TCONS_00020130 (transcript) - C. hemisphaerica

Overview
NameTCONS_00020130
Unique NameTCONS_00020130
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1629

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00020130 ID=TCONS_00020130|Name=TCONS_00020130|organism=Clytia hemisphaerica|type=transcript|length=1629bp
GGAAATTCTTTTACTTGATTGGTCAAGTAGGCGATTTATTACGTCATACA
ACAATAGTAATAAAAACTCgtgattttaaaagatttcattCTACAAAAAC
TTTCGAGGAAAGAGAAGCCAgtgaattttaaagaaaaatatactAGCTGG
AAAGCAAACATAAATctttaaacaaaaagattttattttcttgCTCAGTC
TGTTCAAACGTTAAATTATTATAAACATGGCTATCGTAACGTCTTGCACT
AAAGGTTTATTCCTTATcttcaactttgttttttggttaACTGGTCTTGG
TTTATTAGTCCTTGGTATCTTGTCTAAATATGCGTTCAGCTACATGCTCA
AGTTGTCATCTGACATCAACTATAATTTGGCTCCTTACATCATGATTGGA
TGTGGTGTGTTCATTGTGTTAGTGGGCTTCATCGGCTGTTGGGCTGCTGT
TAAAGAACATGGTTGGGCCCTCAAATTGtaTATGTTTGTGCTGGTCATCT
TGGTAGTAGTCGAAATTGCAGGTGGAATCACTGGATATGTCATGAGAAAT
AAGCTGTCTAATGGATTGAAGTCTGGTTTGGATAATGCTGTCAAGAATTA
TTATCAAGACGAAGATTTAAAGGAAGCAATGGACAAAGTTCAAGGATCTG
TCATCAAGTGCTGCGGTGAAAACGGATACAAAGATTACGTCACAGCGAGC
GGTAACGCCACTGTTGGAAATGCCACCGTTGGAAATGCCACCACTGTCAC
TCACTACAAAGTTCCAAAATCATGTTGTAAAGATGGGGTTACTGATGGAT
GCAAGTATGATCAAGTGATTACTGATACTACAACTGATACTGGATTTTAT
ACTGATGGATGTTACAGCGAGCTCTTAACAAAGACCAAGAAGAACTTTTT
GATCGTCGGTGGATGCGCCCTTGGTATTGCTGTTTTCCAAATTCTTGGTA
TCTTATGCGCATGGGCATTGACAAGACAATTCAATAGCGATAGCTACCAA
CAAATGTAGATTCTGAAATCTCATAGCTGCAAAGGAAACTCATAGGGCTC
ATAGAGATGGTGTGTTTGTTGTTGACGAATTTTATGTGGATACTAAATGG
TTGCTATTCtatatttttaacatttggGAATTATCAGTTttgttcaaaaa
aataatatctttgCGAATATGTACAACAAGAGTTTTGAGGATAACTCCTA
CCCACTTATAGCTTTATATAAACCTTATAAAAAGGTAGTTtttcaatccc
ggccaagcggtaatggtagcactactcaatagcggtgttaTGCATCTACT
TTTTCCTCGGACACTTGTGATGCCGCTTACGTTTCATGTTAGGCAAAGAT
TTGATACTGcttggcttctttgcgggtacaaCTCCGATCAACGTGTTCTT
AACTCTCAGACTCAGTCGTAGGAAATCTTATCAGATTATTCgcataaatt
ttaattttttgcctTTNTTCTTAACTCTCAGACTCAGTCGTAGGAAATCT
TATCAGATTATTCgcatgaattttaattttttgcctttttttttacttgt
caGATATTTTGTTAGGGGATAGTTATacttatgttttgatttaaagaaaa
ttaatttataTGATTCATTATCATGCGAT
Run BLAST on NCBI

protein sequence of TCONS_00020130-protein

>TCONS_00020130-protein ID=TCONS_00020130-protein|Name=TCONS_00020130-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MAIVTSCTKGLFLIFNFVFWLTGLGLLVLGILSKYAFSYMLKLSSDINYN
LAPYIMIGCGVFIVLVGFIGCWAAVKEHGWALKLYMFVLVILVVVEIAGG
ITGYVMRNKLSNGLKSGLDNAVKNYYQDEDLKEAMDKVQGSVIKCCGENG
YKDYVTASGNATVGNATVGNATTVTHYKVPKSCCKDGVTDGCKYDQVITD
TTTDTGFYTDGCYSELLTKTKKNFLIVGGCALGIAVFQILGILCAWALTR
QFNSDSYQQM
Run BLAST on NCBI

transcript from alignment at sc0000349:28793..37653-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00020130 ID=TCONS_00020130|Name=TCONS_00020130|organism=Clytia hemisphaerica|type=transcript|length=8861bp|location=Sequence derived from alignment at sc0000349:28793..37653- (Clytia hemisphaerica)
GGAAATTCTTTTACTTGATTGGTCAAGTAGGCGATTTATTACGTCATACA
ACAATAGTAATAAAAACTCGTGATTTTAAAAGATTTCATTCTACAAAAAC
TTTCGAGGAAAGAGAAGCCAGTGAATTTTAAAGAAAAATATACTAGCTGG
AAAGCAAACATAAATCTTTAAACAAAAAGATTTTATTTTCTTGCTCAGTC
TGTTCAAACGTTAAATTATTATAAACATGGCTATCGTAACGTCTTGCACT
AAAGGTTTATTCCTTATCTTCAACTTTGTTTTTTGGGTAAGATTCATTTT
TATATTCATTCGCCTATTTTTGAGTGATCTTTTGAGCCTGATGCTATATG
TCCCATATTAATTAGGATAGGTATTTTGTGAAACAAAAAAATGGTCTAAC
TATTAGGTAGTGAGCCATTAGCCTGTTAGCATCAAATTCTATCAAATAGA
ATTGGACAATAGGGACATGCCACTGCACTGGATGGAGTTTGCTGACACGC
CCAACACCGGACGCAAAATGAGAAAAACCAGACAGGTTCTTGAATCAATC
CGGTGCATCCGGTGGTGCGCAATAAAACACTAAAGAATTCCTATTTCTAT
TTCTGCAATCCAAAGCTCCTGAAAGAAGATAGTTGGACAGAAATTCTTTG
AACTTCTTCACATATATGTGCATAAATTCATTATGGAATTACTTTCGCAA
ATATTTACCTCCAACAACTGCTCTAACTTGGGAGTACCGTAAGTTGGTCT
AATCCCTCGTCTAATTTCGACACCCTTCTTTAGAGACAGGAATAAATATG
AAAGCTTGAATCACTGATTGAAAAAGGATTATTCCTCTCTGACCACTAAG
CAAAGAAAAACATTTTTAACCTTTCTATCAATTTCAGGTGATAAAAAGGG
TGTTGGAATCAGAGAAGGGATGTCGACATTAGGCCAAGTTACGGTATATA
TCTGACAAAACATGGGATGGCAATTCGGCCACCATTTCACCGAACCTCCA
AAGTCATTTGATTTGAGTTTATGAATGGCGTATTAAAAAATACACAATTT
CTCTTTCGCACCGAGTAGCCTTTTAAATCGAAATATGAAAAAAATCTGTA
GTGGAACGCAAAACGATGGAGTGTTTGACGTCACTTGCGCAGCAAGTTAC
ACTCTTTATTTGTTAATCCCATATCGGGCGATGGGCAGTTAGGTGGCGGG
CGTTCTCTAATTATCTAAATCGGCATCCGGTCATTTTGAATGAAAACCAA
CATGACAGAAAGTATAAGTTATCAAAACAAATTTGTTGTCAATGAGACTT
AAAAGAAAGTGAAAATACAGGCCAGATATCAACCAGTCCCATGTTTCGAC
CAATCGTCCCAAGTTAGAGCAGTTGGCAGTAATAAAGATTGTTATAAAAA
TTTAAAAGGTTAAGCCTTTACAAATATTTATCGGCAATCCAAAAAATATC
TGCAGTCTGATTGGTTGAAAAGAGTACAATATATCTTGTATTTTACATGT
AAAGATATAAATTGACGAAAAGATGGTGTTACATTGTAGCAATAGAGATA
ATCTAACATCACTCTGCTACAAAAGTGCCCTGTGCTTTTTTCCAACACAA
AAAAAAAAGTGCATTTTTTGTGTCACCGATAAACAACTTATCAGACATTT
TCTCGTATAATATGGCAATATTTCACCCGTCCCAGATTTTTTCCGTATAT
TGTATGCAAAAATCTAGAAACTCTGTGGTCTATTGAATAAATAATTACAA
TGCTAATTTATCCGATTTGTACTAGCCAGTCAGGACTTCCTTTCACTTTT
TTGCACATAGGTGCCCGACGGTCTCTAGCTATATATTTTGGTTTTGATTT
CAAGCAAAAGTCTTCACAACATGATGTAGGGCAATGGGATGATTGTTGAT
AAATATAAAAATTAAATTAAAAGAAAATCCCGATCATTGTATTCAGCACT
AAAAAAAACCCTTTTCAATGTTGAGTTTATTCTACCTTAGATCATAATTG
TTACCTTTCTAGATTTATTAGCGTTAAAATACAGTAAATTTTCATGAAAA
ATATTTTGTGATGGCCGTACACCCAATCACATCTATGGTTATTTTCTATC
TAAAATAAATAATATCAAAAGACTAAGGAAGCCCTGACTGGTTACTGGCT
GAGGTCTTGAGATGAAGCGAGGCTAAACATTATTCTGTCAATAACAAACT
ACATTAAAATTGTAACTGCCTTAGTTTGAATTGATGTGTGACATAATTAA
GTCTCCTGTGAGTTGATAAATTTGAAAAAAATTGTTGGAAGGGTAATTTT
TAAAAAGTTTTAATAGTCTAATCAAGAATTTTGTTGTTGCTGAGTTCTCT
TTAATAAGATTAATATTGGCTTTAGTTTGACAAAGATGTTTTATTTTCAG
GTATTATAGACAATTCCACTATATGGCTGTATGTAGCAATAAAAGGGAAA
ACAGCACCGTTTTGATGTTTTCAATTTTTGAAGTTGATATTAGATAGCTA
GAATATTTTTGAACAACCAATGAAATTTTGATATGTGTAAAATCATTGGT
TTTCAAAGCACAAAAAAAAGAGTTTCGATTCATCATTTAATAATCACTTC
TCTCTCAGTTGGAACAAAATAGAAACCCATCTAATAAAGGAATATATATA
AAAGGAACTTGTTACAATACAGATTTTTTATTAAAAAATTAGAAAGGAAG
AAAAGAGATACCTTGGGATATTAATTTATGATGGCTTGATAGGATGTTTA
ATCTGTTTTCTCTCCTCCTTTAATCATTTTTCTCAAAAGTTTTCTCAATA
TTAGAGAATTGTTTTGAATATTATTTTGAAGGATGCTCACAAAAGAAAAT
CTAAACAGCATGAATAGTCCCTTTTGTATATACCCTTTATCTGAACTAAC
TTCTTCCCTTTTAGATTTTAGTTATAATGCAAAAATAGGAATTTCTCTTA
TGCATTGATTATGGTCCTTTCAGAACTAATTTGTTTGTTATGATAAAATT
CAATGATAACCTTTTGCTATGTCTGATTGAGACTCTGACATTATCATTTT
AAAAGAATGCAAACCTTATTATGGGAAATAAGGAAATGAAAATCTCATTA
TGAGAAACTTTTCTCTCAAAGTTTACTACTAATGACGTATTAAAAAATGA
AGAATTTTGGTAAACCAATATTTATAAAATGGCTTTTGAAAACTAATATT
ATTCGATCTATTTAGCACATAAAATAAAGCCAAATTAAAGGAAATCCTAA
AATGAAATGATATTGACTAAGCTACAGCATTGATGAATATTGATTTTCCT
GTCATTTCCAAGTACGCACCAGAACTTTAATCTTGTGATGTCCTCAAATG
CATTAATAAGCAATGTAATAATGTGATTGAATTTCAAATCCAAGAAAAAA
TACTTAAAGCCTTTCTCATTCTTACTTTTCATCACCTTTTTTCGACATTT
TATTTTCAGTTAACTGGTCTTGGTTTATTAGTCCTTGGTATCTTGTCTAA
ATATGCGTTCAGCTACATGCTCAAGTTGTCATCTGACATCAACTATAATT
TGGCTCCTTACATCATGATTGGATGTGGTGTGTTCATTGTGTTAGTGGGC
TTCATCGGCTGTTGGGCTGCTGTTAAAGAACATGGTTGGGCCCTCAAATT
GGTAAGAGAAATCATTATTTGACAAAGCACAAGGCAAAATTCTAAGCATT
TCACCCACTGGCTGTTTTTTGAGACCCCCCCATGATACATGGAAAGAAAT
GCTACAAGTTTTCTGGCTTATAACGGCCACAGTGTTTGGAATTTTCACTG
AGTTTCAAAGGATGATAATTTTTTGCTTTTCTTTTTATAGTATATGTTTG
TGCTGGTCATCTTGGTAGTAGTCGAAATTGCAGGTGGAATCACTGGATAT
GTCATGAGAAATAAGGTATTGTATAAAGTATTGTAATGTTTGGAGGCTTA
ATTCTTATACTTTAATGGGATAAACTTTCGCGGGGATTAAATTTCGCAGA
TTTCGCGGGTTTGGGTGTCCCAATGGAAATTTACAAGGGCCTCACCCGCG
AAACATTTCTAAACAAAACTCAAAATATGTCAAACAAATACTATTTGAAT
GTTTACTGGCATCGAAGAAGCGCTAATAATGTGTATTTCAACAACCAAAA
TGCATGATTTGACAGTAAAAGTCTCAAAATGATAAAAATATTGCCACCCA
ATAGTGCCACCCGCGAAATTAGGACCGCGCGAAATTTTTGAATTTCGCGG
ATAGGCCCAACCGCGAAATTTAATCCCCGCGAAAGTTTATCCCATTAAAG
TAGTAAATAGGGGAATTGTCTCAATTTAGAAGTTGAACTTTTTAAAGACT
ATCTATTTATGACCTTGCCAAAAAAACGAACTATAACAGAGCCTTTAATA
TTATTGCTTCACATAATTTCAGAAATATATTGTTTTGAATTGATTATGTT
ATAACACATCATGTTCTTTAATTCGGAAAGGGGTCTTGTTATATTGATTG
TATCGCTTTACCTCTTATGTAATTGTTTGTAAGAGGCCCTTGATGAGATG
AGTGGATTTTAGCTGCAGAAAAATAGACTGGCAGAATATCAACCTTTGAA
CTTGATTACACGTTGCCCTAGTTTGGATCCTTTTGACCTCAGTGTTTATT
TAAAACAGTGTTATTTATTACTGAAGGGCCTTTTTTAAACAAGCCTTGAC
AACCAAGTTATTGGCTTATTTGTTTGCCTTTCTTTTGACAATTTGGTGTT
TAGGTGTTTTAATAACCATATTTTAAAAGCAAATAGACATAAGATATAAT
AAATTACTGAGTAACACGATTCATGGCTCAGTGTATACAATCGATTATTG
TGCTTATAAAAAAGATAATAGACATAAGAATTAATTGAAAGCTGAGTATG
CAAACAGATAAAATCACAAATATAAAGCAACAAAGTTAATGATTACTTTG
ACATTAATCCATTTTAATGCCCTTCCGCCTAATCATTCTTATTCGTCATG
CCCTACCATCATAACACACGTATTCGGCATAAAAAAATACGAAATGCGGT
CAAGCCTCTAATTTTAGGTCACCATGAAGAATTTTACAAAATGTGCGTTT
GGGAAAACTTGGGAACTAAAATGCCTCATTTTCCCGAATAAAAGCGGTCA
GTTTTCAATTGTTTGTATAAAAATGATCTCGATAACCATAATTTACGTAA
CAACGTGTTGATTGCGACGACTCACTTTTTTCGAGGGTTTGCAACGATCA
GTTGCCCAAAAAGAGATTTTTAAGTATTGATAGTTTTTTTTTCGAATTCT
AGCATTTTTTATTTAATATCTTATAGCTGTCTAATGGATTGAAGTCTGGT
TTGGATAATGCTGTCAAGAATTATTATCAAGACGAAGATTTAAAGGTACA
GTCCTTTTCATGTAAAAACAGCAGAAAGATTTCTCTTCGCTTGTTGTCTT
GCTAGAATTTTCCCTTAACCTTAAAAACTTAAAGAAAACTTTGGGGCAGA
TTGGAGTATTCAAAAACGGTCGGATTTGGCTGAAATTTGGCACACTTTTT
CTTTGAGCTAATATCTGGGGTGTTTTTCATTTTTCAAACATTTTGATTTT
TTGGGCCCAGAGACGAGTTTTTTAGCCAAAACGAGGCTTAAACTTTGAGG
CAGCCTGGAGACTTCAAAAATGGTCGGATTTGGCTTGGGTGAATATCTGG
AGGTAGTTTTTTCACTTTTCGAAAATATTTGTTTGGGGCCTTGGTACTGA
TCTTCTGGTTTGCTTTGCTACAATCAGGCTACTGAAGTTGAGCCCAGTGC
GTTGCGCACGTTCGTCGGTTATAGTTACAGCTAACAATACACTTTGTGCT
CAAGCTGACCTTGCTTTAGTCAAGGAACTTCAGTTCTTTTTCCACAGTCC
TTATTACTAAGCCGAACTTTAAAGACCTATTTTTGCTATAACAAACAGGA
AGCAATGGACAAAGTTCAAGGATCTGTCATCAAGTGCTGCGGTGAAAACG
GATACAAAGATTACGTCACAGCGAGCGGTAACGCCACTGTTGGAAATGCC
ACCGTTGGAAATGCCACCACTGTCACTCACTACAAAGTTCCAAAATCATG
TTGTAAAGATGGGGTTACTGATGGATGCAAGTATGATCAAGTGATTACTG
ATACTACAACTGATACTGGATTTTATACTGATGTACGTGGACTCTTGTTT
CTTGATTATTTACCCTTTGATCTCTTTTTTTATTCTTGCGTTGATTTTTT
AAATACACTAAAATGGGAGTGTTATATGATGATTGATCTACTATGTTTTT
AACTTCTGAACTTCAACTTCAGCAGTCTAAAATCTTTGCAAATTCTAACG
TGCTTTAAAACGGAAAATAACACGGATTTAAGTCACCAAAAAAAGAGAGA
GAAAGAGGCCAAGTAGCGTAAAAAATATAACATGATGATAGTTTATGTCT
TGTAAATGGGCCTTGGTATTAGTGTCTACTTTTACTCAATATTGGCTTCT
TTTATGTAAATTACAGAAAAAACAAAAAAACAATGTTATAATATAATTTG
AAGCCATTTTTTAAAAGTTCAAATTTTAAAAAGAATAAAGTGAAATATTT
TGAGCAATGGGTTTTTAAAGTTTTTTCAAGGGACCTGTGTATCTGTAGTA
AAGCAGGGTTTATTTTATACTATACCTGACCCCTAACATTTTTACTTGTT
TTACATAGGGATGTTACAGCGAGCTCTTAACAAAGACCAAGAAGAACTTT
TTGATCGTCGGTGGATGCGCCCTTGGTATTGCTGTTTTCCAAGTAAGCGA
AATTCATATCTCTGAACACACTTGTCACGGATATTTTCAAGAGGCTCCCA
GTCACCTTTCAAATCACGCAATCGAATCACACAAAAAGAATTTCCAAATC
ACCTTATCACGAGTTAAATTTCCTTTCTATCACGATCACGTTGATCACCT
TCGTTCCTCCGTTCACGCAATCGCACACTTTAAAATCTAAATCACGAAAT
TACCAAAGCCGCTGGGGGGGCTCTTTCAAAAATCTAGACCGACCAAAATA
CCTAATGCAGTAAATATGAGTTTGAATCTAATGCCTGTATTCATATCAAT
CAGATTGGGTCTGAGTAGGCTAGGGTGAAATTACGTCGATATCTACGCAC
CTGTGAACGTATCTACGCCGCAATGACTTCAGATATTTGACGTGTCTTGG
CCCTCTGATAATCAAACCCAGGTTTTTTGACGCTTTAGGGTTCTGTGGTG
GGTGTATTTACGAATATGAATTTGTTCTAAAAAAAATGTATTCCCTTTAG
GAGGGCTTTACCTCTTGAGCTTCCGATGAGATTTATCATTTTCAAATCTA
AAGAACTGAAAACGACTTTAGTTGAGAGTGGAGAGTGAAAAACTGCTGCC
TCTCCATACTTGCAGCCTCTTTCTAGCCTCGTGAAAATTAAAAGTTGAGC
AGGAAATAGTCTAGCAAGCTAGACGACTAATTCAGACATGAAATAAAGAA
AAAAGTAATGGGGGAATAAATTTTAGTCTATACTTTAGTTTATACAAACT
AAATTCCGTAACAATAATCGTATTATCATATAATGCCTATACTACTGTAT
TACACGCATTATAAATGATTCCAGTCTATACAGGAAACGGAAATATTTAC
GATCTGATGTATCGCTGCTAGGAAACAGTTTGTCTTAACTAAAGCGATAT
CATTCTCTATGGAAAAATGGAAAAAATCGCATTGCCTGAAATGAAAATCA
AGTTTTTTAAAGTGTCTCTTCGACACTTTAAAAACATAAGGCATCTTTCC
CAAAAGTGTTTTCATATTTTTTATGATTTTCTTCCTCCTTTAGATTCTTG
GTATCTTATGCGCATGGGCATTGACAAGACAATTCAATAGCGATAGCTAC
CAACAAATGTAGATTCTGAAATCTCATAGCTGCAAAGGAAACTCATAGGG
CTCATAGAGATGGTTAGAATATCTTTTGAGTATTTCTCATCAGCTTCTAG
TCTGTGTACCCTCTTCTTGTTTCTCTTTTCCATTTTCTATTTGCACGCTC
CATTTTATTTTGGTTTAATTCTTCTGTGGGAAGGGAGAAGTACTGATAAT
CTTGTAGAAAGCTCTCTCAAGATATAGAATTTCAATCTTGAAACGTGAAC
TTGTAGATTGTAGGAATTGTAAAAGTCTTTTGTTTTGAATCTTTGAATGC
TTAGTCTTGCTATTTTTATTTTGACAAAAATTACCATATCTTATTTGAAA
TTTTCAATAATTGTAGAAATTAGATTTTCGACATTATTTAGGTGTGTTTG
TTGTTGACGAATTTTATGTGGATACTAAATGGTTGCTATTCTATATTTTT
AACATTTGGGAATTATCAGTTTTGTTCAAAAAAATAATATCTTTGCGAAT
ATGTACAACAAGAGTTTTGAGGATAACTCCTACCCACTTATAGCTTTATA
TAAACCTTATAAAAAGGTAGTTTTTCAATCCCGGCCAAGCGGTAATGGTA
GCACTACTCAATAGCGGTGTTATGCATCTACTTTTTCCTCGGACACTTGT
GATGCCGCTTACGTTTCATGTTAGGCAAAGATTTGATACTGCTTGGCTTC
TTTGCGGGTACAACTCCGATCAACGTGTTCTTAACTCTCAGACTCAGTCG
TAGGAAATCTTATCAGATTATTCGCATAAATTTTAATTTTTTGCCTTTNT
TCTTAACTCTCAGACTCAGTCGTAGGAAATCTTATCAGATTATTCGCATG
AATTTTAATTTTTTGCCTTTTTTTTTACTTGTCAGATATTTTGTTAGGGG
ATAGTTATACTTATGTTTTGATTTAAAGAAAATTAATTTATATGATTCAT
TATCATGCGAT

Coding sequence (CDS) from alignment at sc0000349:28793..37653-

>TCONS_00020130 ID=TCONS_00020130|Name=TCONS_00020130|organism=Clytia hemisphaerica|type=CDS|length=5481bp|location=Sequence derived from alignment at sc0000349:28793..37653- (Clytia hemisphaerica)
ATTCTTGGTATCTTATGCGCATGGGCATTGACAAGACAATTCAATAGCGA
TAGCTACCAACAAATGTAGGGATGTTACAGCGAGCTCTTAACAAAGACCA
AGAAGAACTTTTTGATCGTCGGTGGATGCGCCCTTGGTATTGCTGTTTTC
CAAGAAGCAATGGACAAAGTTCAAGGATCTGTCATCAAGTGCTGCGGTGA
AAACGGATACAAAGATTACGTCACAGCGAGCGGTAACGCCACTGTTGGAA
ATGCCACCGTTGGAAATGCCACCACTGTCACTCACTACAAAGTTCCAAAA
TCATGTTGTAAAGATGGGGTTACTGATGGATGCAAGTATGATCAAGTGAT
TACTGATACTACAACTGATACTGGATTTTATACTGATCTGTCTAATGGAT
TGAAGTCTGGTTTGGATAATGCTGTCAAGAATTATTATCAAGACGAAGAT
TTAAAGTATATGTTTGTGCTGGTCATCTTGGTAGTAGTCGAAATTGCAGG
TGGAATCACTGGATATGTCATGAGAAATAAGTTAACTGGTCTTGGTTTAT
TAGTCCTTGGTATCTTGTCTAAATATGCGTTCAGCTACATGCTCAAGTTG
TCATCTGACATCAACTATAATTTGGCTCCTTACATCATGATTGGATGTGG
TGTGTTCATTGTGTTAGTGGGCTTCATCGGCTGTTGGGCTGCTGTTAAAG
AACATGGTTGGGCCCTCAAATTGATGGCTATCGTAACGTCTTGCACTAAA
GGTTTATTCCTTATCTTCAACTTTGTTTTTTGGATTCTTGGTATCTTATG
CGCATGGGCATTGACAAGACAATTCAATAGCGATAGCTACCAACAAATGT
AGGGATGTTACAGCGAGCTCTTAACAAAGACCAAGAAGAACTTTTTGATC
GTCGGTGGATGCGCCCTTGGTATTGCTGTTTTCCAAGAAGCAATGGACAA
AGTTCAAGGATCTGTCATCAAGTGCTGCGGTGAAAACGGATACAAAGATT
ACGTCACAGCGAGCGGTAACGCCACTGTTGGAAATGCCACCGTTGGAAAT
GCCACCACTGTCACTCACTACAAAGTTCCAAAATCATGTTGTAAAGATGG
GGTTACTGATGGATGCAAGTATGATCAAGTGATTACTGATACTACAACTG
ATACTGGATTTTATACTGATCTGTCTAATGGATTGAAGTCTGGTTTGGAT
AATGCTGTCAAGAATTATTATCAAGACGAAGATTTAAAGTATATGTTTGT
GCTGGTCATCTTGGTAGTAGTCGAAATTGCAGGTGGAATCACTGGATATG
TCATGAGAAATAAGTTAACTGGTCTTGGTTTATTAGTCCTTGGTATCTTG
TCTAAATATGCGTTCAGCTACATGCTCAAGTTGTCATCTGACATCAACTA
TAATTTGGCTCCTTACATCATGATTGGATGTGGTGTGTTCATTGTGTTAG
TGGGCTTCATCGGCTGTTGGGCTGCTGTTAAAGAACATGGTTGGGCCCTC
AAATTGATGGCTATCGTAACGTCTTGCACTAAAGGTTTATTCCTTATCTT
CAACTTTGTTTTTTGGATTCTTGGTATCTTATGCGCATGGGCATTGACAA
GACAATTCAATAGCGATAGCTACCAACAAATGTAGGGATGTTACAGCGAG
CTCTTAACAAAGACCAAGAAGAACTTTTTGATCGTCGGTGGATGCGCCCT
TGGTATTGCTGTTTTCCAAGAAGCAATGGACAAAGTTCAAGGATCTGTCA
TCAAGTGCTGCGGTGAAAACGGATACAAAGATTACGTCACAGCGAGCGGT
AACGCCACTGTTGGAAATGCCACCGTTGGAAATGCCACCACTGTCACTCA
CTACAAAGTTCCAAAATCATGTTGTAAAGATGGGGTTACTGATGGATGCA
AGTATGATCAAGTGATTACTGATACTACAACTGATACTGGATTTTATACT
GATCTGTCTAATGGATTGAAGTCTGGTTTGGATAATGCTGTCAAGAATTA
TTATCAAGACGAAGATTTAAAGTATATGTTTGTGCTGGTCATCTTGGTAG
TAGTCGAAATTGCAGGTGGAATCACTGGATATGTCATGAGAAATAAGTTA
ACTGGTCTTGGTTTATTAGTCCTTGGTATCTTGTCTAAATATGCGTTCAG
CTACATGCTCAAGTTGTCATCTGACATCAACTATAATTTGGCTCCTTACA
TCATGATTGGATGTGGTGTGTTCATTGTGTTAGTGGGCTTCATCGGCTGT
TGGGCTGCTGTTAAAGAACATGGTTGGGCCCTCAAATTGATGGCTATCGT
AACGTCTTGCACTAAAGGTTTATTCCTTATCTTCAACTTTGTTTTTTGGA
TTCTTGGTATCTTATGCGCATGGGCATTGACAAGACAATTCAATAGCGAT
AGCTACCAACAAATGTAGGGATGTTACAGCGAGCTCTTAACAAAGACCAA
GAAGAACTTTTTGATCGTCGGTGGATGCGCCCTTGGTATTGCTGTTTTCC
AAGAAGCAATGGACAAAGTTCAAGGATCTGTCATCAAGTGCTGCGGTGAA
AACGGATACAAAGATTACGTCACAGCGAGCGGTAACGCCACTGTTGGAAA
TGCCACCGTTGGAAATGCCACCACTGTCACTCACTACAAAGTTCCAAAAT
CATGTTGTAAAGATGGGGTTACTGATGGATGCAAGTATGATCAAGTGATT
ACTGATACTACAACTGATACTGGATTTTATACTGATCTGTCTAATGGATT
GAAGTCTGGTTTGGATAATGCTGTCAAGAATTATTATCAAGACGAAGATT
TAAAGTATATGTTTGTGCTGGTCATCTTGGTAGTAGTCGAAATTGCAGGT
GGAATCACTGGATATGTCATGAGAAATAAGTTAACTGGTCTTGGTTTATT
AGTCCTTGGTATCTTGTCTAAATATGCGTTCAGCTACATGCTCAAGTTGT
CATCTGACATCAACTATAATTTGGCTCCTTACATCATGATTGGATGTGGT
GTGTTCATTGTGTTAGTGGGCTTCATCGGCTGTTGGGCTGCTGTTAAAGA
ACATGGTTGGGCCCTCAAATTGATGGCTATCGTAACGTCTTGCACTAAAG
GTTTATTCCTTATCTTCAACTTTGTTTTTTGGATTCTTGGTATCTTATGC
GCATGGGCATTGACAAGACAATTCAATAGCGATAGCTACCAACAAATGTA
GGGATGTTACAGCGAGCTCTTAACAAAGACCAAGAAGAACTTTTTGATCG
TCGGTGGATGCGCCCTTGGTATTGCTGTTTTCCAAGAAGCAATGGACAAA
GTTCAAGGATCTGTCATCAAGTGCTGCGGTGAAAACGGATACAAAGATTA
CGTCACAGCGAGCGGTAACGCCACTGTTGGAAATGCCACCGTTGGAAATG
CCACCACTGTCACTCACTACAAAGTTCCAAAATCATGTTGTAAAGATGGG
GTTACTGATGGATGCAAGTATGATCAAGTGATTACTGATACTACAACTGA
TACTGGATTTTATACTGATCTGTCTAATGGATTGAAGTCTGGTTTGGATA
ATGCTGTCAAGAATTATTATCAAGACGAAGATTTAAAGTATATGTTTGTG
CTGGTCATCTTGGTAGTAGTCGAAATTGCAGGTGGAATCACTGGATATGT
CATGAGAAATAAGTTAACTGGTCTTGGTTTATTAGTCCTTGGTATCTTGT
CTAAATATGCGTTCAGCTACATGCTCAAGTTGTCATCTGACATCAACTAT
AATTTGGCTCCTTACATCATGATTGGATGTGGTGTGTTCATTGTGTTAGT
GGGCTTCATCGGCTGTTGGGCTGCTGTTAAAGAACATGGTTGGGCCCTCA
AATTGATGGCTATCGTAACGTCTTGCACTAAAGGTTTATTCCTTATCTTC
AACTTTGTTTTTTGGATTCTTGGTATCTTATGCGCATGGGCATTGACAAG
ACAATTCAATAGCGATAGCTACCAACAAATGTAGGGATGTTACAGCGAGC
TCTTAACAAAGACCAAGAAGAACTTTTTGATCGTCGGTGGATGCGCCCTT
GGTATTGCTGTTTTCCAAGAAGCAATGGACAAAGTTCAAGGATCTGTCAT
CAAGTGCTGCGGTGAAAACGGATACAAAGATTACGTCACAGCGAGCGGTA
ACGCCACTGTTGGAAATGCCACCGTTGGAAATGCCACCACTGTCACTCAC
TACAAAGTTCCAAAATCATGTTGTAAAGATGGGGTTACTGATGGATGCAA
GTATGATCAAGTGATTACTGATACTACAACTGATACTGGATTTTATACTG
ATCTGTCTAATGGATTGAAGTCTGGTTTGGATAATGCTGTCAAGAATTAT
TATCAAGACGAAGATTTAAAGTATATGTTTGTGCTGGTCATCTTGGTAGT
AGTCGAAATTGCAGGTGGAATCACTGGATATGTCATGAGAAATAAGTTAA
CTGGTCTTGGTTTATTAGTCCTTGGTATCTTGTCTAAATATGCGTTCAGC
TACATGCTCAAGTTGTCATCTGACATCAACTATAATTTGGCTCCTTACAT
CATGATTGGATGTGGTGTGTTCATTGTGTTAGTGGGCTTCATCGGCTGTT
GGGCTGCTGTTAAAGAACATGGTTGGGCCCTCAAATTGATGGCTATCGTA
ACGTCTTGCACTAAAGGTTTATTCCTTATCTTCAACTTTGTTTTTTGGAT
TCTTGGTATCTTATGCGCATGGGCATTGACAAGACAATTCAATAGCGATA
GCTACCAACAAATGTAGGGATGTTACAGCGAGCTCTTAACAAAGACCAAG
AAGAACTTTTTGATCGTCGGTGGATGCGCCCTTGGTATTGCTGTTTTCCA
AGAAGCAATGGACAAAGTTCAAGGATCTGTCATCAAGTGCTGCGGTGAAA
ACGGATACAAAGATTACGTCACAGCGAGCGGTAACGCCACTGTTGGAAAT
GCCACCGTTGGAAATGCCACCACTGTCACTCACTACAAAGTTCCAAAATC
ATGTTGTAAAGATGGGGTTACTGATGGATGCAAGTATGATCAAGTGATTA
CTGATACTACAACTGATACTGGATTTTATACTGATCTGTCTAATGGATTG
AAGTCTGGTTTGGATAATGCTGTCAAGAATTATTATCAAGACGAAGATTT
AAAGTATATGTTTGTGCTGGTCATCTTGGTAGTAGTCGAAATTGCAGGTG
GAATCACTGGATATGTCATGAGAAATAAGTTAACTGGTCTTGGTTTATTA
GTCCTTGGTATCTTGTCTAAATATGCGTTCAGCTACATGCTCAAGTTGTC
ATCTGACATCAACTATAATTTGGCTCCTTACATCATGATTGGATGTGGTG
TGTTCATTGTGTTAGTGGGCTTCATCGGCTGTTGGGCTGCTGTTAAAGAA
CATGGTTGGGCCCTCAAATTGATGGCTATCGTAACGTCTTGCACTAAAGG
TTTATTCCTTATCTTCAACTTTGTTTTTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_011307XLOC_011307Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020130-proteinTCONS_00020130-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00020130-exon-sc0000349-1575043694:37368..37653TCONS_00020130-exon-sc0000349-1575043694:37368..37653Clytia hemisphaericaexon
TCONS_00020130-exon-sc0000349-1575043694:34003..34194TCONS_00020130-exon-sc0000349-1575043694:34003..34194Clytia hemisphaericaexon
TCONS_00020130-exon-sc0000349-1575043694:33739..33813TCONS_00020130-exon-sc0000349-1575043694:33739..33813Clytia hemisphaericaexon
TCONS_00020130-exon-sc0000349-1575043694:32259..32327TCONS_00020130-exon-sc0000349-1575043694:32259..32327Clytia hemisphaericaexon
TCONS_00020130-exon-sc0000349-1575043694:31472..31705TCONS_00020130-exon-sc0000349-1575043694:31472..31705Clytia hemisphaericaexon
TCONS_00020130-exon-sc0000349-1575043694:30862..30945TCONS_00020130-exon-sc0000349-1575043694:30862..30945Clytia hemisphaericaexon
TCONS_00020130-exon-sc0000349-1575043694:29692..29810TCONS_00020130-exon-sc0000349-1575043694:29692..29810Clytia hemisphaericaexon
TCONS_00020130-exon-sc0000349-1575043694:28793..29362TCONS_00020130-exon-sc0000349-1575043694:28793..29362Clytia hemisphaericaexon
TCONS_00020130-exon-sc0000349-1510915933:37368..37653TCONS_00020130-exon-sc0000349-1510915933:37368..37653Clytia hemisphaericaexon
TCONS_00020130-exon-sc0000349-1510915933:34003..34194TCONS_00020130-exon-sc0000349-1510915933:34003..34194Clytia hemisphaericaexon
TCONS_00020130-exon-sc0000349-1510915933:33739..33813TCONS_00020130-exon-sc0000349-1510915933:33739..33813Clytia hemisphaericaexon
TCONS_00020130-exon-sc0000349-1510915933:32259..32327TCONS_00020130-exon-sc0000349-1510915933:32259..32327Clytia hemisphaericaexon
TCONS_00020130-exon-sc0000349-1510915933:31472..31705TCONS_00020130-exon-sc0000349-1510915933:31472..31705Clytia hemisphaericaexon
TCONS_00020130-exon-sc0000349-1510915933:30862..30945TCONS_00020130-exon-sc0000349-1510915933:30862..30945Clytia hemisphaericaexon
TCONS_00020130-exon-sc0000349-1510915933:29692..29810TCONS_00020130-exon-sc0000349-1510915933:29692..29810Clytia hemisphaericaexon
TCONS_00020130-exon-sc0000349-1510915933:28793..29362TCONS_00020130-exon-sc0000349-1510915933:28793..29362Clytia hemisphaericaexon
TCONS_00020130-exon-sc0000349-1491911889:37368..37653TCONS_00020130-exon-sc0000349-1491911889:37368..37653Clytia hemisphaericaexon
TCONS_00020130-exon-sc0000349-1491911889:34003..34194TCONS_00020130-exon-sc0000349-1491911889:34003..34194Clytia hemisphaericaexon
TCONS_00020130-exon-sc0000349-1491911889:33739..33813TCONS_00020130-exon-sc0000349-1491911889:33739..33813Clytia hemisphaericaexon
TCONS_00020130-exon-sc0000349-1491911889:32259..32327TCONS_00020130-exon-sc0000349-1491911889:32259..32327Clytia hemisphaericaexon
TCONS_00020130-exon-sc0000349-1491911889:31472..31705TCONS_00020130-exon-sc0000349-1491911889:31472..31705Clytia hemisphaericaexon
TCONS_00020130-exon-sc0000349-1491911889:30862..30945TCONS_00020130-exon-sc0000349-1491911889:30862..30945Clytia hemisphaericaexon
TCONS_00020130-exon-sc0000349-1491911889:29692..29810TCONS_00020130-exon-sc0000349-1491911889:29692..29810Clytia hemisphaericaexon
TCONS_00020130-exon-sc0000349-1491911889:28793..29362TCONS_00020130-exon-sc0000349-1491911889:28793..29362Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000349supercontigsc0000349:28793..37653 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
177.915	175.224	113.714	106.535	21.4914	15.3732	26.346	35.8866	114.106	96.206	131.963	97.6989	101.079	99.0816	137.406	169.194	100.137	105.146	126.199	145.124	100.451	108.143	129.114	139.968	54.8791	35.6893	155.611	156.889	250.691	232.46
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000301Tetraspanin
IPR018499Tetraspanin/Peripherin
IPR008952Tetraspanin_EC2
IPR018503Tetraspanin_CS
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00020130 vs. Swiss-Prot (Human)
Match: TSN6 (Tetraspanin-6 OS=Homo sapiens GN=TSPAN6 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.464e-31
Identity = 78/257 (30.35%), Postives = 134/257 (52.14%), Query Frame = 2 
Query:  236 VTSCTKGLFLIFNFVFWXXXXXXXXXXXXSKYAFSYMLKLSSDINYNLAPYIMIGCGVFIVLVGFIGCWAAVKEHGWALKLYMFVLVILVVVEIAGGITGYVMRNKLSNGLKSGLDNAVKNYYQDEDLK-EAMDKVQGSVIKCCGENGYKDYVTASGNATVGNATVGNATTVTHYKVPKSCCK-DGVTDGCKYDQVIXXXXXXXGFYTDGCYSELLTKTKKNFLIVGGCALGIAVFQILGILCAWALTRQFNSDSYQ 1000
            V +C K + LI+ F+FW+TG+ LL +GI  K +      L ++   N+ P+++I  G  I+L+G  GC+A  +   W LKLY   L ++ +VE+   I G+V R+++ N  K+  + A+K Y    D +  A+DK+Q + + CCG   Y+D+   +  +  G               PKSCCK +  T     D+V            +GC+ +++T  +    +V G + G+A FQ++GI  A+ L+R   ++ Y+
Sbjct:   13 VITCFKSVLLIYTFIFWITGVILLAVGIWGKVSLENYFSLLNEKATNV-PFVLIATGTVIILLGTFGCFATCRASAWMLKLYAMFLTLVFLVELVAAIVGFVFRHEIKNSFKNNYEKALKQYNSTGDYRSHAVDKIQNT-LHCCGVTDYRDWTDTNYYSEKG--------------FPKSCCKLEDCTPQRDADKV----------NNEGCFIKVMTIIESEMGVVAGISFGVACFQLIGIFLAYCLSRAITNNQYE 243
The following BLAST results are available for this feature:
BLAST of TCONS_00020130 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSN62.464e-3130.35Tetraspanin-6 OS=Homo sapiens GN=TSPAN6 PE=1 SV=1[more]
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