TCONS_00020016 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020016
Unique NameTCONS_00020016
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1863

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020016 ID=TCONS_00020016|Name=TCONS_00020016|organism=Clytia hemisphaerica|type=transcript|length=1863bp
GAACAAGGACATTAAAGTGCAACAAAAAGAGAAACATTCAAACTGTCAGC
TTTTGAAGTACTTACAAAATACAAGAGGACTTACAATACAAGAATAGTAC
TACGAATATAGCCGGAATATAGATATAAAACTTTCGACTTATTGATCAGA
TTTTGTTACGTCAGAACATTCAAATATAATGGAGGTTCAGGATTGTAATG
AGCAACAGAATGAATCTGGAGAATCTCCAGAAACTATTAATGAAAGGAGA
GCGTTGAAAAGTTCTCTCTCTGATAGTGGAAATACTTCACCGAAAGCTAC
TCCTGATATTTCCAAAACTGAAGAATCCAAAACTACTCCTTGTGAAGTCT
CAAAGACTGAaggaaccattgagtttcaattaTACAAGAGACGTTGGATA
GTGCTAGCTGTCTTTTCCTTTATTTCCATGTCTAATGAAGTGATCTGGAT
CAGTTTATCTTCCATCACCAGTGTGGTCAAAGAGTATTATAATGTCGATT
ATTTGGCTGTTAACTGGTTATCCATGATCTATATGCTTTTCTATGTATTC
GTTTTCTTAGCTGCTTTAGCTCTTGACCGATTGGGACTCAAGTTTACCAT
AATGATTGGTGCTGTACTCAATGGTTTAGGAAGTTGTTTACGTTTGATTG
GTACAAACAGAGATGGGTTTATCTTCGTTTTTCTTGGAAACGCCTCAGCC
GCACTTGCACaatgttttattctttttgtacCTCCCTCGTTAGCTGCAAC
TTGGTTTGGTGAGAATGAACGCGCTACCGCTTCTGCCTTGGGCGTTTTGA
TGAACATGATGGGCGTGGCTATTGGATTCTTAATGGGTGGTACTATGGTT
CCAGGCACTCAAGATTATGATGGTGAAGTTCGAGATGGAATGTTAAAAAC
ACTTCTAATTCAAGCTATATTCTGTACAGTCATGGTCATTCTTTGCCTGA
TTTTGGTTCATGATTTTCCTAAATCACCACCGAGTATGTCTCAACTCCTG
CTCATCCAAAATAAACAGCGAAAActtgaacaaaagaaaaagaataagaA
TATTTCTAAGGGAAAACAAATTGAATCGATTGCAGACGAAAACCAGCATA
TgaatttcaaaacttcactcGCATTACTGGTCAAGGATGTTAATTTTCAC
TTAGTAGCCCAAGCTTATGGGATTTATTTTGGTTTATTTGGCGCCTACAA
CACCGTTCTGAACCAAATGTGTATGAACCATTTCCCAGGCAAAGAACAAG
AAATCGGATTAATGGGTTTCACATCGGTTATTCTAGGATTAATCGGAATT
CTCTTAGCCGGAATATGGCTAGATCGTACGCGATGCTATAAGCTCGTATC
AATTGGGACATTCATTGCTTGTAGTGTATCCTTACTCACCTTTACACTGA
TTTTGATCTATAGTGGAAACTTTATACTAGTCTATGTTAGTTTCAGTATC
TTCGGATTTTTCTCATACCCGTATATGACAATTGGACTAGAACATGCTGC
TGAAATTACGTATCCCATCTCGGAAGGGTTGACTTCCGGAATCCTACTTC
TTTTTGGAAACATGTATGCTATTACTCTGACCTTTATTTGTGGTGCTATT
ATTGATAAAGGCAGGTCAGATATTGCAGGGTACTTGATGACAGTATTGTA
TTTGGTTGGTATGGTGACAGTTATATTAATGAAAGGGGAATTAAAAAGAT
GGCGTGCAGACATATCGAATAAGAATGATGAGGGTCTGGGTACTAAAGGG
ACTGGGACGAAAGGTTCTTGTTGTATTGAATTGAAAGAAAAGTACTGACT
CAATAGATGGTTGAATTTTGCTGTTTtgtaaaatgaaactttttctcCTC
TAAGATCATAGCG
Run BLAST on NCBI

protein sequence of TCONS_00020016-protein

>TCONS_00020016-protein ID=TCONS_00020016-protein|Name=TCONS_00020016-protein|organism=Clytia hemisphaerica|type=polypeptide|length=539bp
MEVQDCNEQQNESGESPETINERRALKSSLSDSGNTSPKATPDISKTEES
KTTPCEVSKTEGTIEFQLYKRRWIVLAVFSFISMSNEVIWISLSSITSVV
KEYYNVDYLAVNWLSMIYMLFYVFVFLAALALDRLGLKFTIMIGAVLNGL
GSCLRLIGTNRDGFIFVFLGNASAALAQCFILFVPPSLAATWFGENERAT
ASALGVLMNMMGVAIGFLMGGTMVPGTQDYDGEVRDGMLKTLLIQAIFCT
VMVILCLILVHDFPKSPPSMSQLLLIQNKQRKLEQKKKNKNISKGKQIES
IADENQHMNFKTSLALLVKDVNFHLVAQAYGIYFGLFGAYNTVLNQMCMN
HFPGKEQEIGLMGFTSVILGLIGILLAGIWLDRTRCYKLVSIGTFIACSV
SLLTFTLILIYSGNFILVYVSFSIFGFFSYPYMTIGLEHAAEITYPISEG
LTSGILLLFGNMYAITLTFICGAIIDKGRSDIAGYLMTVLYLVGMVTVIL
MKGELKRWRADISNKNDEGLGTKGTGTKGSCCIELKEKY
Run BLAST on NCBI

transcript from alignment at sc0000345:259601..261463

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020016 ID=TCONS_00020016|Name=TCONS_00020016|organism=Clytia hemisphaerica|type=transcript|length=1863bp|location=Sequence derived from alignment at sc0000345:259601..261463 (Clytia hemisphaerica)
CGCTATGATCTTAGAGgagaaaaagtttcattttacaAAACAGCAAAATT
CAACCATCTATTGAGTCAGTACTTTTCTTTCAATTCAATACAACAAGAAC
CTTTCGTCCCAGTCCCTTTAGTACCCAGACCCTCATCATTCTTATTCGAT
ATGTCTGCACGCCATCTTTTTAATTCCCCTTTCATTAATATAACTGTCAC
CATACCAACCAAATACAATACTGTCATCAAGTACCCTGCAATATCTGACC
TGCCTTTATCAATAATAGCACCACAAATAAAGGTCAGAGTAATAGCATAC
ATGTTTCCAAAAAGAAGTAGGATTCCGGAAGTCAACCCTTCCGAGATGGG
ATACGTAATTTCAGCAGCATGTTCTAGTCCAATTGTCATATACGGGTATG
AGAAAAATCCGAAGATACTGAAACTAACATAGACTAGTATAAAGTTTCCA
CTATAGATCAAAATCAGTGTAAAGGTGAGTAAGGATACACTACAAGCAAT
GAATGTCCCAATTGATACGAGCTTATAGCATCGCGTACGATCTAGCCATA
TTCCGGCTAAGAGAATTCCGATTAATCCTAGAATAACCGATGTGAAACCC
ATTAATCCGATTTCTTGTTCTTTGCCTGGGAAATGGTTCATACACATTTG
GTTCAGAACGGTGTTGTAGGCGCCAAATAAACCAAAATAAATCCCATAAG
CTTGGGCTACTAAGTGAAAATTAACATCCTTGACCAGTAATGCgagtgaa
gttttgaaattcATATGCTGGTTTTCGTCTGCAATCGATTCAATTTGTTT
TCCCTTAGAAATATtcttattctttttcttttgttcaagTTTTCGCTGTT
TATTTTGGATGAGCAGGAGTTGAGACATACTCGGTGGTGATTTAGGAAAA
TCATGAACCAAAATCAGGCAAAGAATGACCATGACTGTACAGAATATAGC
TTGAATTAGAAGTGTTTTTAACATTCCATCTCGAACTTCACCATCATAAT
CTTGAGTGCCTGGAACCATAGTACCACCCATTAAGAATCCAATAGCCACG
CCCATCATGTTCATCAAAACGCCCAAGGCAGAAGCGGTAGCGCGTTCATT
CTCACCAAACCAAGTTGCAGCTAACGAGGGAGgtacaaaaagaataaaac
attGTGCAAGTGCGGCTGAGGCGTTTCCAAGAAAAACGAAGATAAACCCA
TCTCTGTTTGTACCAATCAAACGTAAACAACTTCCTAAACCATTGAGTAC
AGCACCAATCATTATGGTAAACTTGAGTCCCAATCGGTCAAGAGCTAAAG
CAGCTAAGAAAACGAATACATAGAAAAGCATATAGATCATGGATAACCAG
TTAACAGCCAAATAATCGACATTATAATACTCTTTGACCACACTGGTGAT
GGAAGATAAACTGATCCAGATCACTTCATTAGACATGGAAATAAAGGAAA
AGACAGCTAGCACTATCCAACGTCTCTTGTAtaattgaaactcaatggtt
cctTCAGTCTTTGAGACTTCACAAGGAGTAGTTTTGGATTCTTCAGTTTT
GGAAATATCAGGAGTAGCTTTCGGTGAAGTATTTCCACTATCAGAGAGAG
AACTTTTCAACGCTCTCCTTTCATTAATAGTTTCTGGAGATTCTCCAGAT
TCATTCTGTTGCTCATTACAATCCTGAACCTCCATTATATTTGAATGTTC
TGACGTAACAAAATCTGATCAATAAGTCGAAAGTTTTATATCTATATTCC
GGCTATATTCGTAGTACTATTCTTGTATTGTAAGTCCTCTTGTATTTTGT
AAGTACTTCAAAAGCTGACAGTTTGAATGTTTCTCTTTTTGTTGCACTTT
AATGTCCTTGTTC

Coding sequence (CDS) from alignment at sc0000345:259601..261463

>TCONS_00020016 ID=TCONS_00020016|Name=TCONS_00020016|organism=Clytia hemisphaerica|type=CDS|length=1620bp|location=Sequence derived from alignment at sc0000345:259601..261463 (Clytia hemisphaerica)
TCAGTACTTTTCTTTCAATTCAATACAACAAGAACCTTTCGTCCCAGTCC
CTTTAGTACCCAGACCCTCATCATTCTTATTCGATATGTCTGCACGCCAT
CTTTTTAATTCCCCTTTCATTAATATAACTGTCACCATACCAACCAAATA
CAATACTGTCATCAAGTACCCTGCAATATCTGACCTGCCTTTATCAATAA
TAGCACCACAAATAAAGGTCAGAGTAATAGCATACATGTTTCCAAAAAGA
AGTAGGATTCCGGAAGTCAACCCTTCCGAGATGGGATACGTAATTTCAGC
AGCATGTTCTAGTCCAATTGTCATATACGGGTATGAGAAAAATCCGAAGA
TACTGAAACTAACATAGACTAGTATAAAGTTTCCACTATAGATCAAAATC
AGTGTAAAGGTGAGTAAGGATACACTACAAGCAATGAATGTCCCAATTGA
TACGAGCTTATAGCATCGCGTACGATCTAGCCATATTCCGGCTAAGAGAA
TTCCGATTAATCCTAGAATAACCGATGTGAAACCCATTAATCCGATTTCT
TGTTCTTTGCCTGGGAAATGGTTCATACACATTTGGTTCAGAACGGTGTT
GTAGGCGCCAAATAAACCAAAATAAATCCCATAAGCTTGGGCTACTAAGT
GAAAATTAACATCCTTGACCAGTAATGCgagtgaagttttgaaattcATA
TGCTGGTTTTCGTCTGCAATCGATTCAATTTGTTTTCCCTTAGAAATATt
cttattctttttcttttgttcaagTTTTCGCTGTTTATTTTGGATGAGCA
GGAGTTGAGACATACTCGGTGGTGATTTAGGAAAATCATGAACCAAAATC
AGGCAAAGAATGACCATGACTGTACAGAATATAGCTTGAATTAGAAGTGT
TTTTAACATTCCATCTCGAACTTCACCATCATAATCTTGAGTGCCTGGAA
CCATAGTACCACCCATTAAGAATCCAATAGCCACGCCCATCATGTTCATC
AAAACGCCCAAGGCAGAAGCGGTAGCGCGTTCATTCTCACCAAACCAAGT
TGCAGCTAACGAGGGAGgtacaaaaagaataaaacattGTGCAAGTGCGG
CTGAGGCGTTTCCAAGAAAAACGAAGATAAACCCATCTCTGTTTGTACCA
ATCAAACGTAAACAACTTCCTAAACCATTGAGTACAGCACCAATCATTAT
GGTAAACTTGAGTCCCAATCGGTCAAGAGCTAAAGCAGCTAAGAAAACGA
ATACATAGAAAAGCATATAGATCATGGATAACCAGTTAACAGCCAAATAA
TCGACATTATAATACTCTTTGACCACACTGGTGATGGAAGATAAACTGAT
CCAGATCACTTCATTAGACATGGAAATAAAGGAAAAGACAGCTAGCACTA
TCCAACGTCTCTTGTAtaattgaaactcaatggttcctTCAGTCTTTGAG
ACTTCACAAGGAGTAGTTTTGGATTCTTCAGTTTTGGAAATATCAGGAGT
AGCTTTCGGTGAAGTATTTCCACTATCAGAGAGAGAACTTTTCAACGCTC
TCCTTTCATTAATAGTTTCTGGAGATTCTCCAGATTCATTCTGTTGCTCA
TTACAATCCTGAACCTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011248XLOC_011248Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020016-proteinTCONS_00020016-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020016-exon-sc0000345-1491911889:259601..261463TCONS_00020016-exon-sc0000345-1491911889:259601..261463Clytia hemisphaericaexon
TCONS_00020016-exon-sc0000345-1510915933:259601..261463TCONS_00020016-exon-sc0000345-1510915933:259601..261463Clytia hemisphaericaexon
TCONS_00020016-exon-sc0000345-1575043694:259601..261463TCONS_00020016-exon-sc0000345-1575043694:259601..261463Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000345supercontigsc0000345:259601..261463 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0289261	0	0.189731	0.203064	0.389199	0.231833	0.838454	0.281235	1.63409	1.0258	0.4161	0.602768	1.41868	2.45129	1.44429	0.856521	1.96061	1.91684	0.984842	1.0671	1.55048	0.716406	0.143686	0.300184	0.846635	0.642234
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
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BLAST of TCONS_00020016 vs. Swiss-Prot (Human)
Match: FLVC2 (Feline leukemia virus subgroup C receptor-related protein 2 OS=Homo sapiens GN=FLVCR2 PE=1 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 4.678e-67
Identity = 149/446 (33.41%), Postives = 241/446 (54.04%), Query Frame = 2 
Query:  377 QLYKRRWIVLAVFSFISMSNEVIWISLSSITSVVKEYYNVDYLAVNWLSMIYMLFYVFVFLA-ALALDRLGLKFTIMIGAVLNGLGSCLRLIGTNRDGFIFVFLGNASAALAQCFILFVPPSLAATWFGENERATASALGVLMNMMGVAIGFLMGGTMVPGTQDYDGEVRDGMLKTLLIQAIFCTVMVILCLILVHDFPKSPPSMSQLLLIXXXXXXXXXXXXXXXXXXXXXIESIADENQHMNFKTSLALLVKDVNFHLVAQAYGIYFGLFGAYNTVLNQMCMNHFPGKEQEIGLMGFTSVXXXXXXXXXXXXWLDRTRCYKLVSIGTFIACSVSLLTFTLILIYSGNFILVYVSFSIFGFFSYPYMTIGLEHAAEITYPISEGLTSGILLLFGNMYAITLTFICGAIIDKGRSDIAGYLMTVLYLVGMVTVILMKGELKRWRAD 1711
            ++ +RRW V+ VFS  SM N   WI   SI ++   +Y V   A++WLSM YML Y+ + L  A  L++ GL+   + G+ LN LG+ ++L       F    +G    ++AQ FIL +P  +A+ WFG NE +TA ++ V  N +G+AIGFL+   +VP  +D D E+   +     I     T+++IL +I+  + PK PPS +Q L                         S A  +   ++  S+A L K++NF L+   YG+  G F A +T+LN+M + H+PG+E   G +G T VI G++G +++GIWLDR++ YK  ++  +I   V ++ +T  L   G+  +V+++    GFF   Y+ +G E A E+TYP SEG++SG+L +   ++ I  T   G IID   +      + V   +G      +K +L+R +A+
Sbjct:   79 KVSRRRWAVVLVFSCYSMCNSFQWIQYGSINNIFMHFYGVSAFAIDWLSMCYMLTYIPLLLPVAWLLEKFGLRTIALTGSALNCLGAWVKLGSLKPHLFPVTVVGQLICSVAQVFILGMPSRIASVWFGANEVSTACSVAVFGNQLGIAIGFLVPPVLVPNIEDRD-ELAYHISIMFYIIGGVATLLLILVIIVFKEKPKYPPSRAQSL-------------------------SYALTSPDASYLGSIARLFKNLNFVLLVITYGLNAGAFYALSTLLNRMVIWHYPGEEVNAGRIGLTIVIAGMLGAVISGIWLDRSKTYKETTLVVYIMTLVGMVVYTFTLNL-GHLWVVFITAGTMGFFMTGYLPLGFEFAVELTYPESEGISSGLLNISAQVFGIIFTISQGQIIDNYGTKPGNIFLCVFLTLGAALTAFIKADLRRQKAN 497
The following BLAST results are available for this feature:
BLAST of TCONS_00020016 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FLVC24.678e-6733.41Feline leukemia virus subgroup C receptor-related ... [more]
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