TCONS_00019518 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00019518
Unique Name	TCONS_00019518
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1657

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000329:288181..293075+
coding sequence from alignment at sc0000329:288181..293075+

transcript sequence

>TCONS_00019518 ID=TCONS_00019518|Name=TCONS_00019518|organism=Clytia hemisphaerica|type=transcript|length=1657bp
tttttttctcagaaagtATTTAATATTAAGCTATAAATGGCAACAGTGGA
AGaggtcaatgacgtcatcataataGGAGCAGGTTGGTCTGGTCTTTTAT
CATGTAAATATGCTCTGGAAGAGAAACTTTCAGTCCGGGTACTCGAGAAA
CGAGAAGACATAGGCGGAGTATGGAAATTCTCTGACGACCCTAATGTCAC
GACCGTAATGCGGAACTCGACCACATCAAGCTCAAGTACGGTTACGGaaa
tcagtgattttcctaTGCCAGAAAGCATTGGGGAATTTCCAAAACACTGG
GATATAAACCAATATTTGAATGATTTTGCCGATGTGCATAAATTACGACG
ATATATCCATTTCAACACGACAGTCAAACGCATGTATAAAATTAACGAAA
TCTGGAACATTGAGACTGAGAATCATAAAGAATATCGAGGCAAAAACGTC
ATTGTGTGTTCTGGTGTCCATCAAAAAGCAAACACAGATCTGGAGACTGG
GTTGCTGAAGAATTTTACCGGCGATTTACGACATTCAGGTAATCTGAAAG
AGTTCGCGGAGGAGCATCGCGGTAGGAGATTGATGATCATCGGAGGTGGA
GAGACTGCAAGTGATATTATGGATGAATGGTACCCGAACGTGGATTCCAT
CATCTGGTGTATACCACGTGGTCAACATTTCTTCCGTAAATACGCCAAAC
TTTTACCGAACCGTAAACCACAAGCTTTGGATAAAGCATCATCAAGAGCA
TTGAAACTTGTATCACCTCACACTAGAAGTAAAccagGTCTAGCCTGGAT
TTGCAGATGGACAACAAACGGATCAATCACAGCCTACCAAGGTCATGGAA
TCCCCGAATTCCGAAACGAGGCTCCTTTCTTTCATTCGTTTATCAATAAA
CACGCGCATGCGTTAGATTATATCGATTATGAAAAAGTCATTCCGAAAGG
ACCAATAGAATGTGTCACAGGAAATCACGTGATCTTTAAAGACGGGTCAT
CAGTTGATGTGGATGTTATCATACAGTGTACTGGATACGAAGTCTCATTT
CCGTTTCTACCAAAAACACAACAACTCAAGCCTACCGAGTTATACAAATT
CGTTTTCAATCCCGAAGACCCTACACTCTCGTTTGTCGGTTTCGTTCGGC
CTATAGTCGGCTCGATTCCCGGTATAGCGGAAATGAATGCTCGTTGGGTT
TGTCGGACGATAAGTGGGCGTGTTCCAATGGCGTGTAAAATTGAACGGCA
TAGGGCGATATATGAAGATCAAAAATTTTGGTTAGAATACTTTGATAAAA
CGTCACATCGGATTGGAACTTTAGTGGAAGGTTACACCTATTTGGACGAT
ATTGCTAAATTAAGTCAGTGCTATCCAGATTATTGGTCACTGTTTAAACG
GAACCCGACTGCGGCGATTACCGCTTACTTTGCACCTTATAACGGTTGCT
CTTACAGGCTAAACGAGCCACAACAAGAGGAACTAGCCTTGGAGACTTTG
AAAAGACATTCGAAAGATACAATGAACTTTTGGAATccgtttttcatttt
gtttttgcgATTAATTCTGTTTGATTGGTTTTGTGATATACTTGGTGCTG
TCAAATATCGAATTCAAACGAACCCAAGATGGCAGACCGTTCGAGAATGG
AGGCTNN

Run BLAST on NCBI

protein sequence of TCONS_00019518-protein

>TCONS_00019518-protein ID=TCONS_00019518-protein|Name=TCONS_00019518-protein|organism=Clytia hemisphaerica|type=polypeptide|length=540bp
MATVEEVNDVIIIGAGWSGLLSCKYALEEKLSVRVLEKREDIGGVWKFSD
DPNVTTVMRNSTTSSSSTVTEISDFPMPESIGEFPKHWDINQYLNDFADV
HKLRRYIHFNTTVKRMYKINEIWNIETENHKEYRGKNVIVCSGVHQKANT
DLETGLLKNFTGDLRHSGNLKEFAEEHRGRRLMIIGGGETASDIMDEWYP
NVDSIIWCIPRGQHFFRKYAKLLPNRKPQALDKASSRALKLVSPHTRSKP
GLAWICRWTTNGSITAYQGHGIPEFRNEAPFFHSFINKHAHALDYIDYEK
VIPKGPIECVTGNHVIFKDGSSVDVDVIIQCTGYEVSFPFLPKTQQLKPT
ELYKFVFNPEDPTLSFVGFVRPIVGSIPGIAEMNARWVCRTISGRVPMAC
KIERHRAIYEDQKFWLEYFDKTSHRIGTLVEGYTYLDDIAKLSQCYPDYW
SLFKRNPTAAITAYFAPYNGCSYRLNEPQQEELALETLKRHSKDTMNFWN
PFFILFLRLILFDWFCDILGAVKYRIQTNPRWQTVREWRX

Run BLAST on NCBI

transcript from alignment at sc0000329:288181..293075+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00019518 ID=TCONS_00019518|Name=TCONS_00019518|organism=Clytia hemisphaerica|type=transcript|length=4895bp|location=Sequence derived from alignment at sc0000329:288181..293075+ (Clytia hemisphaerica)
tttttttctcagaaagtATTTAATATTAAGCTATAAATGGCAACAGTGGA
AGaggtcaatgacgtcatcataataGGAGCAGGTTGGTCTGGTCTTTTAT
CATGTAAATATGCTCTGGAAGAGAAACTTTCAGTCCGGGTACTCGAGAAA
CGAGAAGACATAGGCGGAGTATGGAAATTCTCTGACGACCCTAATGTCAC
GACCGTAATGCGGAACTCGACCACATCAAGCTCAAGTACGGTTACGGaaa
tcagtgattttcctaTGCCAGAAAGCATTGGGGAATTTCCAAAACACTGG
GATATAAACCAATATTTGAATGATTTTGCCGATGTGCATAAATTACGACG
ATATATCCATTTCAACACGACAGTCAAACGCATGTATAAAATTAACGAAA
TCTGGAACATTGAGACTGAGAATCATAAAGAATATCGAGGCAAAAACGTC
ATTGTGTGTTCTGGTGTCCATCAAAAAGCAAACACAGATCTGGAGACTGG
GTTGCTGAAGAATTTTACCGGTAAGTTTGAATCCGTTTCAGCATCCGTTT
tggattttgagattttggatAACAATAGCCTTTTTCCATGGTCCAATGGG
AAAAGGCTAGTGAATTAAGCTGAATGTAGGGCTTCATGAGAAGATTGACA
AAATGTCCAAGAGCAACTGCCCGATAAAGAAAtatggcacacaacgttgt
tgtaacgttcatctaacgttatatggacattgAACGtcagataaacgtta
aaacaacgttgtgtgtcagctgttCGATGTCATTTTCTGAATATCATTAg
ttcttcaaaaaatctttgatttttttcttgtatTGGAAAAAACTGTTCGA
GATttattttcaagcaatttacCCCCTCGAAACTGCACCTGGACtgatga
aaaatatatattcgAACATTTTAGGCGATTTACGACATTCAGGTAATCTG
AAAGAGTTCGCGGAGGAGCATCGCGGTAGGAGATTGATGATCATCGGAGG
TGGAGAGACTGCAAGTGATATTATGGATGAATGGTAAGACAATTTTAATG
AAGGAGAGAGTtacttttatcaactttttaAATAGAAGCTATTTCATTGA
CAGACTTTGGGCAGCATAGCTTTTAGGCTGcttgcatccactaacggatt
cgtgctccttacagaggatgcttaataagtgatattttctttgtccaatg
atttgccgcctttagccgatatacggttaaagacatttttagatGGCGAG
GGCTTACAACTAtagcattacgtaatgtttaaattttctgttatactacc
tggggttttgtagaggtctgcaattcagactGCATAGCCCCGGGGTCGAT
AAAAAGCCTTTTTATAAGCTGGATGGTGCGTTTGAGTGTTTCAATTTGAG
CTTTTGCATCGTAAAATAGTCCGCCAGATTCTAGTTGTTTTAGGAAGATA
AAAATGGTGGGGgcaatctttttgtttagaaataagGGATAGCGACCCGC
GTGATTTTCACTCAAACTTCAGATCGAGAatgaaatatgatttttaaaaa
atatagcacgtaaaaataaaacaagcgCTACGAAGCATCATTCCAAAATC
AAACGGCGCGAGTCTTAAGGCTTCCTAAGGCTGAAGATTCTCCTCTAGCA
GTCTCTAGCCCGttttgggctttaaactcaatgggtgtAAGGATAAATAA
ACTATCGATGTGTGACAGCATGGAACTGGAACCAGCTACCAAAAGAGACT
GTTAACGCTACTAGCATCAAAGCGTTCAAGGAAGAACTAACCAAGGCATG
GATGGAACATCCATTGCGCTAGGAATCAAGATCTTTGTAATTGTAGATGA
Tagatcggtttagaggcccttgtgtgcctggactgtaaatcttcataaaa
aataataaaaaagtagCATACCTTTTTACTTCATTGTTTTCACTTGGGTG
TTATCAACGGAACATTCGCACAGTCTTTAAATCACATTAAAAGCCAAACA
AAACTCTGAAATAAGAAGGGGAAAAACAAATTGAACGgttattaaaattt
ttaatccAGAGAAGAAAGAAGCTgaccctccgatatcatcggACCGGGCG
CTAGCCCGGGATAGCTTCCTACTGCTAGATGGGgaaatcacagcgcttac
cagacattgtactcTGTGATCGCGACACATCAGAGTCGTGCTGCACGGAC
AGCACAGTACGGGAGAACCTTGCGTTCTTGCAGGTATTGAACATATGAGT
ACCATCACCACACAACATTCAATGTCCAGCATATCTCCCCaaactcttgt
atcagagtgatggtaccctattTCCCTCAcctggtatgggttgacccggg
ccaaggtacattcacttgccaagtgaatcgcagAACCGAGTGGGAATCAA
ACCCTGACTTCCAGCACGGAAATCAAGaacgatgaccactacactactgc
gccttaattttgatttttaatcttaatttttaATCCAAAAGTCTTTTAAA
TTTAATTCGTTCTTCCTTTTTGTCTTACAAAAATTTCCCTCGTATTTTAA
CCTTTACTTAAGTCGAAACACGAATATTTACATCCAAAAAAGGTCTGTTG
AAGTCCAGAAGAGGTCTCTGTAATCAGGTAATAGCTTCATTCCAAAATAC
CACAAGTTAATAAAGAGAGCTTATGGACAGTACCAAAATTTGCTGTCTGA
AACACCTGTTATGACCCATGATTCGAGGTTTAATGTTTGACCATGTTTCT
TAATAAGTGTTTAGTTTAGCTTATAGGAAGTCTGTGATCGGACTATAAAT
TTGGGGAATtggtattaaataaaaaaacaatgaactAAGGGACTGAATTC
AAGTTTGGTaaacaaactttcaaaattataatttttctcATTGCAAGGTA
CCCGAACGTGGATTCCATCATCTGGTGTATACCACGTGGTCAACATTTCT
TCCGTAAATACGCCAAACTTTTACCGAACCGTAAACCACAAGCTTTGGAT
AAAGCATCATCAAGAGCATTGAAACTTGTATCACCTCACACTAGAAGTAA
AccaggtacacgttttttataagaacatccaacattttttaagccttcCG
ATATTTTGAGGTTTAAGCCTAAAACTGTTCTCAAaaggttcttattttca
tcacttttagagattttatttccgttttcctaagaaatcgggtgttttaa
agccatcaaagccttaagctcttaacttattcttaatatttaagtcatcg
aagccttttgttcttatatagtttgttcttaaaaagaaCGTTTAGGTCTT
GTAGTGAGTAGAGACAGTTTTTAATAATGCGTAATCATACGAATGATACA
CTCATGTAtcacattttctaaaaaagtttaTTGTTGGTCTAATGAACCCC
AGTTCTTTGCTAGTTTGAGTTTGAATGACTGAATCTTAAGAAAATCTAAA
GTTAACGTTTTAAAATAGGgttaaaagatatttaatttctactctttaaa
ataagaacaggataagaacaattccaGACTCAAAgtaccaaaaaaataat
aacagtCTACAACCATGGCCagaatctattgagaatttagcttattttct
cgtttttcgaaatcggagttcgggcgagaaagtcgcttttgggctaattg
ataaatttattcgagtatttcaattcgggaggggtttatagacttccatg
caatattctgagccctattggaccattcttgaacttttggatccttagat
cctaagctcctaagtctagcgttaaaattcagagttaaaactctaccttt
ccaacctaatttagagcgctaccaaatcgtttgtggttatatgatttcgt
gggaatttcccttttttctcaaatattgtgACCGGGATTGTAACTCGTCA
AAAGTTTACtggttctttcaaaaaaaaaagagtgtactaTCAACTTGATA
GAATTCCTCCAAAACGGTTCTTTCGTGACATATTTACAGGATTTTTATAT
CTTTGTAATTGCATATTTTATTTAGGTCTAGCCTGGATTTGCAGATGGAC
AACAAACGGATCAATCACAGCCTACCAAGGTCATGGAATCCCCGAATTCC
GAAACGAGGCTCCTTTCTTTCATTCGTTTATCAATAAACACGCGCATGCG
TTAGATTATATCGATTATGAAAAAGTCATTCCGAAAGGACCAATAGAATG
TGTCACAGGAAATCACGTGATCTTTAAAGACGGGTCATCAGTTGATGTGG
ATGTTATCATACAGTGTACTGGATACGAAGTCTCATTTCCGTTTCTACCA
AAAACACAACAACTCAAGCCTACCGAGTTATACAAATTCGTTTTCAATCC
CGAAGACCCTACACTCTCGTTTGTCGGTTTCGTTCGGCCTATAGTCGGCT
CGATTCCCGGTATAGCGGAAATGAATGCTCGTTGGGTTTGTCGGACGATA
AGTGGGCGTGTTCCAATGGCGTGTAAAATTGAACGGCATAGGGCGATATA
TGAAGATCAAAAATTTTGGTTAGAATACTTTGATAAAACGTCACATCGGA
TTGGAACTTTAGTGGAAGGTTACACCTATTTGGACGATATTGCTAAATTA
AGTCAGTGCTATCCAGATTATTGGTCACTGTTTAAACGGAACCCGACTGC
GGCGATTACCGCTTACTTTGCACCTTATAACGGTTGCTCTTACAGGCTAA
ACGAGCCACAACAAGAGGAACTAGCCTTGGAGACTTTGAAAAGACATTCG
AAAGATACAATGAACTTTTGGAATccgtttttcattttgtttttgcgATT
AATTCTGTTTGATTGGTTTTGTGATATACTTGGTGCTGTCAAATATCGAA
TTCAAACGAACCCAAGATGGCAGACCGTTCGAGAATGGAGGCTNN

Coding sequence (CDS) from alignment at sc0000329:288181..293075+

>TCONS_00019518 ID=TCONS_00019518|Name=TCONS_00019518|organism=Clytia hemisphaerica|type=CDS|length=6480bp|location=Sequence derived from alignment at sc0000329:288181..293075+ (Clytia hemisphaerica)
ATGGCAACAGTGGAAGaggtcaatgacgtcatcataataGGAGCAGGTTG
GTCTGGTCTTTTATCATGTAAATATGCTCTGGAAGAGAAACTTTCAGTCC
GGGTACTCGAGAAACGAGAAGACATAGGCGGAGTATGGAAATTCTCTGAC
GACCCTAATGTCACGACCGTAATGCGGAACTCGACCACATCAAGCTCAAG
TACGGTTACGGaaatcagtgattttcctaTGCCAGAAAGCATTGGGGAAT
TTCCAAAACACTGGGATATAAACCAATATTTGAATGATTTTGCCGATGTG
CATAAATTACGACGATATATCCATTTCAACACGACAGTCAAACGCATGTA
TAAAATTAACGAAATCTGGAACATTGAGACTGAGAATCATAAAGAATATC
GAGGCAAAAACGTCATTGTGTGTTCTGGTGTCCATCAAAAAGCAAACACA
GATCTGGAGACTGGGTTGCTGAAGAATTTTACCGGCGATTTACGACATTC
AGGTAATCTGAAAGAGTTCGCGGAGGAGCATCGCGGTAGGAGATTGATGA
TCATCGGAGGTGGAGAGACTGCAAGTGATATTATGGATGAATGGTACCCG
AACGTGGATTCCATCATCTGGTGTATACCACGTGGTCAACATTTCTTCCG
TAAATACGCCAAACTTTTACCGAACCGTAAACCACAAGCTTTGGATAAAG
CATCATCAAGAGCATTGAAACTTGTATCACCTCACACTAGAAGTAAAcca
gGTCTAGCCTGGATTTGCAGATGGACAACAAACGGATCAATCACAGCCTA
CCAAGGTCATGGAATCCCCGAATTCCGAAACGAGGCTCCTTTCTTTCATT
CGTTTATCAATAAACACGCGCATGCGTTAGATTATATCGATTATGAAAAA
GTCATTCCGAAAGGACCAATAGAATGTGTCACAGGAAATCACGTGATCTT
TAAAGACGGGTCATCAGTTGATGTGGATGTTATCATACAGTGTACTGGAT
ACGAAGTCTCATTTCCGTTTCTACCAAAAACACAACAACTCAAGCCTACC
GAGTTATACAAATTCGTTTTCAATCCCGAAGACCCTACACTCTCGTTTGT
CGGTTTCGTTCGGCCTATAGTCGGCTCGATTCCCGGTATAGCGGAAATGA
ATGCTCGTTGGGTTTGTCGGACGATAAGTGGGCGTGTTCCAATGGCGTGT
AAAATTGAACGGCATAGGGCGATATATGAAGATCAAAAATTTTGGTTAGA
ATACTTTGATAAAACGTCACATCGGATTGGAACTTTAGTGGAAGGTTACA
CCTATTTGGACGATATTGCTAAATTAAGTCAGTGCTATCCAGATTATTGG
TCACTGTTTAAACGGAACCCGACTGCGGCGATTACCGCTTACTTTGCACC
TTATAACGGTTGCTCTTACAGGCTAAACGAGCCACAACAAGAGGAACTAG
CCTTGGAGACTTTGAAAAGACATTCGAAAGATACAATGAACTTTTGGAAT
ccgtttttcattttgtttttgcgATTAATTCTGTTTGATTGGTTTTGTGA
TATACTTGGTGCTGTCAAATATCGAATTCAAACGAACCCAAGATGGCAGA
CCGTTCGAGAATGGAGGCTNATGGCAACAGTGGAAGaggtcaatgacgtc
atcataataGGAGCAGGTTGGTCTGGTCTTTTATCATGTAAATATGCTCT
GGAAGAGAAACTTTCAGTCCGGGTACTCGAGAAACGAGAAGACATAGGCG
GAGTATGGAAATTCTCTGACGACCCTAATGTCACGACCGTAATGCGGAAC
TCGACCACATCAAGCTCAAGTACGGTTACGGaaatcagtgattttcctaT
GCCAGAAAGCATTGGGGAATTTCCAAAACACTGGGATATAAACCAATATT
TGAATGATTTTGCCGATGTGCATAAATTACGACGATATATCCATTTCAAC
ACGACAGTCAAACGCATGTATAAAATTAACGAAATCTGGAACATTGAGAC
TGAGAATCATAAAGAATATCGAGGCAAAAACGTCATTGTGTGTTCTGGTG
TCCATCAAAAAGCAAACACAGATCTGGAGACTGGGTTGCTGAAGAATTTT
ACCGGCGATTTACGACATTCAGGTAATCTGAAAGAGTTCGCGGAGGAGCA
TCGCGGTAGGAGATTGATGATCATCGGAGGTGGAGAGACTGCAAGTGATA
TTATGGATGAATGGTACCCGAACGTGGATTCCATCATCTGGTGTATACCA
CGTGGTCAACATTTCTTCCGTAAATACGCCAAACTTTTACCGAACCGTAA
ACCACAAGCTTTGGATAAAGCATCATCAAGAGCATTGAAACTTGTATCAC
CTCACACTAGAAGTAAAccagGTCTAGCCTGGATTTGCAGATGGACAACA
AACGGATCAATCACAGCCTACCAAGGTCATGGAATCCCCGAATTCCGAAA
CGAGGCTCCTTTCTTTCATTCGTTTATCAATAAACACGCGCATGCGTTAG
ATTATATCGATTATGAAAAAGTCATTCCGAAAGGACCAATAGAATGTGTC
ACAGGAAATCACGTGATCTTTAAAGACGGGTCATCAGTTGATGTGGATGT
TATCATACAGTGTACTGGATACGAAGTCTCATTTCCGTTTCTACCAAAAA
CACAACAACTCAAGCCTACCGAGTTATACAAATTCGTTTTCAATCCCGAA
GACCCTACACTCTCGTTTGTCGGTTTCGTTCGGCCTATAGTCGGCTCGAT
TCCCGGTATAGCGGAAATGAATGCTCGTTGGGTTTGTCGGACGATAAGTG
GGCGTGTTCCAATGGCGTGTAAAATTGAACGGCATAGGGCGATATATGAA
GATCAAAAATTTTGGTTAGAATACTTTGATAAAACGTCACATCGGATTGG
AACTTTAGTGGAAGGTTACACCTATTTGGACGATATTGCTAAATTAAGTC
AGTGCTATCCAGATTATTGGTCACTGTTTAAACGGAACCCGACTGCGGCG
ATTACCGCTTACTTTGCACCTTATAACGGTTGCTCTTACAGGCTAAACGA
GCCACAACAAGAGGAACTAGCCTTGGAGACTTTGAAAAGACATTCGAAAG
ATACAATGAACTTTTGGAATccgtttttcattttgtttttgcgATTAATT
CTGTTTGATTGGTTTTGTGATATACTTGGTGCTGTCAAATATCGAATTCA
AACGAACCCAAGATGGCAGACCGTTCGAGAATGGAGGCTNATGGCAACAG
TGGAAGaggtcaatgacgtcatcataataGGAGCAGGTTGGTCTGGTCTT
TTATCATGTAAATATGCTCTGGAAGAGAAACTTTCAGTCCGGGTACTCGA
GAAACGAGAAGACATAGGCGGAGTATGGAAATTCTCTGACGACCCTAATG
TCACGACCGTAATGCGGAACTCGACCACATCAAGCTCAAGTACGGTTACG
GaaatcagtgattttcctaTGCCAGAAAGCATTGGGGAATTTCCAAAACA
CTGGGATATAAACCAATATTTGAATGATTTTGCCGATGTGCATAAATTAC
GACGATATATCCATTTCAACACGACAGTCAAACGCATGTATAAAATTAAC
GAAATCTGGAACATTGAGACTGAGAATCATAAAGAATATCGAGGCAAAAA
CGTCATTGTGTGTTCTGGTGTCCATCAAAAAGCAAACACAGATCTGGAGA
CTGGGTTGCTGAAGAATTTTACCGGCGATTTACGACATTCAGGTAATCTG
AAAGAGTTCGCGGAGGAGCATCGCGGTAGGAGATTGATGATCATCGGAGG
TGGAGAGACTGCAAGTGATATTATGGATGAATGGTACCCGAACGTGGATT
CCATCATCTGGTGTATACCACGTGGTCAACATTTCTTCCGTAAATACGCC
AAACTTTTACCGAACCGTAAACCACAAGCTTTGGATAAAGCATCATCAAG
AGCATTGAAACTTGTATCACCTCACACTAGAAGTAAAccagGTCTAGCCT
GGATTTGCAGATGGACAACAAACGGATCAATCACAGCCTACCAAGGTCAT
GGAATCCCCGAATTCCGAAACGAGGCTCCTTTCTTTCATTCGTTTATCAA
TAAACACGCGCATGCGTTAGATTATATCGATTATGAAAAAGTCATTCCGA
AAGGACCAATAGAATGTGTCACAGGAAATCACGTGATCTTTAAAGACGGG
TCATCAGTTGATGTGGATGTTATCATACAGTGTACTGGATACGAAGTCTC
ATTTCCGTTTCTACCAAAAACACAACAACTCAAGCCTACCGAGTTATACA
AATTCGTTTTCAATCCCGAAGACCCTACACTCTCGTTTGTCGGTTTCGTT
CGGCCTATAGTCGGCTCGATTCCCGGTATAGCGGAAATGAATGCTCGTTG
GGTTTGTCGGACGATAAGTGGGCGTGTTCCAATGGCGTGTAAAATTGAAC
GGCATAGGGCGATATATGAAGATCAAAAATTTTGGTTAGAATACTTTGAT
AAAACGTCACATCGGATTGGAACTTTAGTGGAAGGTTACACCTATTTGGA
CGATATTGCTAAATTAAGTCAGTGCTATCCAGATTATTGGTCACTGTTTA
AACGGAACCCGACTGCGGCGATTACCGCTTACTTTGCACCTTATAACGGT
TGCTCTTACAGGCTAAACGAGCCACAACAAGAGGAACTAGCCTTGGAGAC
TTTGAAAAGACATTCGAAAGATACAATGAACTTTTGGAATccgtttttca
ttttgtttttgcgATTAATTCTGTTTGATTGGTTTTGTGATATACTTGGT
GCTGTCAAATATCGAATTCAAACGAACCCAAGATGGCAGACCGTTCGAGA
ATGGAGGCTNATGGCAACAGTGGAAGaggtcaatgacgtcatcataataG
GAGCAGGTTGGTCTGGTCTTTTATCATGTAAATATGCTCTGGAAGAGAAA
CTTTCAGTCCGGGTACTCGAGAAACGAGAAGACATAGGCGGAGTATGGAA
ATTCTCTGACGACCCTAATGTCACGACCGTAATGCGGAACTCGACCACAT
CAAGCTCAAGTACGGTTACGGaaatcagtgattttcctaTGCCAGAAAGC
ATTGGGGAATTTCCAAAACACTGGGATATAAACCAATATTTGAATGATTT
TGCCGATGTGCATAAATTACGACGATATATCCATTTCAACACGACAGTCA
AACGCATGTATAAAATTAACGAAATCTGGAACATTGAGACTGAGAATCAT
AAAGAATATCGAGGCAAAAACGTCATTGTGTGTTCTGGTGTCCATCAAAA
AGCAAACACAGATCTGGAGACTGGGTTGCTGAAGAATTTTACCGGCGATT
TACGACATTCAGGTAATCTGAAAGAGTTCGCGGAGGAGCATCGCGGTAGG
AGATTGATGATCATCGGAGGTGGAGAGACTGCAAGTGATATTATGGATGA
ATGGTACCCGAACGTGGATTCCATCATCTGGTGTATACCACGTGGTCAAC
ATTTCTTCCGTAAATACGCCAAACTTTTACCGAACCGTAAACCACAAGCT
TTGGATAAAGCATCATCAAGAGCATTGAAACTTGTATCACCTCACACTAG
AAGTAAAccagGTCTAGCCTGGATTTGCAGATGGACAACAAACGGATCAA
TCACAGCCTACCAAGGTCATGGAATCCCCGAATTCCGAAACGAGGCTCCT
TTCTTTCATTCGTTTATCAATAAACACGCGCATGCGTTAGATTATATCGA
TTATGAAAAAGTCATTCCGAAAGGACCAATAGAATGTGTCACAGGAAATC
ACGTGATCTTTAAAGACGGGTCATCAGTTGATGTGGATGTTATCATACAG
TGTACTGGATACGAAGTCTCATTTCCGTTTCTACCAAAAACACAACAACT
CAAGCCTACCGAGTTATACAAATTCGTTTTCAATCCCGAAGACCCTACAC
TCTCGTTTGTCGGTTTCGTTCGGCCTATAGTCGGCTCGATTCCCGGTATA
GCGGAAATGAATGCTCGTTGGGTTTGTCGGACGATAAGTGGGCGTGTTCC
AATGGCGTGTAAAATTGAACGGCATAGGGCGATATATGAAGATCAAAAAT
TTTGGTTAGAATACTTTGATAAAACGTCACATCGGATTGGAACTTTAGTG
GAAGGTTACACCTATTTGGACGATATTGCTAAATTAAGTCAGTGCTATCC
AGATTATTGGTCACTGTTTAAACGGAACCCGACTGCGGCGATTACCGCTT
ACTTTGCACCTTATAACGGTTGCTCTTACAGGCTAAACGAGCCACAACAA
GAGGAACTAGCCTTGGAGACTTTGAAAAGACATTCGAAAGATACAATGAA
CTTTTGGAATccgtttttcattttgtttttgcgATTAATTCTGTTTGATT
GGTTTTGTGATATACTTGGTGCTGTCAAATATCGAATTCAAACGAACCCA
AGATGGCAGACCGTTCGAGAATGGAGGCTN

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010971	XLOC_010971	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00019518-exon-sc0000329-1491911889:288181..288700	TCONS_00019518-exon-sc0000329-1491911889:288181..288700	Clytia hemisphaerica	exon
TCONS_00019518-exon-sc0000329-1510915933:288181..288700	TCONS_00019518-exon-sc0000329-1510915933:288181..288700	Clytia hemisphaerica	exon
TCONS_00019518-exon-sc0000329-1575043694:288181..288700	TCONS_00019518-exon-sc0000329-1575043694:288181..288700	Clytia hemisphaerica	exon
TCONS_00019518-exon-sc0000329-1491911889:289105..289213	TCONS_00019518-exon-sc0000329-1491911889:289105..289213	Clytia hemisphaerica	exon
TCONS_00019518-exon-sc0000329-1510915933:289105..289213	TCONS_00019518-exon-sc0000329-1510915933:289105..289213	Clytia hemisphaerica	exon
TCONS_00019518-exon-sc0000329-1575043694:289105..289213	TCONS_00019518-exon-sc0000329-1575043694:289105..289213	Clytia hemisphaerica	exon
TCONS_00019518-exon-sc0000329-1491911889:291078..291235	TCONS_00019518-exon-sc0000329-1491911889:291078..291235	Clytia hemisphaerica	exon
TCONS_00019518-exon-sc0000329-1510915933:291078..291235	TCONS_00019518-exon-sc0000329-1510915933:291078..291235	Clytia hemisphaerica	exon
TCONS_00019518-exon-sc0000329-1575043694:291078..291235	TCONS_00019518-exon-sc0000329-1575043694:291078..291235	Clytia hemisphaerica	exon
TCONS_00019518-exon-sc0000329-1491911889:292206..293075	TCONS_00019518-exon-sc0000329-1491911889:292206..293075	Clytia hemisphaerica	exon
TCONS_00019518-exon-sc0000329-1510915933:292206..293075	TCONS_00019518-exon-sc0000329-1510915933:292206..293075	Clytia hemisphaerica	exon
TCONS_00019518-exon-sc0000329-1575043694:292206..293075	TCONS_00019518-exon-sc0000329-1575043694:292206..293075	Clytia hemisphaerica	exon

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00019518-protein	TCONS_00019518-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000329	supercontig	sc0000329:288181..293075 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.147007	0.167248	0.055483	0.0271407	0.0660825	0	0.315002	0.648782	0.660694	1.15084	0.794336	0.832201	13.3661	7.94337	2.64339	3.001	1.93126	1.64014	12.9034	16.0876	0.686985	0.797277	0.365204	0.587426	0.4472	0.35216	8.23102	8.06728	0.299139	0.277068

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000960	Flavin_mOase
IPR020946	Flavin_mOase-like
IPR023753	FAD/NAD-binding_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

Vocabulary: **Molecular Function**
Term	Definition
GO:0004499	N,N-dimethylaniline monooxygenase activity
GO:0050660	flavin adenine dinucleotide binding
GO:0050661	NADP binding
GO:0016491	oxidoreductase activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
molecular_function	GO:0050660	flavin adenine dinucleotide binding
molecular_function	GO:0050661	NADP binding
molecular_function	GO:0004499	N,N-dimethylaniline monooxygenase activity
molecular_function	GO:0016491	oxidoreductase activity

Blast

[Close]

BLAST of TCONS_00019518 vs. Swiss-Prot (Human)
Match: FMO2 (Dimethylaniline monooxygenase [N-oxide-forming] 2 OS=Homo sapiens GN=FMO2 PE=1 SV=4)

HSP 1 Score: 148.673 bits (374), Expect = 7.723e-39
Identity = 140/481 (29.11%), Postives = 225/481 (46.78%), Query Frame = 1

Query:   64 VIIIGAGWSGLLSCKYALEEKLSVRVLEKREDIGGVWKFSD--DPNXXXXXXXXXXXXXXXXXXXXDFPMPESIGEFPKHWDINQYLNDFADVHKLRRYIHFNTTVKRMYKINEI-----WNIETE-NHKEYRG--KNVIVCSGVHQKANTDLET-GLLKNFTGDLRHSGNLKEFAEEHRGRRLMIIGGGETASDIMDEWYPNVDSIIWCIPRGQHFFRKYAKLLPNRKP--QALDKASSRALKLVSPHTRSKPGLAWICRWTTNGSITAYQGHGIPEFRNEAPFFHSFINKHAHALDYIDYEKVIPKGPIECVTGNHVIFKDGS-SVDVDVIIQCTGYEVSFPFLPKTQ---QLKPTELYKFVF--NPEDPTLSFVGFVRPIVGSIPGIAEMNARWVCRTISGRVPMACKIERHRAIYEDQKFWLEYFDKTSHRIGTLVEGYT-YLDDIAKLSQCYPDYWSLFKRNPTAAITAYFAPYNG 1446
            V +IGAG SGL+S K  ++E L     E+ EDIGGVW+F +  +    ++ ++  T++S  ++  SDFPMPE    F  +  + +Y   FA    L +YI F TTV  + K  +      W + T+ N KE       V+VCSG H   +  L++   ++ F G   HS   K   +   G+R+++IG G + SDI  E   N   +      G     + ++   +  P            L+ V P T  K    W+     N     ++ +G+ E +N+       +N    +       KV  K  ++ +T    IF+DG+   ++DVII  TGY  SFPFL  +    +     LYK++F  + +  TL+ +G ++P+ GSI   AE+ ARWV R   G   +  +      I +  +  ++ F ++  +  TL   Y  YLD++A      PD+ SL  ++P  A+  YF P N 
Sbjct:    5 VAVIGAGVSGLISLKCCVDEGLEPTCFERTEDIGGVWRFKENVEDGRASIYQSVVTNTSKEMSCFSDFPMPEDFPNFLHNSKLLEYFRIFAKKFDLLKYIQFQTTVLSVRKCPDFSSSGQWKVVTQSNGKEQSAVFDAVMVCSGHHILPHIPLKSFPGMERFKGQYFHSRQYKH-PDGFEGKRILVIGMGNSGSDIAVELSKNAAQVFISTRHGTWVMSRISE---DGYPWDSVFHTRFRSMLRNVLPRTAVK----WMIEQQMNRWFN-HENYGL-EPQNKYIMKEPVLNDDVPSRLLCGAIKV--KSTVKELTETSAIFEDGTVEENIDVIIFATGYSFSFPFLEDSLVKVENNMVSLYKYIFPAHLDKSTLACIGLIQPL-GSIFPTAELQARWVTRVFKGLCSLPSERTMMMDIIKRNEKRIDLFGESQSQ--TLQTNYVDYLDELALEIGAKPDFCSLLFKDPKLAVRLYFGPCNS 470

The following BLAST results are available for this feature:

BLAST of TCONS_00019518 vs. Swiss-Prot (Human)

BLAST of TCONS_00019518 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FMO2	7.723e-39	29.11	Dimethylaniline monooxygenase [N-oxide-forming] 2 ...	[more]

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TCONS_00019518 (transcript) - C. hemisphaerica