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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020075 ID=TCONS_00020075|Name=TCONS_00020075|organism=Clytia hemisphaerica|type=transcript|length=2186bpRun BLAST on NCBI protein sequence of TCONS_00020075-protein >TCONS_00020075-protein ID=TCONS_00020075-protein|Name=TCONS_00020075-protein|organism=Clytia hemisphaerica|type=polypeptide|length=458bp MRKAAWSLVSYHQRSFQICSSLQSQVVQQDIAIEKSEHGPEGTYKSLLENRun BLAST on NCBI transcript from alignment at sc0000348:279435..287238- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020075 ID=TCONS_00020075|Name=TCONS_00020075|organism=Clytia hemisphaerica|type=transcript|length=7804bp|location=Sequence derived from alignment at sc0000348:279435..287238- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000348:279435..287238- >TCONS_00020075 ID=TCONS_00020075|Name=TCONS_00020075|organism=Clytia hemisphaerica|type=CDS|length=15147bp|location=Sequence derived from alignment at sc0000348:279435..287238- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020075 vs. Swiss-Prot (Human)
Match: AFG1L (AFG1-like ATPase OS=Homo sapiens GN=AFG1L PE=1 SV=2) HSP 1 Score: 418.698 bits (1075), Expect = 6.441e-138 Identity = 212/411 (51.58%), Postives = 283/411 (68.86%), Query Frame = 3
Query: 195 HGPEGTYKSLLENGLLKVDEEQQRVVYRLQKLYQDVRTYNKTSASNLFGKLFSFSSQSSNAPRGVYLYGSVGCGKTMLMDMLYKNVDIRPKKRVHFNQFMIDVHKRIHQFKLDAPPVDHRSRTSKPLDPIPPIAKDISDETWFLCFDEFQVTDVADAMILKRLFTCLFENGVIVIATSNRHPQDLYKNGLQRGNFLPFIPILERYCEIVPL-SGVDYRRLEFSDISKTYFNSQDASTKDKLEDVFKLLCENEKQDVKPKTVEVYGRNNVFQRACGKVAFTNFDELCRKALGAADYIAFAKTFDTIILTDVPVMSPRRKVELRRFITLIDNFYDNKVRLILSAAQPLDNLFITNETMNDYDAEAKRMLMDDLGLIGTQDEDHNISLFTAEEEIFAIERTVSRLTEMQSEQYW 1424
HGP Y L++ LK DE Q+RV+ LQKL++D++ YN A LF KLFS S PRG+Y+YG VG GKTM+MDM Y V+++ KKRVHF+ FM+DVHKRIH+ K + P +K DPI PIA++IS+E LCFDEFQVTD+ADAMILK+LF LF+NGV+V+ATSNR P+DLYKNGLQR NF+PFI +L+ YC V L SG+DYR+ E K Y+ + +A + ++ +F L + + +P+ ++V GR +ACG VA F+ELC + LGA+DY+ +K FDTI L ++P + + + RRFITLIDNFYD KVR+I SA+ P+ +LF+ +D + E R+LMDDLGL +QD +S+FT EEEIFA +RT+SRLTEMQ+EQYW
Sbjct: 73 HGPLDHYDFLIKAHELKDDEHQRRVIQCLQKLHEDLKGYN-IEAEGLFSKLFS----RSKPPRGLYVYGDVGTGKTMVMDMFYAYVEMKRKKRVHFHGFMLDVHKRIHRLK-QSLPKRKPGFMAKSYDPIAPIAEEISEEACLLCFDEFQVTDIADAMILKQLFENLFKNGVVVVATSNRPPEDLYKNGLQRANFVPFIAVLKEYCNTVQLDSGIDYRKRELPAAGKLYYLTSEADVEAVMDKLFDELAQKQNDLTRPRILKVQGRELRLNKACGTVADCTFEELCERPLGASDYLELSKNFDTIFLRNIPQFTLANRTQGRRFITLIDNFYDLKVRIICSASTPISSLFLHQH--HDSELEQSRILMDDLGL--SQDSAEGLSMFTGEEEIFAFQRTISRLTEMQTEQYW 473 The following BLAST results are available for this feature:
BLAST of TCONS_00020075 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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