATTGGGGGGGCATATTATTTTCGCCCCCCCCCCCCCCCCAGTTACTATG
GCACTGTGTTGGCTTAGACTTTTCGATACTGGGAAGATCTTTCGTTGCCT
CATTGTAGGGGAACTCAAGCTTTCCTTCCTCTATGACAAATCTCTTTCAA
TGCAGCAATATGTCTTCTAAAATGTAGACTTAAACATTGCAAAGTCACTC
TTAATCTGTCGAACCTCGTGAAACTATCGCATTATTATGTCACAGGTTTC
TGAAAGTTTAAACCTTTATAGTAGGGGGCAAACCCTTAGGACCCGTGACA
TCTTTTATGCGACGCAACCAAACCTTTTCCATTTCAAATAATGAAGTATT
TATAAGAGTTATATATAAGAGTTTTTCGCGAAGGGGGGGGGGTTTGCAAA
GGCCTAGGAAAATATTTTAGGACTCAAAAACTGACGTCACCCCTAAAATT
TGACTAAATCTCAAAGTCAATCAAGTCCGGAACCACTTATACCAATCGAA
AGCTCTCAAAAAACGATATATAGAGGACTTTTAAGTGGATATGATCCATT
TCCCATCGTAACTCGAGTAAATCGACCGAAAATGACGTCAAAACGTAATT
TTGACGTTAATGTCGTCGCATAAAAGATGTCACGGGTCCTAAAGGGTTTG
CCCCCTCCCCCCGATCTTTAAAGTCTTAAAATTTAGCAAAAGGTTTTTCG
ATTTGACAACTTTATTACTGATATAGACTTATCATTTTACTTTTAGAACG
GCACCGGCCACAAGAGGTCGAAGAAATTTCACCTTCCATCGTCCTGGTAA
ATTTCAACAGCTTGGTCAAAAGATGAGAGCTAAAGTAAGGAAAAAAGAAC
TTCAAATTTCAGTTTTTAGAAAGTTTTCAAAGACTAATCGAATTCAACCC
AACATTTTGTCCGGCCAGGTTGGAGATATTTTGTATGCAGATATGGTATA
TAGAGTAAAGTTTCAAAATATCTTGGCCTAAATTTTCCCCGAAGTCAAGA
TATTCGAGTCACGAGTTTTCAATTTTTGTAAGAACACAATACAATTTTAA
CCTTAGAACTGTGTAAGAACCTATTTTTAGAAATTTCAAATTGACATATC
TCTGGACTTTTGAAAGTTTGAGACTTGACTTTAATAGGGCATACTTTTAA
TTTTTGAAGAGTTGAGTCTTTGCCCTATCAAGAATAATATTTTCCGATCT
TGAGAATAGATCCTGATTCTTTGAGATTTTACCTGAACAGAATGAAACGT
TTATCATAATGCTAAATTTATTCGCCATAGTTTTATTGAAAAATCAAAAT
TTATTACAGTAAGCTTTTCGGCTACACCATCTTCAGTACAAAGATAGAAT
GTTAAAAATTTTCTATACAAAATGTAAAAAAAATTGCCTAATTATCTACA
AATAAATAATTCATTCATTCATCATATACTCTAAGGTTCGCAATAAACGG
GGGGGGTTGAAAAATTTTCGAAATTTTAATAAGACAATTAAAGTTAGATA
AATATAGGCTAAAATCATGCTATTTAGAGCAAAATAAGGGGCCTTCTCTT
TAACAGCTGAAAATATTCTTGAAAACTAATTTACGGGGGTTTCTAATAAG
GTCCAGGGGTGGAAAATTTTCGAAAAATTAACAAGCGGGGGTGGGGCGTT
TATTTGGAACCTAAGAGTAATGAAAGGCGCATTGCTTTCTCTTGAAATTC
GTTAGTAGCCCCAAGTTTTTATAAGTATCGGGAAAATTTTCGAAAAATTA
ACAAGCGGGGTGGGGCGTTTATTTGGAACCTAAGAGTAATGAAAGGCGCA
TTGTTTTCTCTTGAAATTCGTTAGTAGCCCCAAGTTTTTATAAGTATCAA
ACCAGATTTTGTTTTTGTCAACAACCAGGCGCAAATGGAGAAGCTACAAC
GTCAAATTCAAGAAGTGGCCAAGAAGACAGGCATCTCTTCAGCTGCTAAG
CTAGCTATGGTTGCAAAGAAGGAAGAATTTGAAACGAAATATATCCCAGA
TATTGAGTGGTGGGATATGGCTTTACTACCCAATCACACGTAAG

Coding sequence (CDS) from alignment at sc0000317:298589..305332-

>TCONS_00019057 ID=TCONS_00019057|Name=TCONS_00019057|organism=Clytia hemisphaerica|type=CDS|length=8127bp|location=Sequence derived from alignment at sc0000317:298589..305332- (Clytia hemisphaerica)
GCGCAAATGGAGAAGCTACAACGTCAAATTCAAGAAGTGGCCAAGAAGAC
AGGCATCTCTTCAGCTGCTAAGCTAGCTATGGTTGCAAAGAAGGAAGAAT
TTGAAACGAAATATATCCCAGATATTGAGTGGTGGGATATGGCTTTACTA
CCCAATCACACGTAAAACGGCACCGGCCACAAGAGGTCGAAGAAATTTCA
CCTTCCATCGTCCTGGTAAATTTCAACAGCTTGGTCAAAAGATGAGAGCT
AAAGTTAACATTCGCGAACGAAAGAAAGAGGAGTTGAAAAATGAAGAAGT
TCTTCCACAAGCTTCTACTGCTACAATTGAAGAGGATGATAGACCCATGC
ATTTTGACCCTAGAATGGGCTTCTTTCTGGTTTATCAGCTTTGAAGAATT
TACCAATCAAACCACAACCAACACAGCCTGCACCCGATACAGTGCCGATC
AGTGAAATGACCAGACCTGCTGCAGTCGTTCTGGATGCTGAAGGGAATCC
TATTGATCAAGCCACTGGTCGTCAAATCTCAATCACCAAGAGAATGCCAA
CGTTGAAGTCCAATCTGGTGTTGCTCCAGCTTTGATCCAGCAATCTGACC
AAAGGGTACAGAAGACTAAAGAACAACAACAACAAGCATTGAGAGATGAA
AAAGCGAAACGAGCTGCTGAGCTACAAGCCAAAATTGCTGCCAAATCTAA
CAAGGAGAAGTAAGTCTGCTGTTCGAAAGAGACCCAGTGTAGCAGATGAG
GATCCAGAAAGTTTAAAGAAAGCCAAATTGAACCGACTATCAGCTTTGAT
TGACGATGAACCATTACCTCCAACTTTACCAGAGAAAACAGAGAAACCAC
CTGCAAATATGATGGAAAATGCTAGCAACATTAATGCCATGGTGGCTAAT
GTCAAAAGACAGATTGAAGAACGAAAGAAAATGTTGAATGCCATTAACAA
AGAAAGAGGTAGATGAATTGCAGCCCATTATAAAGGAAACTGTCACCAAA
AGACTTGGGTTCCCTGAAAATGCTGTCATTAAAGCTGCTGTCGCTTGTCT
CCAAGAGGAGTTAGATCATGATATGGCAACAGAAAAGATGTCTTCACTTT
TGGGTGATGATCTGGCACCGCGTTTTGTTGAAGATCTTCAAAATGCTGCC
AGCAGGTTCAGGCGCAAATGGAGAAGCTACAACGTCAAATTCAAGAAGTG
GCCAAGAAGACAGGCATCTCTTCAGCTGCTAAGCTAGCTATGGTTGCAAA
GAAGGAAGAATTTGAAACGAAATATATCCCAGATATTGAGTGGTGGGATA
TGGCTTTACTACCCAATCACACGTAAAACGGCACCGGCCACAAGAGGTCG
AAGAAATTTCACCTTCCATCGTCCTGGTAAATTTCAACAGCTTGGTCAAA
AGATGAGAGCTAAAGTTAACATTCGCGAACGAAAGAAAGAGGAGTTGAAA
AATGAAGAAGTTCTTCCACAAGCTTCTACTGCTACAATTGAAGAGGATGA
TAGACCCATGCATTTTGACCCTAGAATGGGCTTCTTTCTGGTTTATCAGC
TTTGAAGAATTTACCAATCAAACCACAACCAACACAGCCTGCACCCGATA
CAGTGCCGATCAGTGAAATGACCAGACCTGCTGCAGTCGTTCTGGATGCT
GAAGGGAATCCTATTGATCAAGCCACTGGTCGTCAAATCTCAATCACCAA
GAGAATGCCAACGTTGAAGTCCAATCTGGTGTTGCTCCAGCTTTGATCCA
GCAATCTGACCAAAGGGTACAGAAGACTAAAGAACAACAACAACAAGCAT
TGAGAGATGAAAAAGCGAAACGAGCTGCTGAGCTACAAGCCAAAATTGCT
GCCAAATCTAACAAGGAGAAGTAAGTCTGCTGTTCGAAAGAGACCCAGTG
TAGCAGATGAGGATCCAGAAAGTTTAAAGAAAGCCAAATTGAACCGACTA
TCAGCTTTGATTGACGATGAACCATTACCTCCAACTTTACCAGAGAAAAC
AGAGAAACCACCTGCAAATATGATGGAAAATGCTAGCAACATTAATGCCA
TGGTGGCTAATGTCAAAAGACAGATTGAAGAACGAAAGAAAATGTTGAAT
GCCATTAACAAAGAAAGAGGTAGATGAATTGCAGCCCATTATAAAGGAAA
CTGTCACCAAAAGACTTGGGTTCCCTGAAAATGCTGTCATTAAAGCTGCT
GTCGCTTGTCTCCAAGAGGAGTTAGATCATGATATGGCAACAGAAAAGAT
GTCTTCACTTTTGGGTGATGATCTGGCACCGCGTTTTGTTGAAGATCTTC
AAAATGCTGCCAGCAGGTTCAGGCGCAAATGGAGAAGCTACAACGTCAAA
TTCAAGAAGTGGCCAAGAAGACAGGCATCTCTTCAGCTGCTAAGCTAGCT
ATGGTTGCAAAGAAGGAAGAATTTGAAACGAAATATATCCCAGATATTGA
GTGGTGGGATATGGCTTTACTACCCAATCACACGTAAAACGGCACCGGCC
ACAAGAGGTCGAAGAAATTTCACCTTCCATCGTCCTGGTAAATTTCAACA
GCTTGGTCAAAAGATGAGAGCTAAAGTTAACATTCGCGAACGAAAGAAAG
AGGAGTTGAAAAATGAAGAAGTTCTTCCACAAGCTTCTACTGCTACAATT
GAAGAGGATGATAGACCCATGCATTTTGACCCTAGAATGGGCTTCTTTCT
GGTTTATCAGCTTTGAAGAATTTACCAATCAAACCACAACCAACACAGCC
TGCACCCGATACAGTGCCGATCAGTGAAATGACCAGACCTGCTGCAGTCG
TTCTGGATGCTGAAGGGAATCCTATTGATCAAGCCACTGGTCGTCAAATC
TCAATCACCAAGAGAATGCCAACGTTGAAGTCCAATCTGGTGTTGCTCCA
GCTTTGATCCAGCAATCTGACCAAAGGGTACAGAAGACTAAAGAACAACA
ACAACAAGCATTGAGAGATGAAAAAGCGAAACGAGCTGCTGAGCTACAAG
CCAAAATTGCTGCCAAATCTAACAAGGAGAAGTAAGTCTGCTGTTCGAAA
GAGACCCAGTGTAGCAGATGAGGATCCAGAAAGTTTAAAGAAAGCCAAAT
TGAACCGACTATCAGCTTTGATTGACGATGAACCATTACCTCCAACTTTA
CCAGAGAAAACAGAGAAACCACCTGCAAATATGATGGAAAATGCTAGCAA
CATTAATGCCATGGTGGCTAATGTCAAAAGACAGATTGAAGAACGAAAGA
AAATGTTGAATGCCATTAACAAAGAAAGAGGTAGATGAATTGCAGCCCAT
TATAAAGGAAACTGTCACCAAAAGACTTGGGTTCCCTGAAAATGCTGTCA
TTAAAGCTGCTGTCGCTTGTCTCCAAGAGGAGTTAGATCATGATATGGCA
ACAGAAAAGATGTCTTCACTTTTGGGTGATGATCTGGCACCGCGTTTTGT
TGAAGATCTTCAAAATGCTGCCAGCAGGTTCAGGCGCAAATGGAGAAGCT
ACAACGTCAAATTCAAGAAGTGGCCAAGAAGACAGGCATCTCTTCAGCTG
CTAAGCTAGCTATGGTTGCAAAGAAGGAAGAATTTGAAACGAAATATATC
CCAGATATTGAGTGGTGGGATATGGCTTTACTACCCAATCACACGTAAAA
CGGCACCGGCCACAAGAGGTCGAAGAAATTTCACCTTCCATCGTCCTGGT
AAATTTCAACAGCTTGGTCAAAAGATGAGAGCTAAAGTTAACATTCGCGA
ACGAAAGAAAGAGGAGTTGAAAAATGAAGAAGTTCTTCCACAAGCTTCTA
CTGCTACAATTGAAGAGGATGATAGACCCATGCATTTTGACCCTAGAATG
GGCTTCTTTCTGGTTTATCAGCTTTGAAGAATTTACCAATCAAACCACAA
CCAACACAGCCTGCACCCGATACAGTGCCGATCAGTGAAATGACCAGACC
TGCTGCAGTCGTTCTGGATGCTGAAGGGAATCCTATTGATCAAGCCACTG
GTCGTCAAATCTCAATCACCAAGAGAATGCCAACGTTGAAGTCCAATCTG
GTGTTGCTCCAGCTTTGATCCAGCAATCTGACCAAAGGGTACAGAAGACT
AAAGAACAACAACAACAAGCATTGAGAGATGAAAAAGCGAAACGAGCTGC
TGAGCTACAAGCCAAAATTGCTGCCAAATCTAACAAGGAGAAGTAAGTCT
GCTGTTCGAAAGAGACCCAGTGTAGCAGATGAGGATCCAGAAAGTTTAAA
GAAAGCCAAATTGAACCGACTATCAGCTTTGATTGACGATGAACCATTAC
CTCCAACTTTACCAGAGAAAACAGAGAAACCACCTGCAAATATGATGGAA
AATGCTAGCAACATTAATGCCATGGTGGCTAATGTCAAAAGACAGATTGA
AGAACGAAAGAAAATGTTGAATGCCATTAACAAAGAAAGAGGTAGATGAA
TTGCAGCCCATTATAAAGGAAACTGTCACCAAAAGACTTGGGTTCCCTGA
AAATGCTGTCATTAAAGCTGCTGTCGCTTGTCTCCAAGAGGAGTTAGATC
ATGATATGGCAACAGAAAAGATGTCTTCACTTTTGGGTGATGATCTGGCA
CCGCGTTTTGTTGAAGATCTTCAAAATGCTGCCAGCAGGTTCAGGCGCAA
ATGGAGAAGCTACAACGTCAAATTCAAGAAGTGGCCAAGAAGACAGGCAT
CTCTTCAGCTGCTAAGCTAGCTATGGTTGCAAAGAAGGAAGAATTTGAAA
CGAAATATATCCCAGATATTGAGTGGTGGGATATGGCTTTACTACCCAAT
CACACGTAAAACGGCACCGGCCACAAGAGGTCGAAGAAATTTCACCTTCC
ATCGTCCTGGTAAATTTCAACAGCTTGGTCAAAAGATGAGAGCTAAAGTT
AACATTCGCGAACGAAAGAAAGAGGAGTTGAAAAATGAAGAAGTTCTTCC
ACAAGCTTCTACTGCTACAATTGAAGAGGATGATAGACCCATGCATTTTG
ACCCTAGAATGGGCTTCTTTCTGGTTTATCAGCTTTGAAGAATTTACCAA
TCAAACCACAACCAACACAGCCTGCACCCGATACAGTGCCGATCAGTGAA
ATGACCAGACCTGCTGCAGTCGTTCTGGATGCTGAAGGGAATCCTATTGA
TCAAGCCACTGGTCGTCAAATCTCAATCACCAAGAGAATGCCAACGTTGA
AGTCCAATCTGGTGTTGCTCCAGCTTTGATCCAGCAATCTGACCAAAGGG
TACAGAAGACTAAAGAACAACAACAACAAGCATTGAGAGATGAAAAAGCG
AAACGAGCTGCTGAGCTACAAGCCAAAATTGCTGCCAAATCTAACAAGGA
GAAGTAAGTCTGCTGTTCGAAAGAGACCCAGTGTAGCAGATGAGGATCCA
GAAAGTTTAAAGAAAGCCAAATTGAACCGACTATCAGCTTTGATTGACGA
TGAACCATTACCTCCAACTTTACCAGAGAAAACAGAGAAACCACCTGCAA
ATATGATGGAAAATGCTAGCAACATTAATGCCATGGTGGCTAATGTCAAA
AGACAGATTGAAGAACGAAAGAAAATGTTGAATGCCATTAACAAAGAAAG
AGGTAGATGAATTGCAGCCCATTATAAAGGAAACTGTCACCAAAAGACTT
GGGTTCCCTGAAAATGCTGTCATTAAAGCTGCTGTCGCTTGTCTCCAAGA
GGAGTTAGATCATGATATGGCAACAGAAAAGATGTCTTCACTTTTGGGTG
ATGATCTGGCACCGCGTTTTGTTGAAGATCTTCAAAATGCTGCCAGCAGG
TTCAGGCGCAAATGGAGAAGCTACAACGTCAAATTCAAGAAGTGGCCAAG
AAGACAGGCATCTCTTCAGCTGCTAAGCTAGCTATGGTTGCAAAGAAGGA
AGAATTTGAAACGAAATATATCCCAGATATTGAGTGGTGGGATATGGCTT
TACTACCCAATCACACGTAAAACGGCACCGGCCACAAGAGGTCGAAGAAA
TTTCACCTTCCATCGTCCTGGTAAATTTCAACAGCTTGGTCAAAAGATGA
GAGCTAAAGTTAACATTCGCGAACGAAAGAAAGAGGAGTTGAAAAATGAA
GAAGTTCTTCCACAAGCTTCTACTGCTACAATTGAAGAGGATGATAGACC
CATGCATTTTGACCCTAGAATGGGCTTCTTTCTGGTTTATCAGCTTTGAA
GAATTTACCAATCAAACCACAACCAACACAGCCTGCACCCGATACAGTGC
CGATCAGTGAAATGACCAGACCTGCTGCAGTCGTTCTGGATGCTGAAGGG
AATCCTATTGATCAAGCCACTGGTCGTCAAATCTCAATCACCAAGAGAAT
GCCAACGTTGAAGTCCAATCTGGTGTTGCTCCAGCTTTGATCCAGCAATC
TGACCAAAGGGTACAGAAGACTAAAGAACAACAACAACAAGCATTGAGAG
ATGAAAAAGCGAAACGAGCTGCTGAGCTACAAGCCAAAATTGCTGCCAAA
TCTAACAAGGAGAAGTAAGTCTGCTGTTCGAAAGAGACCCAGTGTAGCAG
ATGAGGATCCAGAAAGTTTAAAGAAAGCCAAATTGAACCGACTATCAGCT
TTGATTGACGATGAACCATTACCTCCAACTTTACCAGAGAAAACAGAGAA
ACCACCTGCAAATATGATGGAAAATGCTAGCAACATTAATGCCATGGTGG
CTAATGTCAAAAGACAGATTGAAGAACGAAAGAAAATGTTGAATGCCATT
AACAAAGAAAGAGGTAGATGAATTGCAGCCCATTATAAAGGAAACTGTCA
CCAAAAGACTTGGGTTCCCTGAAAATGCTGTCATTAAAGCTGCTGTCGCT
TGTCTCCAAGAGGAGTTAGATCATGATATGGCAACAGAAAAGATGTCTTC
ACTTTTGGGTGATGATCTGGCACCGCGTTTTGTTGAAGATCTTCAAAATG
CTGCCAGCAGGTTCAGGCGCAAATGGAGAAGCTACAACGTCAAATTCAAG
AAGTGGCCAAGAAGACAGGCATCTCTTCAGCTGCTAAGCTAGCTATGGTT
GCAAAGAAGGAAGAATTTGAAACGAAATATATCCCAGATATTGAGTGGTG
GGATATGGCTTTACTACCCAATCACACGTAAAACGGCACCGGCCACAAGA
GGTCGAAGAAATTTCACCTTCCATCGTCCTGGTAAATTTCAACAGCTTGG
TCAAAAGATGAGAGCTAAAGTTAACATTCGCGAACGAAAGAAAGAGGAGT
TGAAAAATGAAGAAGTTCTTCCACAAGCTTCTACTGCTACAATTGAAGAG
GATGATAGACCCATGCATTTTGACCCTAGAATGGGCTTCTTTCTGGTTTA
TCAGCTTTGAAGAATTTACCAATCAAACCACAACCAACACAGCCTGCACC
CGATACAGTGCCGATCAGTGAAATGACCAGACCTGCTGCAGTCGTTCTGG
ATGCTGAAGGGAATCCTATTGATCAAGCCACTGGTCGTCAAATCTCAATC
ACCAAGAGAATGCCAACGTTGAAGTCCAATCTGGTGTTGCTCCAGCTTTG
ATCCAGCAATCTGACCAAAGGGTACAGAAGACTAAAGAACAACAACAACA
AGCATTGAGAGATGAAAAAGCGAAACGAGCTGCTGAGCTACAAGCCAAAA
TTGCTGCCAAATCTAACAAGGAGAAGTAAGTCTGCTGTTCGAAAGAGACC
CAGTGTAGCAGATGAGGATCCAGAAAGTTTAAAGAAAGCCAAATTGAACC
GACTATCAGCTTTGATTGACGATGAACCATTACCTCCAACTTTACCAGAG
AAAACAGAGAAACCACCTGCAAATATGATGGAAAATGCTAGCAACATTAA
TGCCATGGTGGCTAATGTCAAAAGACAGATTGAAGAACGAAAGAAAATGT
TGAATGCCATTAACAAAGAAAGAGGTAGATGAATTGCAGCCCATTATAAA
GGAAACTGTCACCAAAAGACTTGGGTTCCCTGAAAATGCTGTCATTAAAG
CTGCTGTCGCTTGTCTCCAAGAGGAGTTAGATCATGATATGGCAACAGAA
AAGATGTCTTCACTTTTGGGTGATGATCTGGCACCGCGTTTTGTTGAAGA
TCTTCAAAATGCTGCCAGCAGGTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010675XLOC_010675Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019057-proteinTCONS_00019057-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019057-exon-sc0000317-1575043694:304522..305332TCONS_00019057-exon-sc0000317-1575043694:304522..305332Clytia hemisphaericaexon
TCONS_00019057-exon-sc0000317-1575043694:302634..302866TCONS_00019057-exon-sc0000317-1575043694:302634..302866Clytia hemisphaericaexon
TCONS_00019057-exon-sc0000317-1575043694:301975..302120TCONS_00019057-exon-sc0000317-1575043694:301975..302120Clytia hemisphaericaexon
TCONS_00019057-exon-sc0000317-1575043694:301604..301792TCONS_00019057-exon-sc0000317-1575043694:301604..301792Clytia hemisphaericaexon
TCONS_00019057-exon-sc0000317-1575043694:300890..301005TCONS_00019057-exon-sc0000317-1575043694:300890..301005Clytia hemisphaericaexon
TCONS_00019057-exon-sc0000317-1575043694:299799..299886TCONS_00019057-exon-sc0000317-1575043694:299799..299886Clytia hemisphaericaexon
TCONS_00019057-exon-sc0000317-1575043694:298589..298754TCONS_00019057-exon-sc0000317-1575043694:298589..298754Clytia hemisphaericaexon
TCONS_00019057-exon-sc0000317-1510915933:304522..305332TCONS_00019057-exon-sc0000317-1510915933:304522..305332Clytia hemisphaericaexon
TCONS_00019057-exon-sc0000317-1510915933:302634..302866TCONS_00019057-exon-sc0000317-1510915933:302634..302866Clytia hemisphaericaexon
TCONS_00019057-exon-sc0000317-1510915933:301975..302120TCONS_00019057-exon-sc0000317-1510915933:301975..302120Clytia hemisphaericaexon
TCONS_00019057-exon-sc0000317-1510915933:301604..301792TCONS_00019057-exon-sc0000317-1510915933:301604..301792Clytia hemisphaericaexon
TCONS_00019057-exon-sc0000317-1510915933:300890..301005TCONS_00019057-exon-sc0000317-1510915933:300890..301005Clytia hemisphaericaexon
TCONS_00019057-exon-sc0000317-1510915933:299799..299886TCONS_00019057-exon-sc0000317-1510915933:299799..299886Clytia hemisphaericaexon
TCONS_00019057-exon-sc0000317-1510915933:298589..298754TCONS_00019057-exon-sc0000317-1510915933:298589..298754Clytia hemisphaericaexon
TCONS_00019057-exon-sc0000317-1491911889:304522..305332TCONS_00019057-exon-sc0000317-1491911889:304522..305332Clytia hemisphaericaexon
TCONS_00019057-exon-sc0000317-1491911889:302634..302866TCONS_00019057-exon-sc0000317-1491911889:302634..302866Clytia hemisphaericaexon
TCONS_00019057-exon-sc0000317-1491911889:301975..302120TCONS_00019057-exon-sc0000317-1491911889:301975..302120Clytia hemisphaericaexon
TCONS_00019057-exon-sc0000317-1491911889:301604..301792TCONS_00019057-exon-sc0000317-1491911889:301604..301792Clytia hemisphaericaexon
TCONS_00019057-exon-sc0000317-1491911889:300890..301005TCONS_00019057-exon-sc0000317-1491911889:300890..301005Clytia hemisphaericaexon
TCONS_00019057-exon-sc0000317-1491911889:299799..299886TCONS_00019057-exon-sc0000317-1491911889:299799..299886Clytia hemisphaericaexon
TCONS_00019057-exon-sc0000317-1491911889:298589..298754TCONS_00019057-exon-sc0000317-1491911889:298589..298754Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000317supercontigsc0000317:298589..305332 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.3942	9.6151	3.39095	2.27122	25.7238	22.0212	21.9176	23.6245	17.1225	20.2231	19.0222	16.0026	18.0334	22.308	14.9259	19.008	17.4844	18.8072	9.99166	9.78927	13.4535	12.1247	28.1841	27.5206	28.2219	25.8717	8.08678	6.9448	20.8394	23.6809
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002483PWI_dom
IPR013881Pre-mRNA_splic_Prp3
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006397 mRNA processing
Blast
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BLAST of TCONS_00019057 vs. Swiss-Prot (Human)
Match: PRPF3 (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Homo sapiens GN=PRPF3 PE=1 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 3.551e-48
Identity = 146/418 (34.93%), Postives = 222/418 (53.11%), Query Frame = 3 
Query:  588 MPLTKKEVDELQPIIKETVTKRLGFPENAVIKAAVACLQEELDHDMATEKMSSLLGDDLAPRFVEDLQNAASRFRRSKSAVRKRP--------SVADEDPE------SLKKAKLNRLSALIDDEXXXXXXXXXXXXXXANMMENASNINAMVANVKRQIEERKKMLIQSGVAPALIQ-------QSDXXXXXXXXXXXXA---LRD--EKAKRAAELQAKIAAK--------SNKLLSGLSALKNLPIKPQPTQPAPDTVPISEMTRPAAVVLDAEGNPIDQATGRQISITKRMPTLKVNIXXXXXXXXXXXXVLPQASTATIEEDDRPMHFDPRMGTAPATRGRRNFTFHRPGKFQQLGQKMRAKAQMEKLQRQIQEVAKKTGISSAAKLAMVAKKEEFETKYIPDIEWWDMALLPN 1739
            M L+K+E+DEL+P I++TV + LGF E  V+ AA+ C+ + +D   A + +   L DD   RFV+ L  A    R S+ +              V  +D E       +KK ++ R   + ++  + P  P ++      +      I  M+    RQIEERKK L  S ++P   Q       Q ++       Q  QA   + D  EKA++AAELQA+I A+         N  + GL+ L  + I       AP  V + + T+P  ++LD +G  +D ATG++I +T RMPTLK NIR  K+E+ K      Q      E+ +    FDPR+  AP+ R RR F FH  GKF+++ Q++R KAQ+EKLQ +I + A+KTGI ++ +LA++A K+E +   IP+IEWWD  ++PN
Sbjct:    1 MALSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFL-DDSTLRFVDKLFEAVEEGRSSRHSKSSSDRSRKRELKEVFGDDSEISKESSGVKKRRIPRFEEVEEEPEVIPGPPSESPGMLTKL-----QIKQMMEAATRQIEERKKQL--SFISPPTPQPKTPSSSQPERLPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGI-------APPKVELKDQTKPTPLILDEQGRTVD-ATGKEIELTHRMPTLKANIRAVKREQFKQ-----QLKEKPSEDMESNTFFDPRVSIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAARKTGIHTSTRLALIAPKKELKEGDIPEIEWWDSYIIPN 397
The following BLAST results are available for this feature:
BLAST of TCONS_00019057 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRPF33.551e-4834.93U4/U6 small nuclear ribonucleoprotein Prp3 OS=Homo... [more]
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