TCONS_00019630 (transcript) - C. hemisphaerica

Overview
NameTCONS_00019630
Unique NameTCONS_00019630
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1407

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00019630 ID=TCONS_00019630|Name=TCONS_00019630|organism=Clytia hemisphaerica|type=transcript|length=1407bp
CTGTACTCTCTAtatttttagcttgaaataaaaacataaacaatCATTAA
TAAATAAACTAAACAACTATGGAGCACTGTAGAAAGTTGGTTATAGTTGG
AGATGACTCGATTGGGAAAACCAGCCTGTTATATGTTTATAAAAGTAAAC
AATTCCTAACCGACTATGTTCCAGAGGTGTTTGTTGAGGGTGGTTACTTA
GCTAAAATCACACTGGATATTGACAACTCTGTTGAATTAGTTTTTTGGGA
TACCATTGGTCATAGACAGTATGATCGCTTACGACCTTTATCTTATTATG
ATACAGATGTATTACTGTTATGTTTTGCTGTTGAACAGCCAGACAGTTTA
AAAAACATAAGCGAAAAATGGGCAGACGAACCTAAAAAAAGATTGTCAAC
AAACATTCATAACTGAACAATATGAATAACTACGAAGCACAATAAAAAGT
TGGTTATAGTTGGAGATGACTCGATTGGGAAAACAAGCTTGTTATGGGTC
TATGTACGCAAACAATTTCCAACCGACTGGATTCCAACTGTGTTTGAGAG
TTACATAGCCACAATCATATTGGATACTGATAACTTCGTTGAATTAGCTT
TTTGGGATACTGCTGGTCAAAGACAGTATGATCGCTTAAGACCTTTATCT
TATCACTACGTTGATGTATTTCTGTTATGTTTTGCTGTTGAACAGCCAGA
CAGTTTAAAAAACATTGAAGAAAAGTGGGCAAACGAAGTCAGACATTTTT
GTCCCAAAGTTCCTATAATACTTGTTGCAAATAAAACTGATCTTCGAGAT
GATGATCAGATAATATTTAATTTGAACGAGTCAAATCAAGAACCTATTCA
GACGAAACAAGGCCAAGAAATGGCCCAGAAAATTGGTGCTTTCACATATT
TAGAATGCTCAGCAAAGTTGAACGAAGGGGTTAAAGAAGTTTTTGATACA
GCAGCGAGGGCTTCTTTGCAATCCATCAAAAAACGAGGTTGTGTGTTGCT
ATAATAAGgagatattgagatttattaacccgagttGAATATAAATTACC
GAGGGCTAATAAATCtaataaccaacgaaaacctattaTATGTTTTAATA
ATATATCCAAAGGCAAAATTAAAACATTATGTAAATAGAGTCTgcctcaa
aataatttgcagctgagacaaaaatggctgtaacttttggtagaattcga
atcaagcgATTTTATGCTTGTTGAAAAAATACTTGAGtgaaatattatca
agtaaaaaaaattgaaaaataaagaaaaatgaaaatgaaaaatgaagaag
aaaaaaatcaacttcttgtagaaatgtggtataactaccattttcacagg
agtgattcttcaatcttagatcatcatcactgtgaaaaactttttcaaaa
atattca
Run BLAST on NCBI

protein sequence of TCONS_00019630-protein

>TCONS_00019630-protein ID=TCONS_00019630-protein|Name=TCONS_00019630-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
MEHCRKLVIVGDDSIGKTSLLYVYKSKQFLTDYVPEVFVEGGYLAKITLD
IDNSVELVFWDTIGHRQYDRLRPLSYYDTDVLLLCFAVEQPDSLKNISEK
WADEPKKRLSTNIHN
Run BLAST on NCBI

transcript from alignment at sc0000332:215098..217002-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00019630 ID=TCONS_00019630|Name=TCONS_00019630|organism=Clytia hemisphaerica|type=transcript|length=1905bp|location=Sequence derived from alignment at sc0000332:215098..217002- (Clytia hemisphaerica)
CTGTACTCTCTATATTTTTAGCTTGAAATAAAAACATAAACAATCATTAA
TAAATAAACTAAACAACTATGGAGCACTGTAGAAAGTTGGTTATAGTTGG
AGATGACTCGATTGGGAAAACCAGCCTGTTATATGTTTATAAAAGTAAAC
AATTCCTAACCGACTATGTTCCAGAGGTGTTTGTTGAGGGTGGTTACTTA
GCTAAAATCACACTGGATATTGACAACTCTGTTGAATTAGTTTTTTGGGA
TACCATTGGTCATAGACAGTATGATCGCTTACGACCTTTATCTTATTATG
ATACAGATGTATTACTGTTATGTTTTGCTGTTGAACAGCCAGACAGTTTA
AAAAACATAAGCGAAAAATGGGCAGACGAAGTAAGACATTTTTGTCCCAA
AGTTCCTATAATACTTGTTGCAAATAAAACTGATCTGAGATATGATGATC
AGATAATATTTAATTTGAACGAGTCAAATCAAGAACCTATTCAGACGAAA
CAAGGCCAAGAAATGGCTCAGAAAATAGGTGCTTTCGCATATTTAGAATG
CTCGGCAAAGTTGAATGAAGGGGTTAAAGAAGTTTTAGATACAGCAGCAA
GAGCAGCTTCTTTGCAATCCAACAAAAAACGAAGAGGGAACAGTAGAGGT
TGCGTTTTGCTGTGATCAAATTAAAATATTTTCCTATCCATAGGTTCTCA
TAATCATTCAAAATGACTCCCTGATTTTTGCCTTAGACACTCATTTTTAA
ACAAATAACATCAAATTTACCTGAATTTACATCAAAAGGACACCACCAAT
TATTATTTTTTTATTTTTTCCCAGAACTGACCTTGCGAATAAGTCTTGTT
ATATAATACATACTGTCTATAATTTTAGCCTAAAAAAAGATTGTCAACAA
ACATTCATAACTGAACAATATGAATAACTACGAAGCACAATAAAAAGTTG
GTTATAGTTGGAGATGACTCGATTGGGAAAACAAGCTTGTTATGGGTCTA
TGTACGCAAACAATTTCCAACCGACTGGATTCCAACTGTGTTTGAGAGTT
ACATAGCCACAATCATATTGGATACTGATAACTTCGTTGAATTAGCTTTT
TGGGATACTGCTGGTCAAAGACAGTATGATCGCTTAAGACCTTTATCTTA
TCACTACGTTGATGTATTTCTGTTATGTTTTGCTGTTGAACAGCCAGACA
GTTTAAAAAACATTGAAGAAAAGTGGGCAAACGAAGTCAGACATTTTTGT
CCCAAAGTTCCTATAATACTTGTTGCAAATAAAACTGATCTTCGAGATGA
TGATCAGATAATATTTAATTTGAACGAGTCAAATCAAGAACCTATTCAGA
CGAAACAAGGCCAAGAAATGGCCCAGAAAATTGGTGCTTTCACATATTTA
GAATGCTCAGCAAAGTTGAACGAAGGGGTTAAAGAAGTTTTTGATACAGC
AGCGAGGGCTTCTTTGCAATCCATCAAAAAACGAGGTTGTGTGTTGCTAT
AATAAGGAGATATTGAGATTTATTAACCCGAGTTGAATATAAATTACCGA
GGGCTAATAAATCTAATAACCAACGAAAACCTATTATATGTTTTAATAAT
ATATCCAAAGGCAAAATTAAAACATTATGTAAATAGAGTCTGCCTCAAAA
TAATTTGCAGCTGAGACAAAAATGGCTGTAACTTTTGGTAGAATTCGAAT
CAAGCGATTTTATGCTTGTTGAAAAAATACTTGAGTGAAATATTATCAAG
TAAAAAAAATTGAAAAATAAAGAAAAATGAAAATGAAAAATGAAGAAGAA
AAAAATCAACTTCTTGTAGAAATGTGGTATAACTACCATTTTCACAGGAG
TGATTCTTCAATCTTAGATCATCATCACTGTGAAAAACTTTTTCAAAAAT
ATTCA

Coding sequence (CDS) from alignment at sc0000332:215098..217002-

>TCONS_00019630 ID=TCONS_00019630|Name=TCONS_00019630|organism=Clytia hemisphaerica|type=CDS|length=696bp|location=Sequence derived from alignment at sc0000332:215098..217002- (Clytia hemisphaerica)
CCTAAAAAAAGATTGTCAACAAACATTCATAACTGAATGGAGCACTGTAG
AAAGTTGGTTATAGTTGGAGATGACTCGATTGGGAAAACCAGCCTGTTAT
ATGTTTATAAAAGTAAACAATTCCTAACCGACTATGTTCCAGAGGTGTTT
GTTGAGGGTGGTTACTTAGCTAAAATCACACTGGATATTGACAACTCTGT
TGAATTAGTTTTTTGGGATACCATTGGTCATAGACAGTATGATCGCTTAC
GACCTTTATCTTATTATGATACAGATGTATTACTGTTATGTTTTGCTGTT
GAACAGCCAGACAGTTTAAAAAACATAAGCGAAAAATGGGCAGACGAACC
TAAAAAAAGATTGTCAACAAACATTCATAACTGAATGGAGCACTGTAGAA
AGTTGGTTATAGTTGGAGATGACTCGATTGGGAAAACCAGCCTGTTATAT
GTTTATAAAAGTAAACAATTCCTAACCGACTATGTTCCAGAGGTGTTTGT
TGAGGGTGGTTACTTAGCTAAAATCACACTGGATATTGACAACTCTGTTG
AATTAGTTTTTTGGGATACCATTGGTCATAGACAGTATGATCGCTTACGA
CCTTTATCTTATTATGATACAGATGTATTACTGTTATGTTTTGCTGTTGA
ACAGCCAGACAGTTTAAAAAACATAAGCGAAAAATGGGCAGACGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011044XLOC_011044Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019630-proteinTCONS_00019630-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00019630-exon-sc0000332-1575043694:216623..217002TCONS_00019630-exon-sc0000332-1575043694:216623..217002Clytia hemisphaericaexon
TCONS_00019630-exon-sc0000332-1575043694:215098..216124TCONS_00019630-exon-sc0000332-1575043694:215098..216124Clytia hemisphaericaexon
TCONS_00019630-exon-sc0000332-1510915933:216623..217002TCONS_00019630-exon-sc0000332-1510915933:216623..217002Clytia hemisphaericaexon
TCONS_00019630-exon-sc0000332-1510915933:215098..216124TCONS_00019630-exon-sc0000332-1510915933:215098..216124Clytia hemisphaericaexon
TCONS_00019630-exon-sc0000332-1491911889:216623..217002TCONS_00019630-exon-sc0000332-1491911889:216623..217002Clytia hemisphaericaexon
TCONS_00019630-exon-sc0000332-1491911889:215098..216124TCONS_00019630-exon-sc0000332-1491911889:215098..216124Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000332supercontigsc0000332:215098..217002 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.95524	2.40325	1.27546	0.147942	10.3708	5.81181	3.63242	4.45174	2.90276	4.03587	7.71002	0.62629	1.30879	0	1.0403	2.08374	1.64355	2.77974	2.09234	1.31377	2.12292	3.09483	5.47401	6.30382	1.54822	1.15671	3.1669	1.50608	4.43019	4.84163
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR003578Small_GTPase_Rho
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005622 intracellular
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
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BLAST of TCONS_00019630 vs. Swiss-Prot (Human)
Match: RHOA (Transforming protein RhoA OS=Homo sapiens GN=RHOA PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.688e-70
Identity = 107/187 (57.22%), Postives = 139/187 (74.33%), Query Frame = 3 
Query:  450 LVIVGDDSIGKTSLLWVYVRKQFPTDWIPTVFESYIATIILDTDNFVELAFWDTAGQRQYDRLRPLSYHYVDVFLLCFAVEQPDSLKNIEEKWANEVRHFCPKVPIILVANKTDLRDDDQIIFNLNESNQEPIQTKQGQEMAQKIGAFTYLECSAKLNEGVKEVFDTAARASLQS---IKKRGCVLL 1001
            LVIVGD + GKT LL V+ + QFP  ++PTVFE+Y+A I +D    VELA WDTAGQ  YDRLRPLSY   DV L+CF+++ PDSL+NI EKW  EV+HFCP VPIILV NK DLR+D+     L +  QEP++ ++G++MA +IGAF Y+ECSAK  +GV+EVF+ A RA+LQ+    KK GC++L
Sbjct:    8 LVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQ-VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQARRGKKKSGCLVL 193

HSP 2 Score: 113.235 bits (282), Expect = 7.409e-29
Identity = 58/102 (56.86%), Postives = 69/102 (67.65%), Query Frame = 3 
Query:   81 RKLVIVGDDSIGKTSLLYVYKSKQFLTDYVPEVFVEGGYLAKITLDIDNSVELVFWDTIGHRQYDRLRPLSYYDTDVLLLCFAVEQPDSLKNISEKWADEPK 386
            +KLVIVGD + GKT LL V+   QF   YVP VF    Y+A I +D    VEL  WDT G   YDRLRPLSY DTDV+L+CF+++ PDSL+NI EKW  E K
Sbjct:    6 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF--ENYVADIEVD-GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK 104
The following BLAST results are available for this feature:
BLAST of TCONS_00019630 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RHOA1.688e-7057.22Transforming protein RhoA OS=Homo sapiens GN=RHOA ... [more]
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