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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020038 ID=TCONS_00020038|Name=TCONS_00020038|organism=Clytia hemisphaerica|type=transcript|length=2972bp
AGATAATATTCAACATAAagatattgaataaaaaaacaaatttcataaTA
CACAGCTATGGGGATCTACAACATTGATTATGTCAAGATtcttgttttgg
tgtttttgtttgCCACTTTTTACTGGCTGATGTTACCTGGAAAACCAGTG
GAAAATACATCTTCATCAATTGCTGTCAACACTGAGAGTAGCACCTTAAA
GAAGACAACTAagagtCCTGCTGCAGTTTTGGAGGCACAACTTGCTGAGA
AAGTGGAGGTGATCAAACAAAGACATGCAAAGGTGGTCGAAGAAAAAGAT
GGAATGATCGAAAAACTTCGACAAGATCTTGATAAACAAAATATAATGAT
AACAAATCCAAAGAAAAACTCGAAGCTGAAATCGACAAAATTTCTGCTAA
ATCAGACGAAATTTTGAAATCGAAGAATGAGctgcaaaaagaaaatgaag
aattaaaaacaaaatttgaagagCTCCACAAAGCTGGTGAGAAGGATGAC
TCTAATAAAGTGATCTCTTCCCCTGAGACTGACCACAAAACAGATGTCAA
ACTTGTGCCATTCAAAGGGATGAAGTTGATACACATGGATCTGAAAGGAG
CTCCACCCAAAGTCGAATATTTCTTGGAGGTGATGGAAATAAGCCAAAAG
TTTGGTGCCACTGGTCTTCTCATTGAGTATGAAGACATGTTCCCGTGGTC
TGGTGACCTCAAAATGGTAGCACGAAAGAATGCCTACACCCAAGAACAGT
TAAAGAACATTCTCAACAAAGCCGCTGAACTAAAACTGGAAATTGTTCCT
TTGATTCAGACCTTTGGTCATTTAGAGTTTGTATTAAAACACAAGGAATT
TGCTACTCTTCGTGCTAAGAAAGATGTGACAACCTCCATCTGCCCTTTGA
ATAACCAATCATTGCCTTTGATTAAGAAAATGTTGGATCAAGTGGTAGat
ttccatcaaaatttaaaatggaTTCATCTAGGTGGTGATGAAGTTTGGAA
TGTCAAAAGTTGTGATCGTTGTCATGGCAACTACACGGATGTTGACTTGT
TTCATCGTCACATGATACCCATAATGCAATACGTCAAAAGTAAAAGTGAA
AATCTGAGACCAGTTATTTGGGATGACATGATGCGTAAATGGAATGTTTC
TGATATGAAAGTCATGGCCAAACATGTAGTACCCATGGTTTGGGGATATG
TTTCAGATCTGAGCACCTACCGCAGCTATCCTACTGATATGTGGGAGAAG
TATATGCAAGCCTTCCCTACCATCTTTTTCGCAAGTTCTTTCAAAGGAGC
TTTGAAACCTTGGTCGAATTTCGTTCCAACCCAACAACATTTAGACAACC
ATCTGTCATGGTTGAAGATCTTCAAGAAATATCAAGATAATGGTAAAAAG
GTTGAAGGGGTCGCTCTCACAGGTTGGAGTCGTTTCGATCACTATGGGCC
ATTGTGTGAAACCCTACCAGCGGGGATTCCAACAATGGTTTTATGTCTTT
CGATCCTTGATCATGGAGGTTTTGACAAGGATGTACATGATAAAACATCA
AAACTTCTTGGCTTCCCAAAACCCTTCCAAACCAATGTCAATTATTTCAA
GCTATACAAGCCTGAGAATGCGACATTCAAAGGGCAGCAGTTTTACAATT
TTGTGGGTACTTTTGAGAAGTACAACGGGTGGAAAGAATGGGCGGAAGTG
CGATTAAAAGGGTGGTCGAGACCTTACAACGTCAAAAAAGGACATTTAAG
TTATTTTCAACTAAACGAAACAAGACACGGTTTAGAAAAAAGCTCTAGAG
AACTGATGAAATTACGGGTGAAAGGAAAAGAAGTGCTTTCCAATTTCTTT
GACGATGAAACAGTTACAGAATGGCTTGAGGATAAAATCGATGCCACTGC
CCTAGTAAttgataaagaactaaaacaagTTAAAGAAATGATCAGCAAAC
ATTTTTAGTGAGTTAATTCTTAGTTCTTATTTAGGAAAGGGTgtaaataa
ttaaaatatatatatttttgggaACTTTTTGTAATGACTAGATATTCTCT
AAATCGCCATATCGAAATTTTTAACTCGTCAATATGGTATTAACTTTgaa
attaaccctttaagtgccacggtcatttttttctaagtttttttaaagaa
agtcgctagttcaaactttaaaggcttagttctccggatctagaaggagt
tagaagctcgtttatagtccgTTGGATAATCttgagtctcctctttcttt
taggcgcctTCGACGCCGCTCGATTTAGGAAGGGAggaaaatttttgcat
tttttttactttttagcttaaaatctcgctgaaaagactcacttttgatt
ttttttgcttggtcatgaagcccaatccaatttctaggagttagaccaaa
aataacgatttccaACTCAAACTGGGCTACAGGAGGGCTTTGCCCTCCTT
CATAGctcatgtctgatatatacgacattggcacttaaagggttaagatt
GGTTCAAAAAATTGTACGATgaagtaaatttgaaaaaatcatgaatttga
ATAGGTCACTTAAATGATTATTCGGAACATCAGTCCTAAAGTATAGTGGG
ATTGTTTTTACCCTTTTTAATAAAACTACAACTAAACTACAATAATTAAA
GTCATTCAGTTTTCCCGAGATTTAGTCGTGCAGAACCGATGCAAATAATT
ATAACACACTGATTTTTAAGCACAATTTTGTAATTTCAAGTATCCAGTTT
TCATACagtatatttttatgtttagaTAATCGATAGATATTCTTTGGCAT
ATAATGTATTATTTTACTTAGGCTAGATCAATTCAATTTGTTGTTCAATG
GTCCCGACTGACTCTGATTTTTCcaatgaagaaagaaaaatttaatttaa
tgttGAAAGTTTGACTTTGTCCTCTAAAAGAGATTTGCTTTAGGGTTTAA
TGGTTCTAGGCTCAAATCGcac Run BLAST on NCBI protein sequence of TCONS_00020038-protein >TCONS_00020038-protein ID=TCONS_00020038-protein|Name=TCONS_00020038-protein|organism=Clytia hemisphaerica|type=polypeptide|length=462bp
MKLIHMDLKGAPPKVEYFLEVMEISQKFGATGLLIEYEDMFPWSGDLKMV
ARKNAYTQEQLKNILNKAAELKLEIVPLIQTFGHLEFVLKHKEFATLRAK
KDVTTSICPLNNQSLPLIKKMLDQVVDFHQNLKWIHLGGDEVWNVKSCDR
CHGNYTDVDLFHRHMIPIMQYVKSKSENLRPVIWDDMMRKWNVSDMKVMA
KHVVPMVWGYVSDLSTYRSYPTDMWEKYMQAFPTIFFASSFKGALKPWSN
FVPTQQHLDNHLSWLKIFKKYQDNGKKVEGVALTGWSRFDHYGPLCETLP
AGIPTMVLCLSILDHGGFDKDVHDKTSKLLGFPKPFQTNVNYFKLYKPEN
ATFKGQQFYNFVGTFEKYNGWKEWAEVRLKGWSRPYNVKKGHLSYFQLNE
TRHGLEKSSRELMKLRVKGKEVLSNFFDDETVTEWLEDKIDATALVIDKE
LKQVKEMISKHF Run BLAST on NCBI transcript from alignment at sc0000348:169159..176083+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00020038 ID=TCONS_00020038|Name=TCONS_00020038|organism=Clytia hemisphaerica|type=transcript|length=6925bp|location=Sequence derived from alignment at sc0000348:169159..176083+ (Clytia hemisphaerica)
AGATAATATTCAACATAAagatattgaataaaaaaacaaatttcataaTA
CACAGCTATGGGGATCTACAACATTGATTATGTCAAGATtcttgttttgg
tgtttttgtttgCCACTTTTTACTGGCTGATGTTACCTGGAAAACCAGTG
GAAAATACATCTTCATCAATTGCTGTCAACACTGAGAGTAGCACCTTAAA
GAAGACAACTAaggtttgttttcttttctttcgtcCTATAAATtaaggat
tgaatcataggaatcttttgatttttggtacaaaggtgcaaaatggtagc
ggccaaaatgtgacggagcctgatttttggaaaaacaatttttgggtaaa
tttcaactaaaaaacggccaaaaaaaagggttttttggacttggtgaaaa
attggatcattaattttttcagattttttgcatgaaagtaggtaaaatat
ggcagatttttgtaaaaaaagaatttttcaactcaaaaaacgcatcttta
tctataagaatcactattaaaaaGCATACATCAATNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNaaaaaagaatttttcaactcaaaaa
acgcatctttatctataagaatcactattaaaaagcatacatcaatgatc
ttagccaaattactcaattctttgatgagatggatgtttttttgctcacg
aagtcttgaatatgaaataatatttcaagagcatgaaattttggtttcta
aacaGTTTTTTTATAAGAAACAAACGACTAATTTTAATAGATCGTCACTA
TTTgtgttctgaatgattgtttaacggtcatgctcacgtagatatcaatt
atatatgtgttaaatgcataaccaggtaggtccataaaagtatcacttgt
tatttacatttttatctATTATTATCCCGACCCCTGAAAGAAGTAAGTAC
AAATCAATAACAATCATGTTCCTCAGACTGTGCTCTTGTCCTGACTGTGT
TTCTTgtgtttgtaggggttcgaaataccgttttcccgtcaaaatttttg
ctgaatcccggaatcccgaaaattgaaaaaaataataacaccgtcacacc
tgtttgtacaggttcaaataccggcataatgacaaaaaataaggccaaat
accgtcaccgtctgattttaaaatcctgtaataccgtactaaaaaagggg
cCAATCCCGttacaccgtaaaagtacaaccccccttTCTTTAATTGATTT
GTAGTGGTCCTCTGACCCTTTTATGACTTTGTGGAATATAGAGTATCCAA
TTAAATTCTCCTTTTGAAGAGACTCTAAATTATGTACATacttaattaaa
atatttgtatCTCATTTCTCAGAACCTTCTCTTTTTGACGTACTTTCCTC
ATGATGTCCTGGATACTAggcaagaaaatagagcaaaaAATTTAAGACTT
GCAAGTCTACCCATTCCTAATCGGGCGACGCAGGCAAAACTTACTTATat
aataaaatttcaataagtGTAAAACAGTAAGTAACTTTAAtacatttttc
tgtttttttttttagagtCCTGCTGCAGTTTTGGAGGCACAACTTGCTGA
GAAAGTGGAGGTGATCAAACAAAGACATGCAAAGGTGGTCGAAGAAAAAG
ATGGAATGATCGAAAAACTTCGACAAGATCTTGATAAAGCAAAATATAAT
GATAATAAATCCAAGGAAAAACTCGAAGCTGAAATCGACAAAATTTCTGC
TAAATCAGACGAAATTTTGAAATCGAAGAATGAGCTGCAAAAAGAGAATG
aagaattaaaaacaaaatttgaagagCTCCACAAAGCTGGTGAGAAGGAT
GACTCTAATAAAGTGGTCTCCTCCCCTGAGACTGACCACAAAACAGATGT
CAAACTTGTGCCATTCAAAGGGATGAAGTTGATACACATGGATCTGAAAG
GAGCTCCACCCAAAGTCGAATATTTCTTGGAGGTGATGGAAATAAGCCAA
AAGTTTGGTGCCACTGGTCTTCTCATTGAGTATGAAGACATGTTCCCGTG
GTCTGGTGACCTCAAAATGGTAGCACGAAAGAATGCCTACACCCAAGAAC
AGTTAAAGAACATTCTCAACAAAGCCGCTGAACTAAAACTGGAAATTGTT
CCTTTGATTCAGACCTTTGGTCATTTAGAGTTTGTATTAAAACACAAGGA
ATTTGCTACTCTTCGTGCTAAGAAAGATGTGACAACCTCCATCTGCCCTT
TGAATAACCAATCATTGCCTTTGATTAAGAAAATGTTGGATCAAGTGGTA
GatttccatcaaaatttaaaNGATAAAGCAAAATATAATGATAACAAATC
CAAAGAAAAACTCGAAGCTGAAATCGACAAAATTTCTGCTAAATCAGACG
AAATTTTGAAATCGAAGAATGAGctgcaaaaagaaaatgaagaattaaaa
acaaaatttgaagagCTCCACAAAGCTGGTGAGAAGGATGACTCTAATAA
AGTGATCTCTTCCCCTGAGACTGACCACAAAACAGATGTCAAACTTGTGC
CATTCAAAGGGATGAAGTTGATACACATGGATCTGAAAGGAGCTCCACCC
AAAGTCGAATATTTCTTGGAGGTGATGGAAATAAGCCAAAAGTTTGGTGC
CACTGGTCTTCTCATTGAGTATGAAGACATGTTCCCGTGGTCTGGTGACC
TCAAAATGGTAGCACGAAAGAATGCCTACACCCAAGAACAGTTAAAGAAC
ATTCTCAACAAAGCCGCTGAACTAAAACTGGAAATTGTTCCTTTGATTCA
GACCTTTGGTCATTTAGAGTTTGTATTAAAACACAAGGAATTTGCTACTC
TTCGTGCTAAGAAAGATGTGACAACCTCCATCTGCCCTTTGAATAACCAA
TCATTGCCTTTGATTAAGAAAATGTTGGATCAAGTGGTAGatttccatca
aaatttaaaatggaTTCATCTAGGTGGTGATGAAGTTTGGAATGTCAAAA
GTTGTGATCGTTGTCATGGCAACTACACGGATGTTGACTTGTTTCATCGT
CACATGATACCCATAATGCAATACGTCAAAAGTAAAAGTGAAAATCTGAG
ACCAGTTATTTGGGATGACATGATGCGTAAATGGAATGTTTCTGATATGA
AAGTCATGGCCAAACATGTAGTACCCATGGTTTGGGGATATGTTTCAGAT
CTGAGCACCTACCGCAGCTATCCTACTGATATGTGGGAGAAGTATATGCA
AGCCTTCCCTACCATCTTTTTCGCAAGTTCTTTCAAAGGAGCTTTGAAAC
CTTGGTCGAATTTCGTTCCAACCCAACAACATTTAGACAACCATCTGTCA
TGGTTGAAGATCTTCAAGAAATATCAAGATAATGGTAAAAAGGTTGAAGG
GCTTGCTCTCACAGGTTGGAGTCGTTTTGATCACTATGGGCCATTGTGTG
AAACCCTACCAGCGGGGGTTCCAACAATGGCTTTATGTCTTGCGATCCTT
GATCATGGAGGATTTGACAAGGATGTACATgagaaaacatcaaaacttCT
TGGCTTCCCAAAACCCTTCCAAACCAATGTCAATTATTTCAAGCTATACA
AGCCTGAGAATGCGACATTCAAAGGGCAGCAGTTTTACAATTTTGTGGGT
ACTTTTGAGAAGTACAACGGGTGGAAAGAATGGGCGGAAGTGCGATTAAC
AGGGTGGTCGAGACCTTACAACGTCAAAAAAGGACATTTAAGTTATTTTC
AACTAAACGAAACAAGACACGGTTTAGAAAAAAGCTCTAGAGAACTGATG
AAATTACGGGTGAAAGGAAAAGAAGTGCTTTCCAATTTCTTTGACGATGA
AACAGTTACAGAATGGCTTGAGGATAAAATCGATGCCACTTCCCACGTCA
ttgataaagaactaaaacaagTTAAAGAAATGATCAGCAAACATTTTTAG
TGAGTTAAATTTTAGTTCTTATTTGGGAAAGGCTgtaaataattaaaata
tatatattttttgggaACTTTTTGTAATGACTAGATATTCTCTAAAACGC
CATATCGAAATTTTTAACTCATCAATATGATATTAACTTTGACATtgacc
ctttaagtgccacggtcattttttaaagaaagtcgctagttcaaacttta
aaggcttagttctccggatctagaaggagttagaagctcgtttatagtcc
gTTGGATAATCttgagtctcctctttcttttaggcgcctTTGGCGCCGCT
CGTTTTAGGGAGGGAggaaaatttttgcattttttttactttttagcttt
aaatctcgctgaaaagactcatttttgattttttttgcttggtcatgaag
cccaatccaatttctaggagttagaccaaaaataacgatttccaACTCAA
ACTTGGCTACAGGAGGGCTTTGCCCTCCTTCACAGTCNGATATGTGGGAG
AAGTATATGCAAGCCTTCCCTACCATCTTTTTCGCAAGTTCTTTCAAAGG
AGCTTTGAAACCTTGGTCGAATTTCGTTCCTACCCAACAACATTTAGACA
ACCATCTGTCATGGTTGAAGATCTTCAAGAAATATCAAGATAACGGTAAA
AAGGTTGAAGGGGTCGCTCTCACAGGTTGGAGTCGTTTCGATCACTATGG
GCCATTGTGTGAAACCCTACCAGCGGGGATTCCAACAATGGTTTTATGTC
TTTCGATCCTTGATCATGGAGGTTTTGACAAGGATGTACATGATAAAACA
TCAAAACTTCTTGGCTTCCCAAAACCCTTCCAAACCAATGTCAATTATTT
CAAGCTATACAAGCCTGAGAATGCGACATTCAAAGGGCAGCAGTTTTACA
ATTTTGTGGGTACTTTTGAGAAGTACAACGGGTGGAAAGAATGGGCGGAA
GTGCGATTAAAAGGGTGGTCGAGACCTTACAACGTCAAAAAAGGACATTT
AAGTTATTTTCAACTAAACGAAACAAGACACGGTTTAGAAAAAAGCTCTA
GAGAACTGATGAAATTACGGGTGAAAGGAAAAGAAGTGCTTTCCAATTTC
TTTGACGATGAAACAGTTACAGAATGGCTTGAGGATAAAATCGATGCCAC
TGCCCTAGTAAttgataaagaactaaaacaagTTAAAGAAATGATCAGCA
AACATTTTTAGTGAGTTAATTCTTAGTTCTTATTTAGGAAAGGGTgtaaa
taattaaaatatatatatttttgggaACTTTTTGTAATGACTAGATATTC
TCTAAATCGCCATATCGAAATTTTTAACTCGTCAATATGGTATTAACTTT
gaaattaaccctttaagtgccacggtcatttttttctaagtttttttaaa
gaaagtcgctagttcaaactttaaaggcttagttctccggatctagaagg
agttagaagctcgtttatagtccgTTGGATAATCttgagtctcctctttc
ttttaggcgcctTCGACGCCGCTCGATTTAGGAAGGGAggaaaatttttg
cattttttttactttttagcttaaaatctcgctgaaaagactcacttttg
attttttttgcttggtcatgaagcccaatccaatttctaggagttagacc
aaaaataacgatttccaACTCAAACTGGGCTACAGGAGGGCTTTGCCCTC
CTTCATAGctcatgtctgatatatacgacattggcacttaaagggttaag
attGGTTCAAAAAATTGTACGATgaagtaaatttgaaaaaatcatgaatt
tgaATAGGTCACTTAAATGATTATTCGGAACATCAGTCCTAAAGTATAGT
GGGATTGTTTTTACCCTTTTTAATAAAACTACAACTAAACTACAATAATT
AAAGTCATTCAGTTTTCCCGAGATTTAGTCGTGCAGAACCGATGCAAATA
ATTATAACACACTGATTTTTAAGCACAATTTTGTAATTTCAAGTATCCAG
TTTTCATACagtatatttttatgtttagaTAATCGATAGATATTCTTTGG
CATATAATGTATTATTTTACTTAGGCTAGATCAATTCAATTTGTTGTTCA
ATGGTCCCGACTGACTCTGATTTTTCcaatgaagaaagaaaaatttaatt
taatgttGAAAGTTTGACTTTGTCCTCTAAAAGAGATTTGCTTTAGGGTT
TAATGGTTCTAGGCTCAAATCGcac Coding sequence (CDS) from alignment at sc0000348:169159..176083+ >TCONS_00020038 ID=TCONS_00020038|Name=TCONS_00020038|organism=Clytia hemisphaerica|type=CDS|length=2778bp|location=Sequence derived from alignment at sc0000348:169159..176083+ (Clytia hemisphaerica)
ATGAAGTTGATACACATGGATCTGAAAGGAGCTCCACCCAAAGTCGAATA
TTTCTTGGAGGTGATGGAAATAAGCCAAAAGTTTGGTGCCACTGGTCTTC
TCATTGAGTATGAAGACATGTTCCCGTGGTCTGGTGACCTCAAAATGGTA
GCACGAAAGAATGCCTACACCCAAGAACAGTTAAAGAACATTCTCAACAA
AGCCGCTGAACTAAAACTGGAAATTGTTCCTTTGATTCAGACCTTTGGTC
ATTTAGAGTTTGTATTAAAACACAAGGAATTTGCTACTCTTCGTGCTAAG
AAAGATGTGACAACCTCCATCTGCCCTTTGAATAACCAATCATTGCCTTT
GATTAAGAAAATGTTGGATCAAGTGGTAGatttccatcaaaatttaaaat
ggaTTCATCTAGGTGGTGATGAAGTTTGGAATGTCAAAAGTTGTGATCGT
TGTCATGGCAACTACACGGATGTTGACTTGTTTCATCGTCACATGATACC
CATAATGCAATACGTCAAAAGTAAAAGTGAAAATCTGAGACCAGTTATTT
GGGATGACATGATGCGTAAATGGAATGTTTCTGATATGAAAGTCATGGCC
AAACATGTAGTACCCATGGTTTGGGGATATGTTTCAGATCTGAGCACCTA
CCGCAGCTATCCTACTGATATGTGGGAGAAGTATATGCAAGCCTTCCCTA
CCATCTTTTTCGCAAGTTCTTTCAAAGGAGCTTTGAAACCTTGGTCGAAT
TTCGTTCCAACCCAACAACATTTAGACAACCATCTGTCATGGTTGAAGAT
CTTCAAGAAATATCAAGATAATGGTAAAAAGGTTGAAGGGGTCGCTCTCA
CAGGTTGGAGTCGTTTCGATCACTATGGGCCATTGTGTGAAACCCTACCA
GCGGGGATTCCAACAATGGTTTTATGTCTTTCGATCCTTGATCATGGAGG
TTTTGACAAGGATGTACATGATAAAACATCAAAACTTCTTGGCTTCCCAA
AACCCTTCCAAACCAATGTCAATTATTTCAAGCTATACAAGCCTGAGAAT
GCGACATTCAAAGGGCAGCAGTTTTACAATTTTGTGGGTACTTTTGAGAA
GTACAACGGGTGGAAAGAATGGGCGGAAGTGCGATTAAAAGGGTGGTCGA
GACCTTACAACGTCAAAAAAGGACATTTAAGTTATTTTCAACTAAACGAA
ACAAGACACGGTTTAGAAAAAAGCTCTAGAGAACTGATGAAATTACGGGT
GAAAGGAAAAGAAGTGCTTTCCAATTTCTTTGACGATGAAACAGTTACAG
AATGGCTTGAGGATAAAATCGATGCCACTGCCCTAGTAAttgataaagaa
ctaaaacaagTTAAAGAAATGATCAGCAAACATTTTTAGATGAAGTTGAT
ACACATGGATCTGAAAGGAGCTCCACCCAAAGTCGAATATTTCTTGGAGG
TGATGGAAATAAGCCAAAAGTTTGGTGCCACTGGTCTTCTCATTGAGTAT
GAAGACATGTTCCCGTGGTCTGGTGACCTCAAAATGGTAGCACGAAAGAA
TGCCTACACCCAAGAACAGTTAAAGAACATTCTCAACAAAGCCGCTGAAC
TAAAACTGGAAATTGTTCCTTTGATTCAGACCTTTGGTCATTTAGAGTTT
GTATTAAAACACAAGGAATTTGCTACTCTTCGTGCTAAGAAAGATGTGAC
AACCTCCATCTGCCCTTTGAATAACCAATCATTGCCTTTGATTAAGAAAA
TGTTGGATCAAGTGGTAGatttccatcaaaatttaaaatggaTTCATCTA
GGTGGTGATGAAGTTTGGAATGTCAAAAGTTGTGATCGTTGTCATGGCAA
CTACACGGATGTTGACTTGTTTCATCGTCACATGATACCCATAATGCAAT
ACGTCAAAAGTAAAAGTGAAAATCTGAGACCAGTTATTTGGGATGACATG
ATGCGTAAATGGAATGTTTCTGATATGAAAGTCATGGCCAAACATGTAGT
ACCCATGGTTTGGGGATATGTTTCAGATCTGAGCACCTACCGCAGCTATC
CTACTGATATGTGGGAGAAGTATATGCAAGCCTTCCCTACCATCTTTTTC
GCAAGTTCTTTCAAAGGAGCTTTGAAACCTTGGTCGAATTTCGTTCCAAC
CCAACAACATTTAGACAACCATCTGTCATGGTTGAAGATCTTCAAGAAAT
ATCAAGATAATGGTAAAAAGGTTGAAGGGGTCGCTCTCACAGGTTGGAGT
CGTTTCGATCACTATGGGCCATTGTGTGAAACCCTACCAGCGGGGATTCC
AACAATGGTTTTATGTCTTTCGATCCTTGATCATGGAGGTTTTGACAAGG
ATGTACATGATAAAACATCAAAACTTCTTGGCTTCCCAAAACCCTTCCAA
ACCAATGTCAATTATTTCAAGCTATACAAGCCTGAGAATGCGACATTCAA
AGGGCAGCAGTTTTACAATTTTGTGGGTACTTTTGAGAAGTACAACGGGT
GGAAAGAATGGGCGGAAGTGCGATTAAAAGGGTGGTCGAGACCTTACAAC
GTCAAAAAAGGACATTTAAGTTATTTTCAACTAAACGAAACAAGACACGG
TTTAGAAAAAAGCTCTAGAGAACTGATGAAATTACGGGTGAAAGGAAAAG
AAGTGCTTTCCAATTTCTTTGACGATGAAACAGTTACAGAATGGCTTGAG
GATAAAATCGATGCCACTGCCCTAGTAAttgataaagaactaaaacaagT
TAAAGAAATGATCAGCAAACATTTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00020038-exon-sc0000348-1491911889:169159..169371 | TCONS_00020038-exon-sc0000348-1491911889:169159..169371 | Clytia hemisphaerica | exon |
| TCONS_00020038-exon-sc0000348-1510915933:169159..169371 | TCONS_00020038-exon-sc0000348-1510915933:169159..169371 | Clytia hemisphaerica | exon |
| TCONS_00020038-exon-sc0000348-1575043694:169159..169371 | TCONS_00020038-exon-sc0000348-1575043694:169159..169371 | Clytia hemisphaerica | exon |
| TCONS_00020038-exon-sc0000348-1491911889:171474..171596 | TCONS_00020038-exon-sc0000348-1491911889:171474..171596 | Clytia hemisphaerica | exon |
| TCONS_00020038-exon-sc0000348-1510915933:171474..171596 | TCONS_00020038-exon-sc0000348-1510915933:171474..171596 | Clytia hemisphaerica | exon |
| TCONS_00020038-exon-sc0000348-1575043694:171474..171596 | TCONS_00020038-exon-sc0000348-1575043694:171474..171596 | Clytia hemisphaerica | exon |
| TCONS_00020038-exon-sc0000348-1491911889:172237..173300 | TCONS_00020038-exon-sc0000348-1491911889:172237..173300 | Clytia hemisphaerica | exon |
| TCONS_00020038-exon-sc0000348-1510915933:172237..173300 | TCONS_00020038-exon-sc0000348-1510915933:172237..173300 | Clytia hemisphaerica | exon |
| TCONS_00020038-exon-sc0000348-1575043694:172237..173300 | TCONS_00020038-exon-sc0000348-1575043694:172237..173300 | Clytia hemisphaerica | exon |
| TCONS_00020038-exon-sc0000348-1491911889:174512..176083 | TCONS_00020038-exon-sc0000348-1491911889:174512..176083 | Clytia hemisphaerica | exon |
| TCONS_00020038-exon-sc0000348-1510915933:174512..176083 | TCONS_00020038-exon-sc0000348-1510915933:174512..176083 | Clytia hemisphaerica | exon |
| TCONS_00020038-exon-sc0000348-1575043694:174512..176083 | TCONS_00020038-exon-sc0000348-1575043694:174512..176083 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000348 | supercontig | sc0000348:169159..176083 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015883 | Glyco_hydro_20_cat |
| IPR017853 | Glycoside_hydrolase_SF |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0005975 |
carbohydrate metabolic process |
| molecular_function |
GO:0004553 |
hydrolase activity, hydrolyzing O-glycosyl compounds |
Blast
BLAST of TCONS_00020038 vs. Swiss-Prot (Human)
Match: HEXDC (Hexosaminidase D OS=Homo sapiens GN=HEXDC PE=2 SV=3) HSP 1 Score: 272.707 bits (696), Expect = 1.582e-80 Identity = 156/474 (32.91%), Postives = 249/474 (52.53%), Query Frame = 3
Query: 558 PFKGMKLIHMDLKGAPPKVEYFLEVMEISQKFGATGLLIEYEDMFPWSGDLKMVARKNAYTQEQLKNILNKAAELKLEIVPLIQTFGHLEFVLKHKEFATLRAKKDVTTSICPLNNQSLPLIKKMLDQVVDFHQNLKWIHLGGDEVWNVKSCDRCH------GNYTDVDLFHRHMIPIMQYVKSKSENLRPVIWDDMMRKWNVSDMKV--MAKHVVPMVWGYVSDLSTYRSYPTDMWEKYMQ-AFPTIFFASSFKGALKPWSNFVPTQQHLDNHLSWLKIFKKYQDNGKKVEGVALTGWSRFDHYGPLCETLPAGIPTMVLCLSILDHGGFDKDVHDKTSKLLGFPKPFQTNVNYFKLYKPENATFKGQQFYNFVGTFEKYNGWKEWAEVR----LKGWSRPYNVKKGHLSYFQLNETRHGLEKSSRELMKLRVKGKEVLSNFFDDETVTEWLEDKIDATALVIDKELKQVKEM 1940
PF+ M+L+H+DLKGAPPKV Y E+ + + GA GLLIEYEDMFP+ G L+++ K AY+ ++K IL+ A +LE++PL+QTFGH+EFVLKH FA LR ++ P +SL L+ M+DQV++ H + +H+G DEV+ + + N T L HM + VK++ ++ P++WDDM+R + + + V P++W Y +DL + + +KY + FP ++ AS+FKGA P P + HL NH+ WL++ + ++G+ LTGW R+DHY LCE LPAG+P++ CL +L GGFD+DV K LLG +++ + +F G V + A + + GW PY+ ++ + + + + L + + L F + V EWLE+ + + + L+ + E+
Sbjct: 6 PFQ-MRLVHLDLKGAPPKVSYLSEIFPLFRALGANGLLIEYEDMFPYEGPLRLLRAKYAYSPSEIKEILHLAGLNELEVIPLVQTFGHMEFVLKHTAFAHLREVGSFPCTLNPHEAESLALVGAMIDQVLELHPGAQRLHIGCDEVYYLGEGEASRRWLQQEQNSTG-KLCLSHMRAVASGVKARRPSVTPLVWDDMLRDLPEDQLAASGVPQLVEPVLWDYTADLDVHGK--VLLMQKYRRCGFPQLWAASAFKGATGPSQAVPPVEHHLRNHVQWLQVAGSGPTD--SLQGIILTGWQRYDHYSVLCELLPAGVPSLAACLQLLLRGGFDEDVKAKVENLLGI-----SSLEKTDPVREGAGSFPGSNILALVTQVSLHLRSSVDALLEGNRYVTGWFSPYHRQRKLIHPVMVQHIQPAALSLLAQWSTLVQELEAALQLAFYPDAVEEWLEENVHPSLQRLQALLQDLSEV 468
The following BLAST results are available for this feature:
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