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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00020506 ID=TCONS_00020506|Name=TCONS_00020506|organism=Clytia hemisphaerica|type=transcript|length=2623bpRun BLAST on NCBI protein sequence of TCONS_00020506-protein >TCONS_00020506-protein ID=TCONS_00020506-protein|Name=TCONS_00020506-protein|organism=Clytia hemisphaerica|type=polypeptide|length=664bp MSGKEDPSTSLVPTKNISFRSLTVDTDSDIDPLGSTKSTPDINCLDKSVGRun BLAST on NCBI transcript from alignment at sc0000357:300828..309773+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00020506 ID=TCONS_00020506|Name=TCONS_00020506|organism=Clytia hemisphaerica|type=transcript|length=8946bp|location=Sequence derived from alignment at sc0000357:300828..309773+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000357:300828..309773+ >TCONS_00020506 ID=TCONS_00020506|Name=TCONS_00020506|organism=Clytia hemisphaerica|type=CDS|length=23940bp|location=Sequence derived from alignment at sc0000357:300828..309773+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00020506 vs. Swiss-Prot (Human)
Match: TTC16 (Tetratricopeptide repeat protein 16 OS=Homo sapiens GN=TTC16 PE=2 SV=2) HSP 1 Score: 298.516 bits (763), Expect = 5.995e-87 Identity = 161/459 (35.08%), Postives = 271/459 (59.04%), Query Frame = 1
Query: 490 TINEKGQEMYRAAWEAYEEDRNEDALKCIRKALVLMPEEADYFVLRGDIYLQMCDYKSAIMDYKHVCILSPDNAEYLSKLAFIYYLQGQCYYDEELFLDALECFTRAAEMQPENSAYHSRSIACLLSLKRHKDCMKMINERIDVETDNPDXXXXXXXXXXXFSNPTLAFFDIKDALEMDPANEEADVMNTNLETRAEFFKERAIKLDMAGKTKEAIMKITMATDTNPEVLEYHILRAGMHRRNFDFNASVDDLLLAMDKCNYDVKSPIFIRAQKQLLLTFNDFAIDCFRKGYYEEAVVLLEKAIQGEKHEPLFYINRGDCFYKLNHLHFAMLDYQQAEEIDTNNKSVALRLSVVYNQMGLNEYASRKYYRSEDYFSLAIAHDCRNAIFYLSRARARYMQEKVSEAQVDVISGLTLDPSNKDFLSIFDRLYPREKVQDVFSSPFGQLVQKALEEVIEENF 1866
T+ K +E Y + E+ E A+ +AL L P+ D++ LR + YLQ+CD+ SA + + L DN ++L +L F+ YLQGQC +++ FLDAL F+ AAE+QPE + R +ACLL+LK+H+ C+ +I + +T N D+ I RARL+ P L + D+ AL ++P + +A ++ + +A+ ++ A L + GK + A+ +I A + NP + R M+RR +F+ +V+D L +D D + + +AQ+QLLLT+NDFA+ C+R+G Y+E V+LL KA++ E+ E YINRGDCF++L +L FA DYQQA + ++ R+ ++ +MG E +++ ++E++FS AI H+ + A +YL RA++R + + + A+ DV + L L+P + L+P V++V S+ L + LE+++E +
Sbjct: 56 TVPLKVREYYSRGQQCLEQADWETAVLLFSRALHLDPQLVDFYALRAEAYLQLCDFSSAAQNLRRAYSLQQDNCKHLERLTFVLYLQGQCLFEQCAFLDALNVFSHAAELQPEKPCFRYRCMACLLALKQHQACLTLITNELKQDTTNADVYIFRARLYNFLQKPHLCYRDLHSALLLNPKHPQARMLLQKMVAQAQQARQDAGILAVQGKLQHALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTED-QEDMVRQAQRQLLLTYNDFAVHCYRQGAYQEGVLLLNKALRDEQQEKGLYINRGDCFFQLGNLAFAEADYQQALALSPQDEGANTRMGLLQEKMGFCEQRRKQFQKAENHFSTAIRHNPQKAQYYLYRAKSRQLLQNIFGARQDVATVLLLNPKQPKLSLLMTNLFPGMSVEEVLSTQIAHLARLQLEQMVEGSL 513 The following BLAST results are available for this feature:
BLAST of TCONS_00020506 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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