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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020422 ID=TCONS_00020422|Name=TCONS_00020422|organism=Clytia hemisphaerica|type=transcript|length=2938bpRun BLAST on NCBI transcript from alignment at sc0000356:87812..108355- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020422 ID=TCONS_00020422|Name=TCONS_00020422|organism=Clytia hemisphaerica|type=transcript|length=20544bp|location=Sequence derived from alignment at sc0000356:87812..108355- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00020422 vs. Swiss-Prot (Human)
Match: CAC1B (Voltage-dependent N-type calcium channel subunit alpha-1B OS=Homo sapiens GN=CACNA1B PE=1 SV=1) HSP 1 Score: 610.527 bits (1573), Expect = 0.000e+0 Identity = 356/765 (46.54%), Postives = 499/765 (65.23%), Query Frame = 3
Query: 375 NTLFIFPPDGIVRRIIHPIVTSPHFDNFXXXXXXXXXXXXXXENPTNPDADINKILNLTDYFFTTVFALEVLLKVVNFGFALHPNSYCRDTWNCADMFVVSCAITSLVLSQDKNASTTVKSIVKILRILRVLRPLKSINKLQELKAVFQCMVFSLQNVVNVLIITVQFLLIFSMMGVQLFNGKLFQCNDPSKEFEDECQGYYITFDKENYNRPIQVKREWSLIDWNFNHLGIALTTLFSSATGEGWPAVMQTGIDSQLENQGPLLNNKIWXXXXXXXXXXXXXXXXXXXXXGLIILTFQNL--QIDPNAALDRNTKNSFDFVMRSKPMERFMPEDVKSWQYKAWALVESSQWEILISVLIALNTVVLMMEFADQPDWYSNILGMIGDVFTFVFTFEFALKMFALGC-NYFKDFWNNFDMFIVLGSILDFMIKKILPPGTVPFDTSSXXXXXXXXXXXXXXXXXXXXXXXWTFLQSFKALPYVCMLIFLLFFVYGIIGMQIFSSIDKDSEDDPWNQINRNNHFSTYFSSTQVLFRVATGENWPNIMLACTSGAKCDQKLRSVQIDNMQDCGSPIAYVYFISFVFFCSFLMLNLFIAVIMDNFAFLTEDSSILGPHHLDEFVTVWSDFDPRASGRIQHTEVCELLRQMLPPVGLGLKCPKTVAYKRLVQMNMRYY-RDGTVDYTGTFFALVRTGLKVATQDANLKKTDQEFKNMLKKQIKV-----PKRTLDMIIPRVPRNAKHMTIAKIYTAKLIWENYKNMKKAQ 2642
+++F P ++RR H IVT +F+ IL +I +SS LA E+P D+ N L DY FT VF E+++K+++ G LHP +Y RD WN D VVS A+ + S K +K LR+LRVLRPLK+I +L +LKAVF C+V SL+NV+N+LI+ + F+ IF+++ VQLF GK F C D SKE E +C+G Y+ ++KE R+W D++++++ AL TLF+ +TGEGWP V++ +D+ E QGP ++ ++I+++V+ V+F FFF+N+FV LII+TFQ ++ +L++N + DF + +KP+ R+MP++ +S+QYK W V S +E I +IALNTVVLMM+F D P Y +L + VFT +F+ E LK+ A G NYF+D WN FD VLGSI D ++ +I + S LRLFRA RLIKLLR+ +RILLWTF+QSFKALPYVC+LI +LFF+Y IIGMQ+F +I D DD INR+N+F T+ + +LFR ATGE W IML+C S CD++ N +CGS AY YF+SF+F CSFLMLNLF+AVIMDNF +LT DSSILGPHHLDEF+ VW+++DP A GRI + ++ E+L+ M PP+GLG KCP VAYKRLV+MNM D TV +T T AL+RT L++ A K+ + L+K+I V P++TLD+++P P MT+ K+Y A +I++ YK K +
Sbjct: 1128 SSMFCLSPTNLLRRFCHYIVTMRYFEVVILVVIALSSIALAAEDPVRTDSPRNNALKYLDYIFTGVFTFEMVIKMIDLGLLLHPGAYFRDLWNILDFIVVSGALVAFAFSGSKGKDINT---IKSLRVLRVLRPLKTIKRLPKLKAVFDCVVNSLKNVLNILIVYMLFMFIFAVIAVQLFKGKFFYCTDESKELERDCRGQYLDYEKEEVE---AQPRQWKKYDFHYDNVLWALLTLFTVSTGEGWPMVLKHSVDATYEEQGPSPGYRMELSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKVMSECSLEKNERACIDFAISAKPLTRYMPQNRQSFQYKTWTFVVSPPFEYFIMAMIALNTVVLMMKFYDAPYEYELMLKCLNIVFTSMFSMECVLKIIAFGVLNYFRDAWNVFDFVTVLGSITDILVTEIAETNNF-INLSFLRLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIALD--DD--TSINRHNNFRTFLQALMLLFRSATGEAWHEIMLSCLSNQACDEQA------NATECGSDFAYFYFVSFIFLCSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLDEFIRVWAEYDPAACGRISYNDMFEMLKHMSPPLGLGKKCPARVAYKRLVRMNMPISNEDMTVHFTSTLMALIRTALEIKLAPAGTKQ--HQCDAELRKEISVVWANLPQKTLDLLVP--PHKPDEMTVGKVYAALMIFDFYKQNKTTR 1871 HSP 2 Score: 85.1149 bits (209), Expect = 1.713e-16 Identity = 73/269 (27.14%), Postives = 134/269 (49.81%), Query Frame = 3
Query: 369 TVN-TLFIFPPDGIVRRIIHPIVTSPHFDNFXXXXXXXXXXXXXXENPTNPDAD---INKILNLTDYFFTTVFALEVLLKVVNFGFALHPNSYCRDTWNCADMFVVSCAITSLVLSQDKNASTTVKSIVKILRILRVLRPLKSINKLQELKAVFQCMVFSLQNVVNVLIITVQFLLIFSMMGVQLFNGKLFQCNDPSKEFEDECQGYYITFDKENYNR----PIQVKREWSLIDW---NFNHLGIALTTLFSSATGEGWPAVMQTGIDS 1142
TVN +LF+F D +VR+ I P F+ ILA I+ + +LALE PD D +++ L+ T+ +F +F E +K++ GF H SY R+ WN D VV I A+ ++ LR +RVLRPLK ++ + L+ V + ++ ++ ++ + ++ +L+F+++G++ + GK + P+ + + KE R + + W ++ NF+++ A+ T+F T EGW ++ D+
Sbjct: 70 TVNRSLFVFSEDNVVRKYAKRITEWPPFEYMILATIIANCIVLALEQHL-PDGDKTPMSERLDDTEPYFIGIFCFEAGIKIIALGFVFHKGSYLRNGWNVMDFVVVLTGIL---------ATAGTDFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAILMFAIIGLEFYMGKFHKACFPNSTDAEPVGDF--PCGKEAPARLCEGDTECREYWPGPNFGITNFDNILFAILTVFQCITMEGWTDILYNTNDA 326 The following BLAST results are available for this feature:
BLAST of TCONS_00020422 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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